MGE detailed information
MGE type: Prophage MGE length: 51602 bp
Accession: NZ_CP013662 Location: 1837351..1888952 Organism: Escherichia coli strain 08-00022 Replicon: chromosome
Accession: NZ_CP013662 Location: 1837351..1888952 Organism: Escherichia coli strain 08-00022 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CP48_RS10725 () | 1833865..1834611 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| CP48_RS10730 () | 1834700..1835386 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| CP48_RS10735 () | 1835563..1835766 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| CP48_RS10740 () | 1835802..1837262 | - | 1461 | WP_000527780.1 | mannitol dehydrogenase family protein | - |
| CP48_RS10745 () | 1837351..1838634 | - | 1284 | Protein_1778 | MHS family MFS transporter YdfJ | - |
| CP48_RS31395 () | 1839238..1839351 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| CP48_RS10750 () | 1839420..1839653 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| CP48_RS10755 () | 1839970..1840560 | + | 591 | WP_000078178.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| CP48_RS10760 () | 1840658..1841233 | - | 576 | WP_047088897.1 | tail fiber assembly protein | - |
| CP48_RS28865 () | 1841233..1844628 | - | 3396 | WP_071940916.1 | prophage tail fiber N-terminal domain-containing protein | - |
| CP48_RS10780 () | 1844693..1845292 | - | 600 | WP_001230388.1 | Outer membrane protein X | VF |
| CP48_RS10785 () | 1845359..1848841 | - | 3483 | WP_065225022.1 | host specificity protein J | - |
| CP48_RS10790 () | 1848901..1849533 | - | 633 | WP_000090892.1 | tail assembly protein | - |
| CP48_RS10795 () | 1849470..1850213 | - | 744 | WP_040091420.1 | C40 family peptidase | - |
| CP48_RS10800 () | 1850219..1850917 | - | 699 | WP_001152409.1 | phage minor tail protein L | - |
| CP48_RS10805 () | 1850927..1851256 | - | 330 | WP_000447253.1 | phage tail protein | - |
| CP48_RS10810 () | 1851256..1854320 | - | 3065 | Protein_1790 | phage tail tape measure protein | - |
| CP48_RS10815 () | 1854292..1854621 | - | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| CP48_RS10820 () | 1854630..1855016 | - | 387 | WP_001370402.1 | phage minor tail protein G | - |
| CP48_RS10825 () | 1855077..1855820 | - | 744 | WP_038355904.1 | phage tail protein | - |
| CP48_RS10830 () | 1855831..1856232 | - | 402 | WP_040090850.1 | phage minor tail U family protein | - |
| CP48_RS10835 () | 1856229..1856807 | - | 579 | WP_001506976.1 | phage tail protein | - |
| CP48_RS10840 () | 1856819..1857094 | - | 276 | WP_001283153.1 | DNA breaking-rejoining protein | - |
| CP48_RS10845 () | 1857087..1857410 | - | 324 | WP_040090846.1 | DUF2190 family protein | - |
| CP48_RS10850 () | 1857497..1859523 | - | 2027 | Protein_1798 | Clp protease ClpP | - |
| CP48_RS10855 () | 1859468..1861048 | - | 1581 | WP_011478361.1 | phage portal protein | - |
| CP48_RS10860 () | 1860976..1861188 | - | 213 | WP_001072975.1 | hypothetical protein | - |
| CP48_RS10865 () | 1861185..1863284 | - | 2100 | WP_001774468.1 | phage terminase large subunit family protein | - |
| CP48_RS10870 () | 1863293..1863832 | - | 540 | WP_000421825.1 | DUF1441 family protein | - |
| CP48_RS10875 () | 1863917..1865488 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| CP48_RS10880 () | 1865508..1865855 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| CP48_RS10885 () | 1865855..1866532 | - | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| CP48_RS10890 () | 1867100..1867306 | - | 207 | WP_001031431.1 | hypothetical protein | - |
| CP48_RS10895 () | 1867607..1868038 | + | 432 | WP_000035576.1 | DUF1398 domain-containing protein | - |
| CP48_RS10900 () | 1868190..1868363 | - | 174 | WP_001019139.1 | addiction module toxin, GnsA/GnsB family | - |
