MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 82119 bp
Accession: NZ_CP013758 Location: 1..82119 Organism: Piscirickettsia salmonis strain AY6492A Replicon: plasmid p1PS1
Accession: NZ_CP013758 Location: 1..82119 Organism: Piscirickettsia salmonis strain AY6492A Replicon: plasmid p1PS1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVI48_RS15515 () | 380..637 | + | 258 | WP_075273673.1 | hypothetical protein | - |
| AVI48_RS18735 () | 691..834 | + | 144 | WP_155764033.1 | hypothetical protein | - |
| AVI48_RS15520 () | 1143..1463 | + | 321 | WP_075273675.1 | AAA family ATPase | - |
| AVI48_RS15525 () | 2463..3071 | + | 609 | WP_155764034.1 | hypothetical protein | - |
| AVI48_RS15530 () | 3136..3399 | - | 264 | WP_054300655.1 | RNA-binding protein | - |
| AVI48_RS15535 () | 3890..4153 | + | 264 | WP_054300656.1 | hypothetical protein | - |
| AVI48_RS15540 () | 4155..4493 | + | 339 | WP_054300657.1 | hypothetical protein | - |
| AVI48_RS15545 () | 4620..5624 | + | 1005 | WP_075273679.1 | SIR2 family protein | - |
| AVI48_RS15550 () | 5637..7361 | + | 1725 | WP_054300659.1 | ATP-binding protein | - |
| AVI48_RS15560 () | 7865..10132 | - | 2268 | WP_054300661.1 | hypothetical protein | - |
| AVI48_RS15570 () | 10881..14270 | - | 3390 | WP_054300676.1 | TM0106 family RecB-like putative nuclease | - |
| AVI48_RS15575 () | 14347..15705 | - | 1359 | WP_075273687.1 | DEAD/DEAH box helicase | - |
| AVI48_RS15580 () | 15795..16361 | - | 567 | WP_054300664.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| AVI48_RS15585 () | 16365..17051 | - | 687 | WP_017377658.1 | Fic family protein | - |
| AVI48_RS15590 () | 17549..18073 | - | 525 | WP_016212199.1 | hypothetical protein | - |
| AVI48_RS15595 () | 18066..19088 | - | 1023 | WP_016212198.1 | AAA family ATPase | - |
| AVI48_RS15600 () | 20142..21188 | + | 1047 | WP_033923684.1 | hypothetical protein | - |
| AVI48_RS15605 () | 21737..22522 | + | 786 | WP_054300665.1 | class I SAM-dependent methyltransferase | - |
| AVI48_RS15610 () | 22590..23720 | + | 1131 | WP_054300584.1 | hypothetical protein | - |
| AVI48_RS15615 () | 23759..24199 | + | 441 | WP_054300583.1 | thioesterase family protein | - |
| AVI48_RS15620 () | 24207..24944 | + | 738 | WP_054300666.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| AVI48_RS15625 () | 24941..25510 | - | 570 | WP_054300667.1 | hypothetical protein | - |
| AVI48_RS18740 () | 25617..26189 | - | 573 | WP_155047022.1 | helix-turn-helix transcriptional regulator | - |
| AVI48_RS15635 () | 26643..27356 | + | 714 | WP_054300669.1 | class I SAM-dependent methyltransferase | - |
| AVI48_RS15640 () | 27369..27842 | + | 474 | WP_054300670.1 | hypothetical protein | - |
| AVI48_RS15645 () | 27858..28601 | + | 744 | WP_081007085.1 | queuosine precursor transporter | - |
| AVI48_RS15650 () | 28601..29047 | + | 447 | WP_054300671.1 | helix-turn-helix domain-containing protein | - |
| AVI48_RS15655 () | 29019..29633 | - | 615 | WP_054300672.1 | helix-turn-helix domain-containing protein | - |
| AVI48_RS15660 () | 29823..30014 | + | 192 | WP_054300607.1 | hypothetical protein | - |
