MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 112786 bp
Accession: NZ_CP013245 Location: 3408411..3521196 Organism: Pseudomonas aeruginosa strain VA-134 Replicon: chromosome
Accession: NZ_CP013245 Location: 3408411..3521196 Organism: Pseudomonas aeruginosa strain VA-134 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATC05_RS15695 () | 3403566..3404528 | + | 963 | WP_003094686.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| ATC05_RS15700 () | 3404525..3405253 | + | 729 | WP_003102588.1 | peptidoglycan editing factor PgeF | - |
| ATC05_RS15705 () | 3405409..3407973 | + | 2565 | WP_003094682.1 | ATP-dependent chaperone ClpB | - |
| ATC05_RS15725 () | 3408824..3410106 | - | 1283 | Protein_3109 | Tyrosine recombinase XerC ; Integrase | Integrase |
| ATC05_RS15730 () | 3410103..3412022 | - | 1920 | WP_043108110.1 | helicase/relaxase domain-containing protein | - |
| ATC05_RS30365 () | 3412235..3412591 | - | 357 | WP_071536022.1 | hypothetical protein | - |
| ATC05_RS15740 () | 3412976..3414169 | + | 1194 | WP_060627735.1 | fatty acid desaturase | - |
| ATC05_RS15745 () | 3414325..3416343 | - | 2019 | WP_023103448.1 | class I SAM-dependent methyltransferase | - |
| ATC05_RS15750 () | 3416452..3416946 | - | 495 | WP_016264190.1 | hypothetical protein | - |
| ATC05_RS15755 () | 3417050..3417412 | - | 363 | WP_016264191.1 | hypothetical protein | - |
| ATC05_RS15760 () | 3417486..3418214 | - | 729 | WP_003125105.1 | Crp/Fnr family transcriptional regulator | - |
| ATC05_RS15765 () | 3418420..3418644 | - | 225 | WP_023103447.1 | DUF1652 domain-containing protein | - |
| ATC05_RS29775 () | 3418658..3418921 | - | 264 | WP_016264192.1 | hypothetical protein | - |
| ATC05_RS15770 () | 3419486..3427999 | + | 8514 | WP_023103446.1 | Cyclic beta-(1,2)-glucan synthase NdvB | VF |
| ATC05_RS15775 () | 3428211..3428561 | - | 351 | WP_016264194.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| ATC05_RS15780 () | 3428565..3428837 | - | 273 | WP_023103444.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| ATC05_RS15785 () | 3429326..3430837 | - | 1512 | WP_023103443.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| ATC05_RS15790 () | 3430834..3431181 | - | 348 | WP_016264196.1 | hypothetical protein | - |
| ATC05_RS15795 () | 3431181..3432563 | - | 1383 | WP_003159687.1 | integrating conjugative element protein | - |
| ATC05_RS15800 () | 3432581..3433519 | - | 939 | WP_023103442.1 | TIGR03756 family integrating conjugative element protein | - |
| ATC05_RS15805 () | 3433519..3433950 | - | 432 | WP_079279831.1 | TIGR03757 family integrating conjugative element protein | - |
| ATC05_RS15810 () | 3434346..3434780 | - | 435 | WP_023103441.1 | DUF1090 domain-containing protein | - |
| ATC05_RS15815 () | 3435244..3435834 | + | 591 | WP_023103440.1 | putative major fimbrial subunit LpfA | VF |
| ATC05_RS15820 () | 3435910..3436629 | + | 720 | WP_023103439.1 | putative fimbrial chaperone YadV | VF |
| ATC05_RS15825 () | 3436722..3439241 | + | 2520 | WP_079279845.1 | Outer membrane usher protein FimD | VF |
| ATC05_RS15830 () | 3439243..3440244 | + | 1002 | WP_023103437.1 | fimbrial protein | - |
| ATC05_RS30370 () | 3440609..3441052 | - | 444 | WP_158509325.1 | IS3 family transposase | - |
| ATC05_RS15845 () | 3441305..3442467 | + | 1163 | WP_096243049.1 | IS3 family transposase IS222 | Transposase |
| ATC05_RS29795 () | 3442442..3442702 | - | 261 | WP_070698115.1 | transposase | - |
| ATC05_RS15850 () | 3442789..3443406 | - | 618 | WP_060627738.1 | Putative transcriptional regulator | VF |
