MGE detailed information
MGE type: Conjugative plasmid MGE length: 126302 bp
Accession: NZ_CP013833 Location: 1..126302 Organism: Escherichia coli strain JJ2434 Replicon: plasmid pJJ2434_1
Accession: NZ_CP013833 Location: 1..126302 Organism: Escherichia coli strain JJ2434 Replicon: plasmid pJJ2434_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVR68_RS00005 () | 31..1644 | - | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| AVR68_RS00010 () | 1675..2025 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| AVR68_RS00015 () | 2022..2447 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| AVR68_RS00020 () | 2509..3660 | + | 1152 | WP_031325939.1 | DUF3800 domain-containing protein | - |
| AVR68_RS00025 () | 3694..4206 | - | 513 | WP_000151784.1 | hypothetical protein | - |
| AVR68_RS00030 () | 4752..4970 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| AVR68_RS00035 () | 4972..5277 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| AVR68_RS00040 () | 5278..6084 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| AVR68_RS00045 () | 6858..7613 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| AVR68_RS00050 () | 8201..9367 | + | 1167 | Protein_9 | plasmid-partitioning protein SopA | - |
| AVR68_RS00055 () | 9367..10338 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| AVR68_RS00060 () | 11205..12107 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| AVR68_RS28845 () | 12111..12415 | + | 305 | Protein_12 | hypothetical protein | - |
| AVR68_RS00065 () | 12492..13175 | + | 684 | WP_000086185.1 | DNA methylase | - |
| AVR68_RS00070 () | 13176..13397 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| AVR68_RS00075 () | 13411..13845 | + | 435 | WP_000274437.1 | DUF1380 family protein | - |
| AVR68_RS29550 () | 13896..14672 | + | 777 | WP_001753849.1 | hypothetical protein | - |
| AVR68_RS00085 () | 15212..15514 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| AVR68_RS00090 () | 15561..15983 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| AVR68_RS00095 () | 15980..16171 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| AVR68_RS00100 () | 17206..17436 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| AVR68_RS00105 () | 17488..18849 | + | 1362 | WP_000170728.1 | DUF3560 domain-containing protein | - |
| AVR68_RS00110 () | 18895..19458 | + | 564 | WP_012783964.1 | class I SAM-dependent methyltransferase | - |
| AVR68_RS30180 () | 20183..20301 | + | 119 | Protein_23 | single-stranded DNA-binding protein | - |
| AVR68_RS00115 () | 20327..20854 | + | 528 | WP_000290793.1 | single-stranded DNA-binding protein | - |
| AVR68_RS00120 () | 20910..21143 | + | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
| AVR68_RS00125 () | 21202..23160 | + | 1959 | WP_001145469.1 | ParB/RepB/Spo0J family partition protein | - |
| AVR68_RS00130 () | 23215..23649 | + | 435 | WP_000845901.1 | conjugation system SOS inhibitor PsiB | - |
| AVR68_RS00135 () | 23646..24365 | + | 720 | WP_001276234.1 | plasmid SOS inhibition protein A | - |
| AVR68_RS30185 () | 24377..24565 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 24377..24601 | + | 225 | NuclAT_0 | - | - |
| - () | 24377..24601 | + | 225 | NuclAT_0 | - | - |
| - () | 24377..24601 | + | 225 | NuclAT_0 | - | - |
| - () | 24377..24601 | + | 225 | NuclAT_0 | - | - |
| AVR68_RS00145 () | 24645..24803 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| AVR68_RS26885 () | 25251..25430 | - | 180 | Protein_31 | hypothetical protein | - |
| AVR68_RS00150 () | 25481..26227 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| AVR68_RS00155 () | 26242..27783 | - | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| AVR68_RS00160 () | 28308..28595 | + | 288 | WP_000107537.1 | hypothetical protein | - |
| AVR68_RS00165 () | 28716..29537 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| AVR68_RS00170 () | 29834..30481 | - | 648 | WP_000614282.1 | hypothetical protein | VF |
| AVR68_RS00175 () | 30767..31150 | + | 384 | WP_001151564.1 | relaxosome protein TraM | - |
| AVR68_RS00180 () | 31344..32030 | + | 687 | WP_000332487.1 | PAS domain-containing protein | - |
| AVR68_RS00185 () | 32124..32351 | + | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| AVR68_RS00190 () | 32385..32747 | + | 363 | WP_001098998.1 | type IV conjugative transfer system pilin TraA | - |
| AVR68_RS00195 () | 32752..33063 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| AVR68_RS00200 () | 33085..33651 | + | 567 | WP_000399804.1 | type IV conjugative transfer system protein TraE | - |
| AVR68_RS00205 () | 33662..34366 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| AVR68_RS00210 () | 34366..35793 | + | 1428 | WP_000146638.1 | conjugal transfer protein TraB | - |
| AVR68_RS00215 () | 35783..36367 | + | 585 | WP_000002795.1 | conjugal transfer protein TraP | - |