| CP48_RS10905 () | 1868535..1868690 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| CP48_RS31400 () | 1868770..1868835 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| CP48_RS28885 () | 1868838..1869026 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| CP48_RS10910 () | 1869037..1869249 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| CP48_RS10915 () | 1869612..1870109 | - | 498 | WP_040090187.1 | DUF2514 domain-containing protein | - |
| CP48_RS10920 () | 1870106..1870639 | - | 534 | WP_001092971.1 | lysozyme | - |
| CP48_RS10925 () | 1870636..1870947 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| CP48_RS10930 () | 1870952..1871167 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| CP48_RS32215 () | 1871387..1871557 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| CP48_RS10935 () | 1871921..1872136 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| CP48_RS10940 () | 1872437..1872649 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| CP48_RS31405 () | 1872704..1872793 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| CP48_RS10945 () | 1873071..1873823 | - | 753 | WP_001047135.1 | antitermination protein | - |
| CP48_RS10950 () | 1873837..1874886 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| CP48_RS10955 () | 1874888..1875166 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| CP48_RS10960 () | 1875233..1875484 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| CP48_RS10965 () | 1875701..1875856 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| CP48_RS10970 () | 1875928..1876215 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| CP48_RS10975 () | 1876215..1876454 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| CP48_RS28890 () | 1876479..1876784 | + | 306 | WP_071527819.1 | hypothetical protein | - |
| CP48_RS10980 () | 1876987..1877319 | + | 333 | WP_001317460.1 | FlxA-like family protein | - |
| CP48_RS10985 () | 1877756..1879096 | - | 1341 | WP_000589012.1 | ISNCY family transposase ISCARN112 | Transposase |
| CP48_RS10990 () | 1879130..1879549 | - | 420 | WP_001151196.1 | DUF977 family protein | - |
| CP48_RS10995 () | 1879590..1880555 | - | 966 | WP_000054504.1 | hypothetical protein | - |
| CP48_RS11000 () | 1880536..1881057 | - | 522 | WP_000705349.1 | hypothetical protein | - |
| CP48_RS11005 () | 1881041..1881268 | - | 228 | WP_000476993.1 | transcriptional regulator | - |
| CP48_RS11010 () | 1881346..1881753 | + | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| CP48_RS11015 () | 1881946..1882101 | + | 156 | WP_000379589.1 | DUF1391 family protein | - |
| CP48_RS11020 () | 1882103..1882678 | + | 576 | WP_000344954.1 | hypothetical protein | - |
| CP48_RS11025 () | 1883165..1883353 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| CP48_RS11030 () | 1883350..1883541 | + | 192 | WP_001083280.1 | lysis protein YdfD | - |
| CP48_RS11035 () | 1883635..1886106 | + | 2472 | WP_000048324.1 | exonuclease | - |
| CP48_RS11040 () | 1886179..1886430 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| CP48_RS11045 () | 1886465..1887745 | + | 1281 | WP_021533434.1 | Putative defective protein IntQ ; Integrase | Integrase |
| CP48_RS30560 () | 1887765..1887875 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| CP48_RS11050 () | 1887933..1888952 | - | 1020 | WP_021553635.1 | Zn-dependent oxidoreductase | - |
| CP48_RS11055 () | 1888964..1890178 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| CP48_RS11060 () | 1890384..1890710 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| CP48_RS11065 () | 1890845..1891186 | + | 342 | WP_040090190.1 | DUF1283 family protein | - |
| CP48_RS11070 () | 1891221..1891781 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| CP48_RS11075 () | 1891784..1892494 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| CP48_RS11080 () | 1892602..1892907 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|