| AVI48_RS15665 () | 30392..30649 | + | 258 | WP_155053509.1 | hypothetical protein | - |
| AVI48_RS15670 () | 30805..31449 | + | 645 | WP_054300609.1 | hypothetical protein | - |
| AVI48_RS15675 () | 31451..31771 | + | 321 | WP_054300610.1 | hypothetical protein | - |
| AVI48_RS15680 () | 31786..32076 | + | 291 | WP_054300611.1 | type IV conjugative transfer system protein TraL | - |
| AVI48_RS15685 () | 32084..32653 | + | 570 | WP_054300612.1 | hypothetical protein | - |
| AVI48_RS15690 () | 32646..33350 | + | 705 | WP_054300613.1 | type-F conjugative transfer system secretin TraK | - |
| AVI48_RS15695 () | 33360..34829 | + | 1470 | WP_054300614.1 | hypothetical protein | - |
| AVI48_RS15700 () | 34835..35278 | + | 444 | WP_054300615.1 | type IV conjugative transfer system lipoprotein TraV | - |
| AVI48_RS15705 () | 35366..36388 | + | 1023 | WP_054300616.1 | type IV secretion system DNA-binding domain-containing protein | - |
| AVI48_RS15710 () | 36437..39016 | + | 2580 | WP_054300617.1 | type IV secretion system protein TraC | - |
| AVI48_RS15715 () | 38991..39350 | + | 360 | WP_155047024.1 | hypothetical protein | - |
| AVI48_RS15720 () | 39343..39960 | + | 618 | WP_054300619.1 | type-F conjugative transfer system protein TraW | - |
| AVI48_RS15725 () | 39979..40449 | + | 471 | WP_054300620.1 | hypothetical protein | - |
| AVI48_RS15730 () | 40463..40765 | + | 303 | WP_054300621.1 | hypothetical protein | - |
| AVI48_RS15735 () | 40801..41103 | + | 303 | WP_054300622.1 | hypothetical protein | - |
| AVI48_RS15740 () | 41096..42085 | + | 990 | WP_054300623.1 | conjugal transfer pilus assembly protein TraU | - |
| AVI48_RS15745 () | 42096..42764 | + | 669 | WP_054300624.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| AVI48_RS15750 () | 42764..44659 | + | 1896 | WP_054300625.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| AVI48_RS15755 () | 44656..45468 | + | 813 | WP_054300626.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| AVI48_RS15760 () | 45465..45956 | + | 492 | WP_054300627.1 | conjugal transfer protein TraF | - |
| AVI48_RS15765 () | 45949..47331 | + | 1383 | WP_054300628.1 | conjugal transfer protein TraH | - |
| AVI48_RS15770 () | 47333..50122 | + | 2790 | WP_054300629.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| AVI48_RS15775 () | 50130..50447 | - | 318 | WP_054300630.1 | hypothetical protein | - |
| AVI48_RS15780 () | 50530..51273 | + | 744 | WP_054300631.1 | complement resistance protein TraT | - |
| AVI48_RS15785 () | 51312..51632 | + | 321 | WP_054300632.1 | hypothetical protein | - |
| AVI48_RS15795 () | 52200..54194 | + | 1995 | WP_054300634.1 | type IV conjugative transfer system coupling protein TraD | - |
| AVI48_RS15800 () | 54197..54946 | + | 750 | WP_054300635.1 | thioredoxin domain-containing protein | - |
| AVI48_RS15805 () | 54958..55137 | + | 180 | WP_054300636.1 | hypothetical protein | - |
| AVI48_RS15810 () | 55228..59853 | + | 4626 | WP_075273681.1 | Multifunctional conjugation protein TraI | Relaxase |
| AVI48_RS18745 () | 60033..60194 | + | 162 | WP_155764035.1 | hypothetical protein | - |
| AVI48_RS15815 () | 60191..61204 | + | 1014 | WP_075273683.1 | toprim domain-containing protein | - |