| AVR68_RS00220 () | 36321..36674 | + | 354 | WP_071528018.1 | conjugal transfer protein TrbD | - |
| AVR68_RS00225 () | 36667..36918 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| AVR68_RS00230 () | 36915..37430 | + | 516 | WP_000809893.1 | type IV conjugative transfer system lipoprotein TraV | - |
| AVR68_RS26895 () | 37565..37786 | + | 222 | WP_001278978.1 | conjugal transfer protein TraR | - |
| AVR68_RS00235 () | 37946..40585 | + | 2640 | WP_059219396.1 | type IV secretion system protein TraC | - |
| AVR68_RS00240 () | 40582..40968 | + | 387 | WP_000214082.1 | type-F conjugative transfer system protein TrbI | - |
| AVR68_RS00245 () | 40965..41597 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| AVR68_RS00250 () | 41594..42586 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| AVR68_RS00255 () | 42616..42921 | + | 306 | WP_000224411.1 | hypothetical protein | - |
| AVR68_RS00260 () | 42930..43543 | + | 614 | Protein_55 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| AVR68_RS00265 () | 43509..45119 | + | 1611 | WP_059219397.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| AVR68_RS00270 () | 45146..45403 | + | 258 | WP_000864320.1 | conjugal transfer protein TrbE | - |
| AVR68_RS00275 () | 45396..46139 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| AVR68_RS00280 () | 46155..46493 | + | 339 | WP_001287905.1 | conjugal transfer protein TrbA | - |
| AVR68_RS00285 () | 46620..46904 | + | 285 | WP_001448202.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| AVR68_RS00290 () | 46891..47435 | + | 545 | Protein_61 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| AVR68_RS00295 () | 47365..47706 | + | 342 | WP_001448115.1 | P-type conjugative transfer protein TrbJ | - |
| AVR68_RS00300 () | 47654..48079 | + | 426 | WP_001448114.1 | F-type conjugal transfer protein TrbF | - |
| AVR68_RS00305 () | 48066..49439 | + | 1374 | WP_001137364.1 | conjugal transfer protein TraH | - |
| AVR68_RS00310 () | 49436..52255 | + | 2820 | WP_001007057.1 | conjugal transfer mating pair stabilization protein TraG | - |
| AVR68_RS00315 () | 52274..52770 | + | 497 | Protein_66 | entry exclusion protein | - |
| AVR68_RS00320 () | 52802..53533 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| AVR68_RS00325 () | 53786..55993 | + | 2208 | WP_001462104.1 | type IV conjugative transfer system coupling protein TraD | - |
| AVR68_RS00330 () | 55993..58740 | + | 2748 | Protein_69 | Multifunctional conjugation protein TraI | Relaxase |
| AVR68_RS00335 () | 58805..59509 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| AVR68_RS00340 () | 59564..59953 | + | 390 | Protein_71 | serine hydrolase | - |
| AVR68_RS00345 () | 60000..60332 | - | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| AVR68_RS00350 () | 60346..63141 | + | 2796 | Protein_73 | Tn3 family transposase TnpA_Tn3 | Transposase |
| AVR68_RS00355 () | 63240..63893 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| AVR68_RS29575 () | 63986..64243 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| AVR68_RS00365 () | 64176..64577 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| AVR68_RS00370 () | 64714..67530 | - | 2817 | Protein_77 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| AVR68_RS00375 () | 67595..68299 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| AVR68_RS00380 () | 68443..68997 | + | 555 | WP_063840321.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| AVR68_RS00385 () | 69128..69958 | + | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| AVR68_RS00390 () | 70096..70536 | + | 441 | Protein_81 | CatB-related O-acetyltransferase | - |
| AVR68_RS00395 () | 70590..71294 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| AVR68_RS00400 () | 71360..72874 | + | 1515 | Protein_83 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| AVR68_RS00405 () | 72916..73158 | + | 243 | WP_032140899.1 | hypothetical protein | - |
| AVR68_RS00410 () | 73190..73840 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| AVR68_RS00415 () | 73946..75145 | + | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| AVR68_RS00420 () | 75177..76061 | - | 885 | WP_000058717.1 | EamA family transporter | - |
| AVR68_RS00425 () | 76199..76606 | - | 408 | WP_001214976.1 | cysteine hydrolase | - |
| AVR68_RS00430 () | 76595..77344 | + | 750 | Protein_89 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| AVR68_RS00435 () | 77368..77973 | - | 606 | WP_000509965.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| AVR68_RS00440 () | 78208..78912 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| AVR68_RS00445 () | 79138..79953 | + | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| AVR68_RS00450 () | 80300..82187 | + | 1888 | Protein_93 | FTR1 family iron permease | - |
| AVR68_RS00455 () | 82228..82755 | + | 528 | WP_000178050.1 | iron transporter | - |