| ATC05_RS15855 () | 3444159..3444554 | - | 396 | Protein_3136 | thioredoxin domain-containing protein | - |
| ATC05_RS15860 () | 3444551..3444835 | - | 285 | WP_003086159.1 | hypothetical protein | - |
| ATC05_RS15865 () | 3444832..3447774 | - | 2943 | WP_023103432.1 | conjugative transfer ATPase | - |
| ATC05_RS15870 () | 3447774..3448217 | - | 444 | WP_017001414.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| ATC05_RS15875 () | 3448195..3449700 | - | 1506 | WP_023103431.1 | TIGR03752 family integrating conjugative element protein | - |
| ATC05_RS15880 () | 3449684..3450565 | - | 882 | WP_023103430.1 | TIGR03749 family integrating conjugative element protein | - |
| ATC05_RS15885 () | 3450562..3451221 | - | 660 | WP_003086164.1 | TIGR03746 family integrating conjugative element protein | - |
| ATC05_RS15890 () | 3451218..3451604 | - | 387 | WP_003134190.1 | TIGR03750 family conjugal transfer protein | - |
| ATC05_RS15895 () | 3451615..3451971 | - | 357 | WP_023103429.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| ATC05_RS15900 () | 3451989..3452228 | - | 240 | WP_031634739.1 | TIGR03758 family integrating conjugative element protein | - |
| ATC05_RS15905 () | 3452225..3452563 | - | 339 | WP_031634736.1 | RAQPRD family integrative conjugative element protein | - |
| ATC05_RS15910 () | 3452738..3452983 | - | 246 | Protein_3147 | putative fimbrial chaperone LpfB | VF |
| ATC05_RS15915 () | 3453575..3454222 | - | 648 | WP_023103426.1 | Transcriptional regulatory protein RcsB | VF |
| ATC05_RS15920 () | 3454293..3457517 | - | 3225 | WP_060627740.1 | Sensor histidine kinase RcsC | VF |
| ATC05_RS15925 () | 3457603..3458796 | - | 1194 | WP_023103424.1 | EAL domain-containing response regulator | - |
| ATC05_RS15930 () | 3458783..3461602 | - | 2820 | WP_023103423.1 | Sensor histidine kinase RcsC | VF |
| ATC05_RS29805 () | 3461851..3462030 | - | 180 | Protein_3152 | transposase | - |
| ATC05_RS29810 () | 3462205..3462651 | - | 447 | Protein_3153 | putative fimbrial chaperone LpfB | VF |
| ATC05_RS15940 () | 3462667..3463413 | - | 747 | WP_023103421.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| ATC05_RS15945 () | 3463413..3465644 | - | 2232 | WP_023103420.1 | type IV conjugative transfer system coupling protein TraD | - |
| ATC05_RS15950 () | 3465648..3465917 | - | 270 | WP_003109386.1 | hypothetical protein | - |
| ATC05_RS15955 () | 3465926..3466426 | - | 501 | WP_023103419.1 | integrating conjugative element protein | - |
| ATC05_RS15960 () | 3466423..3467004 | - | 582 | WP_015648301.1 | hypothetical protein | VF |
| ATC05_RS15965 () | 3466989..3467744 | - | 756 | WP_023103418.1 | TIGR03759 family integrating conjugative element protein | - |
| ATC05_RS15970 () | 3467755..3468444 | - | 690 | WP_023103417.1 | hypothetical protein | - |
| ATC05_RS15975 () | 3468683..3470917 | + | 2235 | WP_023103416.1 | CRISPR-associated helicase/endonuclease Cas3 | - |
| ATC05_RS15980 () | 3470968..3471642 | + | 675 | WP_023103415.1 | type I-C CRISPR-associated protein Cas5 | - |
| ATC05_RS15985 () | 3471639..3473402 | + | 1764 | WP_023103414.1 | type I-C CRISPR-associated protein Cas8c/Csd1 | - |
| ATC05_RS15990 () | 3473414..3474283 | + | 870 | WP_023103413.1 | type I-C CRISPR-associated protein Cas7/Csd2 | - |
| ATC05_RS15995 () | 3474302..3474934 | + | 633 | WP_023103412.1 | CRISPR-associated protein Cas4 | - |
| ATC05_RS16000 () | 3474938..3475977 | + | 1040 | Protein_3166 | type I-C CRISPR-associated endonuclease Cas1 | - |
