MGE detailed information
MGE type: Mobilizable plasmid MGE length: 43676 bp
Accession: NZ_CP013268 Location: 1..43676 Organism: Sphingobium baderi strain DE-13 Replicon: plasmid pDE4
Accession: NZ_CP013268 Location: 1..43676 Organism: Sphingobium baderi strain DE-13 Replicon: plasmid pDE4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATN00_RS23535 () | 403..888 | - | 486 | WP_013038662.1 | hypothetical protein | - |
| ATN00_RS22185 () | 904..3837 | - | 2934 | WP_062069520.1 | Tn3 family transposase | - |
| ATN00_RS22190 () | 3985..4590 | + | 606 | WP_026109404.1 | recombinase family protein | - |
| ATN00_RS22195 () | 4587..5945 | + | 1359 | WP_007015766.1 | hypothetical protein | - |
| ATN00_RS22200 () | 5988..6952 | - | 965 | Protein_5 | IS5 family transposase | - |
| ATN00_RS23540 () | 6984..7289 | - | 306 | WP_156415418.1 | hypothetical protein | - |
| ATN00_RS22205 () | 7872..13529 | + | 5658 | WP_062069506.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| ATN00_RS22210 () | 13956..14321 | + | 366 | WP_004212937.1 | hypothetical protein | - |
| ATN00_RS22215 () | 14359..14754 | + | 396 | WP_062069509.1 | hypothetical protein | - |
| ATN00_RS22220 () | 14751..15713 | + | 963 | WP_004212934.1 | tyrosine-type recombinase/integrase | - |
| ATN00_RS22225 () | 15710..16330 | - | 621 | WP_062069522.1 | phosphoglycerate mutase family protein | - |
| ATN00_RS22230 () | 16340..16621 | - | 282 | WP_004212931.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| ATN00_RS22235 () | 16608..16874 | - | 267 | WP_004212930.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| ATN00_RS22240 () | 17278..17919 | + | 642 | WP_062069512.1 | hypothetical protein | - |
| ATN00_RS22245 () | 17995..18648 | + | 654 | WP_004212927.1 | AAA family ATPase | - |
| ATN00_RS22250 () | 18645..18959 | + | 315 | WP_004212926.1 | hypothetical protein | - |
| ATN00_RS22255 () | 19608..20072 | + | 465 | WP_031309919.1 | GNAT family N-acetyltransferase | - |
| ATN00_RS22260 () | 20162..21274 | - | 1113 | WP_062069515.1 | replication initiator protein A | - |
| ATN00_RS22265 () | 22008..22580 | - | 573 | Protein_19 | type IV secretory system conjugative DNA transfer family protein | - |
| ATN00_RS22270 () | 22644..23510 | - | 867 | WP_006961816.1 | recombinase family protein | - |
| ATN00_RS22275 () | 23653..26562 | - | 2910 | WP_006961814.1 | Tn3 family transposase | - |
| ATN00_RS22280 () | 27106..27519 | - | 414 | WP_156415420.1 | hypothetical protein | - |
| ATN00_RS22285 () | 27516..28427 | - | 912 | WP_062069517.1 | GGDEF domain-containing protein | - |
| ATN00_RS23195 () | 28789..28983 | - | 195 | WP_041386987.1 | helix-turn-helix transcriptional regulator | - |
| ATN00_RS22290 () | 29019..29756 | - | 738 | WP_013038672.1 | hypothetical protein | - |
| ATN00_RS22295 () | 29914..33039 | - | 3126 | WP_013038673.1 | Ti-type conjugative transfer relaxase TraA | - |
| ATN00_RS22300 () | 33216..33521 | + | 306 | WP_013038674.1 | conjugal transfer protein TraD | - |
| ATN00_RS22305 () | 33559..33795 | + | 237 | WP_013038675.1 | conjugal transfer protein TraD | - |
| ATN00_RS22310 () | 33788..34063 | + | 276 | WP_013038676.1 | hypothetical protein | - |
| ATN00_RS22315 () | 34060..34344 | + | 285 | WP_013038677.1 | hypothetical protein | - |
| ATN00_RS22320 () | 34341..35276 | + | 936 | WP_013038678.1 | HEPN domain-containing protein | - |
| ATN00_RS22325 () | 35273..35989 | + | 717 | WP_013038679.1 | SIMPL domain-containing protein | - |
| ATN00_RS22330 () | 35996..37657 | + | 1662 | WP_013038680.1 | type IV secretory system conjugative DNA transfer family protein | - |
| ATN00_RS22335 () | 37695..38156 | + | 462 | WP_013038681.1 | hypothetical protein | - |
| ATN00_RS22345 () | 39213..40316 | + | 1104 | WP_004213366.1 | replication initiator protein A | - |
| ATN00_RS22350 () | 40345..40629 | - | 285 | WP_013038654.1 | hypothetical protein | - |
| ATN00_RS22355 () | 40629..41264 | - | 636 | WP_004213364.1 | AAA family ATPase | - |
| ATN00_RS22360 () | 41386..42018 | - | 633 | WP_013038655.1 | transcription elongation protein SprT | - |
| ATN00_RS22365 () | 42437..42760 | + | 324 | WP_013038657.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| ATN00_RS22370 () | 42757..43038 | + | 282 | WP_013038658.1 | helix-turn-helix domain-containing protein | - |
| ATN00_RS22375 () | 43051..43287 | + | 237 | WP_013038659.1 | hypothetical protein | - |
| ATN00_RS22380 () | 43277..43459 | + | 183 | WP_013038660.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|