MGE detailed information
MGE type: Prophage MGE length: 59896 bp
Accession: NZ_CP013663 Location: 1938554..1998449 Organism: Escherichia coli strain GB089 Replicon: chromosome
Accession: NZ_CP013663 Location: 1938554..1998449 Organism: Escherichia coli strain GB089 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CO57_RS11045 () | 1935067..1935813 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| CO57_RS11050 () | 1935902..1936588 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| CO57_RS11055 () | 1936766..1936969 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| CO57_RS11060 () | 1937005..1938465 | - | 1461 | WP_065275702.1 | mannitol dehydrogenase family protein | - |
| CO57_RS11065 () | 1938554..1939837 | - | 1284 | Protein_1882 | MHS family MFS transporter YdfJ | - |
| CO57_RS30910 () | 1940439..1940552 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| CO57_RS11070 () | 1940621..1940854 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| CO57_RS11075 () | 1941171..1941761 | + | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| CO57_RS11080 () | 1941859..1942434 | - | 576 | WP_000885614.1 | tail fiber assembly protein | - |
| CO57_RS11085 () | 1942434..1945832 | - | 3399 | WP_065225633.1 | prophage tail fiber N-terminal domain-containing protein | - |
| CO57_RS11090 () | 1945897..1946496 | - | 600 | WP_001233167.1 | Outer membrane protein X | VF |
| CO57_RS11095 () | 1946564..1949959 | - | 3396 | WP_065225634.1 | host specificity protein J | - |
| CO57_RS11100 () | 1950020..1950667 | - | 648 | WP_073972164.1 | tail assembly protein | - |
| CO57_RS11105 () | 1950565..1951308 | - | 744 | WP_000140707.1 | C40 family peptidase | - |
| CO57_RS11110 () | 1951313..1952011 | - | 699 | WP_001152368.1 | phage minor tail protein L | - |
| CO57_RS11115 () | 1952021..1952350 | - | 330 | WP_000447251.1 | phage tail protein | - |
| CO57_RS11120 () | 1952350..1955415 | - | 3066 | WP_065225635.1 | phage tail tape measure protein | - |
| CO57_RS11125 () | 1955387..1955716 | - | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| CO57_RS11130 () | 1955725..1956111 | - | 387 | WP_001384509.1 | phage minor tail protein G | - |
| CO57_RS11135 () | 1956172..1956915 | - | 744 | WP_000211131.1 | phage tail protein | - |
| CO57_RS11140 () | 1956926..1957327 | - | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| CO57_RS11145 () | 1957324..1957902 | - | 579 | WP_061892320.1 | phage tail protein | - |
| CO57_RS11150 () | 1957914..1958189 | - | 276 | WP_024207680.1 | DNA breaking-rejoining protein | - |
| CO57_RS11155 () | 1958182..1958505 | - | 324 | WP_001097041.1 | DUF2190 family protein | - |
| CO57_RS11160 () | 1958592..1960619 | - | 2028 | WP_001136588.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| CO57_RS11165 () | 1960564..1962072 | - | 1509 | WP_021542121.1 | phage portal protein | - |
| CO57_RS11170 () | 1962072..1962284 | - | 213 | WP_021545871.1 | hypothetical protein | - |
| CO57_RS11175 () | 1962281..1964380 | - | 2100 | WP_065275703.1 | phage terminase large subunit family protein | - |
| CO57_RS11180 () | 1964389..1964928 | - | 540 | WP_000421825.1 | DUF1441 family protein | - |
| CO57_RS11185 () | 1965479..1965685 | - | 207 | WP_000548593.1 | hypothetical protein | - |
| CO57_RS11190 () | 1965981..1966154 | - | 174 | WP_001019207.1 | addiction module toxin, GnsA/GnsB family | - |
| CO57_RS11195 () | 1966327..1966482 | - | 156 | WP_001443523.1 | hypothetical protein | - |
| CO57_RS28750 () | 1966630..1966818 | - | 189 | WP_071526745.1 | cold-shock protein | - |
| CO57_RS11200 () | 1966829..1967041 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| CO57_RS11205 () | 1967405..1967902 | - | 498 | WP_001071776.1 | DUF2514 domain-containing protein | - |
| CO57_RS11210 () | 1967899..1968432 | - | 534 | WP_001092966.1 | lysozyme | - |
| CO57_RS11215 () | 1968429..1968740 | - | 312 | WP_000189918.1 | DUF1327 domain-containing protein | - |
| CO57_RS11220 () | 1968745..1968960 | - | 216 | WP_000839562.1 | phage lysis protein EssD | - |
