MGE detailed information
MGE type: Prophage MGE length: 54523 bp
Accession: NZ_CP013662 Location: 1479909..1534431 Organism: Escherichia coli strain 08-00022 Replicon: chromosome
Accession: NZ_CP013662 Location: 1479909..1534431 Organism: Escherichia coli strain 08-00022 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CP48_RS08940 () | 1475104..1476108 | + | 1005 | WP_000994905.1 | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF | - |
| CP48_RS08945 () | 1476161..1476490 | - | 330 | WP_000366959.1 | HI1450 family dsDNA-mimic protein | - |
| CP48_RS08950 () | 1476525..1477985 | - | 1461 | WP_000214516.1 | cardiolipin synthase | - |
| CP48_RS31320 () | 1478128..1478301 | + | 174 | WP_001309467.1 | YciY family protein | - |
| CP48_RS08960 () | 1478356..1479609 | - | 1254 | WP_001299682.1 | voltage-gated potassium channel protein | - |
| CP48_RS08965 () | 1479909..1480205 | - | 297 | WP_000967595.1 | YciI family protein | - |
| CP48_RS08970 () | 1480429..1481148 | + | 720 | WP_000171276.1 | TonB system transport protein TonB | - |
| CP48_RS08975 () | 1481188..1481586 | - | 399 | WP_000108160.1 | acyl-CoA thioester hydrolase YciA | - |
| CP48_RS08980 () | 1481691..1482230 | - | 540 | WP_000808667.1 | septation protein A | - |
| CP48_RS08985 () | 1482260..1483003 | - | 744 | WP_000028540.1 | envelope biogenesis factor ElyC | - |
| CP48_RS28740 () | 1483031..1483120 | - | 90 | Protein_1428 | YkgJ family cysteine cluster protein | - |
| CP48_RS08990 () | 1483360..1483998 | + | 639 | WP_000737224.1 | outer membrane protein OmpW | - |
| CP48_RS08995 () | 1484044..1485174 | - | 1131 | WP_042966250.1 | hypothetical protein ; Integrase | Integrase |
| CP48_RS09000 () | 1485152..1485400 | - | 249 | WP_000113182.1 | excisionase | - |
| CP48_RS09005 () | 1485465..1487936 | - | 2472 | WP_042966249.1 | exonuclease | - |
| CP48_RS09010 () | 1488017..1488220 | - | 204 | WP_042966247.1 | DUF1482 family protein | - |
| CP48_RS09015 () | 1488217..1488405 | - | 189 | WP_000449183.1 | cell division inhibition protein DicB | - |
| CP48_RS28745 () | 1488620..1488883 | + | 264 | WP_001353256.1 | DUF1883 domain-containing protein | - |
| CP48_RS09020 () | 1488824..1489045 | - | 222 | WP_042966246.1 | hypothetical protein | - |
| CP48_RS09025 () | 1489410..1489619 | + | 210 | WP_042966244.1 | hypothetical protein | - |
| CP48_RS09030 () | 1489620..1490258 | - | 639 | WP_042966243.1 | hypothetical protein | - |
| CP48_RS09035 () | 1490400..1490555 | - | 156 | WP_052318772.1 | DUF1391 family protein | - |
| CP48_RS09040 () | 1490822..1491112 | - | 291 | WP_042966241.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CP48_RS09045 () | 1491112..1491303 | - | 192 | WP_042966240.1 | hypothetical protein | Antitoxin Detail |
| CP48_RS09050 () | 1491321..1491821 | - | 501 | WP_033812093.1 | helix-turn-helix transcriptional regulator | - |
| CP48_RS09055 () | 1491929..1492204 | + | 276 | WP_042966239.1 | helix-turn-helix domain-containing protein | - |
| CP48_RS09060 () | 1492188..1492613 | + | 426 | WP_047088917.1 | Rha family transcriptional regulator | - |
| CP48_RS31325 () | 1492685..1493719 | + | 1035 | WP_047088918.1 | pyocin large subunit | - |