| AVI48_RS15820 () | 61199..61528 | - | 330 | WP_054300638.1 | hypothetical protein | - |
| AVI48_RS15825 () | 61519..61962 | - | 444 | WP_054300639.1 | hypothetical protein | - |
| AVI48_RS15830 () | 62549..62842 | + | 294 | WP_036774899.1 | hypothetical protein | - |
| AVI48_RS15835 () | 62906..63694 | - | 789 | WP_054300640.1 | hypothetical protein | - |
| AVI48_RS15840 () | 63898..64784 | + | 887 | WP_155047025.1 | IS630 family transposase ISAcma25 | Transposase |
| AVI48_RS15845 () | 64788..65276 | - | 489 | WP_054300642.1 | DnaJ domain-containing protein | - |
| AVI48_RS15850 () | 65345..65716 | - | 372 | WP_047927049.1 | hypothetical protein | - |
| AVI48_RS15855 () | 66164..66397 | + | 234 | WP_027242580.1 | hypothetical protein | - |
| AVI48_RS15860 () | 66574..68760 | + | 2187 | WP_027242581.1 | ATP-dependent RecD-like DNA helicase | - |
| AVI48_RS15865 () | 68770..69171 | - | 402 | WP_027242582.1 | helix-turn-helix domain-containing protein | - |
| AVI48_RS15870 () | 69168..69479 | - | 312 | WP_027242583.1 | type II toxin-antitoxin system HigB family toxin | - |
| AVI48_RS15875 () | 69593..69862 | - | 270 | WP_054300643.1 | WGR domain-containing protein | - |
| AVI48_RS15880 () | 69959..71821 | + | 1863 | WP_027242576.1 | RecX family transcriptional regulator | - |
| AVI48_RS15885 () | 71855..72340 | + | 486 | WP_027242575.1 | hypothetical protein | - |
| AVI48_RS15890 () | 72351..72578 | - | 228 | Protein_74 | transposase | - |
| AVI48_RS15895 () | 72574..72750 | + | 177 | Protein_75 | IS30 family transposase ISAs2 | Transposase |
| AVI48_RS15900 () | 72747..73091 | - | 345 | WP_054300644.1 | hypothetical protein | - |
| AVI48_RS15905 () | 73200..73511 | - | 312 | WP_054300645.1 | HU family DNA-binding protein | - |
| AVI48_RS15910 () | 73568..74539 | + | 972 | WP_054300646.1 | IS701 family transposase ISMhu9 | Transposase |
| AVI48_RS19170 () | 74536..74712 | - | 177 | WP_172673426.1 | transposase | - |
| AVI48_RS19175 () | 74706..74930 | - | 225 | WP_196214208.1 | hypothetical protein | - |
| AVI48_RS15925 () | 75116..75415 | + | 300 | WP_075273685.1 | HU family DNA-binding protein | - |
| AVI48_RS15930 () | 75528..77228 | + | 1701 | WP_054300647.1 | DUF4338 domain-containing protein | - |
| AVI48_RS15935 () | 77254..78489 | + | 1236 | WP_054300648.1 | hypothetical protein | - |
| AVI48_RS15940 () | 78606..78932 | - | 327 | WP_054300674.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| AVI48_RS15945 () | 78934..79176 | - | 243 | WP_054300649.1 | hypothetical protein | Antitoxin Detail |
| AVI48_RS15950 () | 79590..79910 | - | 321 | WP_054300650.1 | hypothetical protein | - |
| AVI48_RS15955 () | 79931..80365 | - | 435 | WP_054300651.1 | hypothetical protein | - |
| AVI48_RS15960 () | 80372..80779 | - | 408 | WP_054300652.1 | hypothetical protein | - |
| AVI48_RS15965 () | 80878..81186 | - | 309 | WP_081007087.1 | helix-turn-helix transcriptional regulator | - |
| AVI48_RS15970 () | 81236..81496 | - | 261 | WP_054300654.1 | hypothetical protein | - |
| AVI48_RS15975 () | 81558..82115 | - | 558 | WP_054300675.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|