| CO57_RS11225 () | 1969212..1969586 | - | 375 | WP_001348108.1 | hypothetical protein | - |
| CO57_RS11230 () | 1969758..1970186 | - | 429 | WP_000506936.1 | cell envelope integrity protein TolA | - |
| CO57_RS30915 () | 1970553..1970684 | - | 132 | WP_047626566.1 | DUF3927 family protein | - |
| CO57_RS11255 () | 1971580..1972401 | - | 822 | WP_000762885.1 | antitermination protein | - |
| CO57_RS11260 () | 1972416..1972772 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CO57_RS11265 () | 1972785..1973834 | - | 1050 | WP_053292618.1 | DUF968 domain-containing protein | - |
| CO57_RS11270 () | 1973836..1974114 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| CO57_RS11275 () | 1974181..1974432 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| CO57_RS11280 () | 1974649..1974804 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| CO57_RS11285 () | 1974876..1975163 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| CO57_RS11290 () | 1975163..1975402 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| CO57_RS28755 () | 1975427..1975732 | + | 306 | WP_071527819.1 | hypothetical protein | - |
| CO57_RS11295 () | 1975935..1976267 | + | 333 | WP_001317460.1 | FlxA-like family protein | - |
| CO57_RS11300 () | 1976704..1978044 | - | 1341 | WP_000589012.1 | ISNCY family transposase ISCARN112 | Transposase |
| CO57_RS11305 () | 1978078..1978497 | - | 420 | WP_001151195.1 | DUF977 family protein | - |
| CO57_RS11310 () | 1978538..1979503 | - | 966 | WP_000054504.1 | hypothetical protein | - |
| CO57_RS11315 () | 1979484..1980005 | - | 522 | WP_000705349.1 | hypothetical protein | - |
| CO57_RS11320 () | 1979989..1980216 | - | 228 | WP_000476993.1 | transcriptional regulator | - |
| CO57_RS11325 () | 1980294..1980701 | + | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| CO57_RS11330 () | 1980894..1981049 | + | 156 | WP_000379589.1 | DUF1391 family protein | - |
| CO57_RS30920 () | 1981051..1981302 | + | 252 | WP_122986852.1 | hypothetical protein | - |
| CO57_RS30925 () | 1981289..1981609 | - | 321 | WP_122986851.1 | hypothetical protein | - |
| CO57_RS11340 () | 1982114..1982302 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| CO57_RS11345 () | 1982299..1982490 | + | 192 | WP_001083280.1 | lysis protein YdfD | - |
| CO57_RS11350 () | 1982584..1985055 | + | 2472 | WP_033815598.1 | exonuclease | - |
| CO57_RS11355 () | 1985128..1985379 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| CO57_RS11360 () | 1985414..1986694 | + | 1281 | WP_000876979.1 | Putative defective protein IntQ ; Integrase | Integrase |
| CO57_RS30150 () | 1986714..1986824 | - | 111 | WP_021531328.1 | hypothetical protein | - |
| CO57_RS11365 () | 1986882..1987901 | - | 1020 | WP_000836079.1 | Zn-dependent oxidoreductase | - |
| CO57_RS11370 () | 1987913..1989127 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| CO57_RS11375 () | 1989333..1989659 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| CO57_RS11380 () | 1989794..1990135 | + | 342 | WP_000705197.1 | DUF1283 family protein | - |
| CO57_RS11385 () | 1990170..1990730 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| CO57_RS11390 () | 1990733..1991443 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| CO57_RS11395 () | 1991551..1991856 | + | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| CO57_RS11400 () | 1992055..1994481 | + | 2427 | WP_000041534.1 | dimethyl sulfoxide reductase subunit A | - |
| CO57_RS11405 () | 1994542..1996965 | + | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| CO57_RS11410 () | 1996976..1997593 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| CO57_RS11415 () | 1997595..1998449 | + | 855 | WP_000526492.1 | dimethyl sulfoxide reductase anchor subunit | - |
| CO57_RS11420 () | 1998492..1999106 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| CO57_RS11425 () | 1999266..2000558 | + | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| CO57_RS11430 () | 2000511..2001206 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| CO57_RS11435 () | 2001331..2002551 | - | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|