| CP48_RS31330 () | 1493712..1494173 | + | 462 | WP_157845346.1 | replication protein | - |
| CP48_RS09075 () | 1494208..1494984 | + | 777 | WP_047088919.1 | DUF1627 domain-containing protein | - |
| CP48_RS09080 () | 1495000..1495422 | + | 423 | WP_047088920.1 | DUF977 family protein | - |
| CP48_RS09085 () | 1495446..1495907 | + | 462 | WP_187231401.1 | class I SAM-dependent methyltransferase | - |
| CP48_RS09090 () | 1495961..1496317 | + | 357 | WP_047088930.1 | hypothetical protein | - |
| CP48_RS09095 () | 1496367..1496579 | + | 213 | WP_047088922.1 | hypothetical protein | - |
| CP48_RS09100 () | 1496615..1497004 | + | 390 | WP_047088923.1 | hypothetical protein | - |
| CP48_RS09105 () | 1497296..1497451 | + | 156 | WP_042634465.1 | type I toxin-antitoxin system toxin HokD | - |
| CP48_RS30510 () | 1497618..1497896 | + | 279 | WP_047088925.1 | hypothetical protein | - |
| CP48_RS09120 () | 1497898..1498947 | + | 1050 | WP_047088926.1 | DUF968 domain-containing protein | - |
| CP48_RS09125 () | 1498960..1499334 | + | 375 | WP_047088927.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CP48_RS09130 () | 1499331..1500152 | + | 822 | WP_047088928.1 | antitermination protein | - |
| CP48_RS09135 () | 1500398..1501111 | + | 714 | WP_065225086.1 | hypothetical protein | - |
| CP48_RS09140 () | 1501210..1501650 | + | 441 | WP_077782118.1 | site-specific DNA-methyltransferase | - |
| CP48_RS09155 () | 1502261..1502803 | + | 543 | WP_047088987.1 | hypothetical protein | - |
| CP48_RS09160 () | 1503015..1503440 | + | 426 | Protein_1461 | tellurite resistance TerB family protein | - |
| CP48_RS09165 () | 1503437..1503589 | + | 153 | WP_000833650.1 | DUF3927 family protein | - |
| CP48_RS09170 () | 1503702..1503917 | + | 216 | WP_000839574.1 | class II holin family protein | - |
| CP48_RS09175 () | 1503917..1504414 | + | 498 | WP_047088988.1 | lysozyme RrrD | - |
| CP48_RS09180 () | 1504503..1504940 | + | 438 | WP_040091475.1 | lysis protein | - |
| CP48_RS09185 () | 1505013..1505594 | - | 582 | WP_040091473.1 | lipopolysaccharide core heptose(II)-phosphate phosphatase | - |
| CP48_RS09190 () | 1505989..1506285 | + | 297 | WP_040091471.1 | hypothetical protein | - |
| CP48_RS09200 () | 1506590..1507138 | + | 549 | WP_042966179.1 | terminase small subunit | - |
| CP48_RS09205 () | 1507110..1509025 | + | 1916 | Protein_1469 | phage terminase large subunit family protein | - |
| CP48_RS09210 () | 1509028..1509237 | + | 210 | WP_042966181.1 | gpW family protein | - |
| CP48_RS09215 () | 1509282..1510805 | + | 1524 | WP_052510525.1 | phage portal protein | - |
| CP48_RS09220 () | 1510795..1512411 | + | 1617 | WP_042966183.1 | S49 family peptidase | - |
| CP48_RS09225 () | 1512450..1512785 | + | 336 | WP_042966184.1 | head decoration protein | - |
| CP48_RS09230 () | 1512854..1513882 | + | 1029 | WP_042966185.1 | major capsid protein | - |
| CP48_RS09235 () | 1513933..1514298 | + | 366 | WP_000159745.1 | DNA breaking-rejoining protein | - |
| CP48_RS09240 () | 1514301..1514702 | + | 402 | WP_042966186.1 | hypothetical protein | - |
| CP48_RS09245 () | 1514683..1515405 | + | 723 | WP_042966187.1 | hypothetical protein | - |