| AVR68_RS00460 () | 82859..84238 | + | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| AVR68_RS00465 () | 84241..85524 | + | 1284 | WP_000964653.1 | ABC transporter permease | - |
| AVR68_RS00470 () | 85514..86644 | + | 1131 | WP_000729220.1 | ABC transporter permease | - |
| AVR68_RS00475 () | 86649..87344 | + | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| AVR68_RS00480 () | 87331..87815 | + | 485 | Protein_99 | TlpA family protein disulfide reductase | - |
| AVR68_RS00485 () | 87840..88325 | + | 486 | WP_000874189.1 | hypothetical protein | - |
| AVR68_RS00490 () | 88447..88977 | + | 531 | Protein_101 | histidine-type phosphatase | - |
| AVR68_RS00495 () | 89035..89739 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| AVR68_RS00500 () | 89804..90259 | + | 456 | Protein_103 | class A beta-lactamase | - |
| AVR68_RS00505 () | 91285..92141 | - | 857 | Protein_104 | incFII family plasmid replication initiator RepA | - |
| AVR68_RS00510 () | 92134..92208 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| AVR68_RS00515 () | 92433..92693 | - | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| AVR68_RS00520 () | 92933..93523 | - | 591 | WP_000766805.1 | DUF2726 domain-containing protein | - |
| AVR68_RS00525 () | 93561..93770 | - | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| AVR68_RS00530 () | 93816..94277 | - | 462 | WP_001233838.1 | thermonuclease family protein | - |
| AVR68_RS29585 () | 94476..94658 | - | 183 | WP_134087830.1 | hypothetical protein | - |
| AVR68_RS00540 () | 94862..95422 | - | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| AVR68_RS00545 () | 95525..96385 | - | 861 | WP_000704528.1 | putative protein YcjY | VF |
| AVR68_RS29590 () | 96444..97190 | - | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| AVR68_RS29595 () | 97210..99738 | - | 2529 | Protein_114 | Multifunctional conjugation protein TraI | Relaxase |
| AVR68_RS00560 () | 99792..100496 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| AVR68_RS26935 () | 100521..101717 | + | 1197 | Protein_116 | IS3 family transposase | - |
| AVR68_RS00580 () | 101739..101972 | + | 234 | Protein_117 | Tn3 family transposase | - |
| AVR68_RS00585 () | 102049..102357 | + | 309 | Protein_118 | IS4 family transposase ISEc13 | Transposase |
| AVR68_RS00590 () | 102416..103726 | - | 1311 | WP_000476108.1 | ABC transporter substrate-binding protein | - |
| AVR68_RS00595 () | 103719..104792 | - | 1074 | WP_000950177.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| AVR68_RS00600 () | 104798..105622 | - | 825 | WP_000922702.1 | phosphodiesterase | - |
| AVR68_RS00605 () | 105633..106520 | - | 888 | WP_001271561.1 | carbohydrate ABC transporter permease | - |
| AVR68_RS00610 () | 106510..107388 | - | 879 | WP_000338039.1 | sugar ABC transporter permease | - |
| AVR68_RS00615 () | 107519..107959 | - | 441 | Protein_124 | zinc-binding dehydrogenase | - |
| AVR68_RS00625 () | 108360..109250 | + | 891 | WP_001077068.1 | dihydrodipicolinate synthase family protein | - |
| AVR68_RS00630 () | 109275..109655 | + | 381 | WP_000710783.1 | Rid family detoxifying hydrolase | - |
| AVR68_RS00635 () | 109688..110653 | + | 966 | WP_001022265.1 | 2-keto-3-deoxygluconate transporter | - |
| AVR68_RS00640 () | 110699..111451 | - | 753 | WP_000562172.1 | IclR family transcriptional regulator | - |
| AVR68_RS00645 () | 112056..112340 | + | 285 | WP_001387467.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| AVR68_RS00650 () | 112340..112615 | + | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| AVR68_RS00655 () | 112721..113014 | + | 294 | WP_001105060.1 | hypothetical protein | - |
| AVR68_RS29600 () | 113049..113177 | - | 129 | Protein_132 | IS481 family transposase | - |
| AVR68_RS00660 () | 113210..114379 | - | 1170 | WP_001072355.1 | hypothetical protein | - |
| AVR68_RS00665 () | 114872..115180 | + | 309 | Protein_134 | type II toxin-antitoxin system ParD family antitoxin | - |
| AVR68_RS00675 () | 115469..116166 | + | 698 | Protein_135 | IS1 family transposase IS1S | Transposase |
| AVR68_RS00680 () | 116419..117441 | - | 1023 | WP_000361402.1 | helicase UvrD | - |
| AVR68_RS00685 () | 117426..118991 | - | 1566 | WP_001128474.1 | AAA family ATPase | - |
| AVR68_RS00690 () | 119066..119482 | - | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| AVR68_RS00695 () | 119479..119709 | - | 231 | WP_001261286.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| AVR68_RS00700 () | 120090..123884 | + | 3795 | WP_001144732.1 | hypothetical protein | - |
| AVR68_RS00705 () | 123929..124345 | - | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | - |
| AVR68_RS00710 () | 124342..124572 | - | 231 | WP_001261278.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| AVR68_RS00715 () | 124837..125337 | + | 501 | WP_000528932.1 | hypothetical protein | - |
| AVR68_RS29605 () | 125350..126122 | + | 773 | Protein_144 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|