| CP48_RS09250 () | 1515417..1515968 | + | 552 | WP_047088972.1 | hypothetical protein | - |
| CP48_RS09255 () | 1515952..1516575 | + | 624 | WP_040091456.1 | phage baseplate assembly protein V | - |
| CP48_RS09260 () | 1516609..1516965 | + | 357 | WP_040091455.1 | GPW/gp25 family protein | - |
| CP48_RS09265 () | 1516940..1517854 | + | 915 | WP_047088968.1 | baseplate J/gp47 family protein | - |
| CP48_RS09270 () | 1517847..1518437 | + | 591 | WP_040091453.1 | phage tail protein I | - |
| CP48_RS09275 () | 1518434..1519693 | + | 1260 | WP_064754567.1 | phage tail protein | - |
| CP48_RS09280 () | 1519720..1520247 | + | 528 | WP_040091481.1 | tail fiber assembly protein | - |
| CP48_RS09285 () | 1520302..1521777 | + | 1476 | WP_040091452.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CP48_RS09290 () | 1521774..1522292 | + | 519 | WP_000988219.1 | phage major tail tube protein | - |
| CP48_RS09295 () | 1522352..1522654 | + | 303 | WP_001291421.1 | phage tail assembly protein | - |
| CP48_RS31950 () | 1522654..1522791 | + | 138 | WP_157839838.1 | hypothetical protein | - |
| CP48_RS09300 () | 1522772..1524424 | + | 1653 | WP_047088967.1 | hypothetical protein | - |
| CP48_RS09305 () | 1524427..1524915 | + | 489 | WP_042966833.1 | phage tail protein | - |
| CP48_RS09310 () | 1524890..1525108 | + | 219 | WP_040091449.1 | tail protein X | - |
| CP48_RS09315 () | 1525099..1526187 | + | 1089 | WP_042966830.1 | phage late control protein | - |
| CP48_RS09320 () | 1526212..1528485 | + | 2274 | WP_065225016.1 | prophage tail fiber N-terminal domain-containing protein | - |
| CP48_RS09325 () | 1528500..1529087 | + | 588 | WP_042970650.1 | DUF4376 domain-containing protein | - |
| CP48_RS32185 () | 1529115..1529285 | + | 171 | WP_213054516.1 | hypothetical protein | - |
| CP48_RS31955 () | 1529497..1529640 | + | 144 | WP_000877738.1 | hypothetical protein | - |
| CP48_RS09330 () | 1529654..1531237 | - | 1584 | WP_040091524.1 | IS66 family transposase ISEc49 | Transposase |
| CP48_RS09335 () | 1531280..1531660 | - | 381 | WP_000957246.1 | IS66 family transposase ISEc49 | Transposase |
| CP48_RS09340 () | 1531647..1531976 | - | 330 | WP_001137792.1 | IS66 family transposase ISEc49 | Transposase |
| CP48_RS09345 () | 1532117..1532467 | - | 351 | Protein_1500 | ORF6N domain-containing protein | - |
| CP48_RS31960 () | 1532486..1532599 | - | 114 | WP_001307761.1 | hypothetical protein | - |
| CP48_RS28755 () | 1532926..1533054 | + | 129 | Protein_1502 | outer membrane protein OmpW | - |
| CP48_RS09350 () | 1533114..1533620 | - | 507 | WP_001079499.1 | ferritin-like domain-containing protein | - |
| CP48_RS09355 () | 1533666..1534166 | - | 501 | WP_001056491.1 | ferritin-like domain-containing protein | - |
| CP48_RS09360 () | 1534252..1534431 | - | 180 | WP_000807651.1 | general stress protein | - |
| CP48_RS09365 () | 1534812..1535618 | - | 807 | WP_000443055.1 | tryptophan synthase subunit alpha | - |
| CP48_RS09370 () | 1535618..1536811 | - | 1194 | WP_001409243.1 | tryptophan synthase subunit beta | - |
| CP48_RS09375 () | 1536823..1538184 | - | 1362 | WP_000983912.1 | bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|