| ATC05_RS16005 () | 3475987..3476277 | + | 291 | WP_023103410.1 | CRISPR-associated endonuclease Cas2 | - |
| ATC05_RS30505 () | 3477404..3477550 | - | 147 | WP_023103409.1 | hypothetical protein | - |
| ATC05_RS16010 () | 3477642..3477896 | - | 255 | WP_023103408.1 | hypothetical protein | - |
| ATC05_RS16015 () | 3477964..3478326 | - | 363 | WP_023103407.1 | hypothetical protein | - |
| ATC05_RS16020 () | 3478396..3478677 | - | 282 | WP_017002267.1 | hypothetical protein | - |
| ATC05_RS16025 () | 3478674..3479306 | - | 633 | Protein_3172 | DUF3275 family protein | - |
| ATC05_RS16030 () | 3479363..3479713 | - | 351 | WP_023103405.1 | hypothetical protein | - |
| ATC05_RS16035 () | 3479949..3480656 | - | 708 | WP_033951905.1 | hypothetical protein | - |
| ATC05_RS16040 () | 3481141..3481338 | - | 198 | WP_023103403.1 | hypothetical protein | - |
| ATC05_RS30590 () | 3481412..3481570 | - | 159 | WP_003134147.1 | hypothetical protein | - |
| ATC05_RS16045 () | 3481707..3482195 | - | 489 | WP_004347954.1 | DUF3577 domain-containing protein | - |
| ATC05_RS16055 () | 3482907..3483296 | - | 390 | WP_023103402.1 | hypothetical protein | - |
| ATC05_RS16060 () | 3484211..3484648 | - | 438 | WP_023103401.1 | hypothetical protein | VF |
| ATC05_RS16065 () | 3484677..3486005 | - | 1329 | WP_023103400.1 | hypothetical protein | VF |
| ATC05_RS16070 () | 3486010..3486951 | - | 942 | WP_003134125.1 | Flp pilus assembly complex ATPase component TadA | - |
| ATC05_RS16075 () | 3486948..3487478 | - | 531 | WP_003099765.1 | hypothetical protein | VF |
| ATC05_RS16080 () | 3487500..3488579 | - | 1080 | WP_023103399.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| ATC05_RS16085 () | 3488579..3490159 | - | 1581 | WP_023103398.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| ATC05_RS16090 () | 3490168..3490701 | - | 534 | WP_023103397.1 | type IV pilus biogenesis protein PilP | - |
| ATC05_RS16095 () | 3490691..3492016 | - | 1326 | WP_023103396.1 | type 4b pilus protein PilO2 | - |
| ATC05_RS16100 () | 3492020..3493729 | - | 1710 | WP_016264244.1 | Outer membrane lipoprotein BfpB | VF |
| ATC05_RS16105 () | 3493729..3494853 | - | 1125 | WP_023103395.1 | hypothetical protein | VF |
| ATC05_RS16110 () | 3494940..3496913 | - | 1974 | WP_023103394.1 | DEAD/DEAH box helicase | - |
| ATC05_RS16115 () | 3496910..3498799 | - | 1890 | WP_023103393.1 | hypothetical protein | - |
| ATC05_RS16120 () | 3499480..3500232 | - | 753 | WP_023103392.1 | hypothetical protein | - |
| ATC05_RS16125 () | 3500240..3502159 | - | 1920 | WP_023103391.1 | type I DNA topoisomerase | - |
| ATC05_RS16130 () | 3502435..3502665 | + | 231 | WP_031634724.1 | antitoxin | Antitoxin Detail |
| ATC05_RS16135 () | 3502665..3503075 | + | 411 | WP_003134109.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| ATC05_RS16140 () | 3503091..3503285 | + | 195 | WP_023103390.1 | hypothetical protein | - |
| ATC05_RS30375 () | 3503587..3503763 | - | 177 | WP_126546597.1 | CrpP family protein | - |
| ATC05_RS16150 () | 3503975..3504463 | - | 489 | WP_023103388.1 | single-stranded DNA-binding protein | - |
| ATC05_RS16155 () | 3504477..3505010 | - | 534 | WP_023103387.1 | DUF3158 family protein | - |
| ATC05_RS16160 () | 3505016..3505744 | - | 729 | WP_023103386.1 | TIGR03761 family integrating conjugative element protein | - |
| ATC05_RS30380 () | 3505737..3506156 | - | 420 | WP_140419861.1 | hypothetical protein | - |
| ATC05_RS16170 () | 3506185..3506424 | - | 240 | WP_003149503.1 | hypothetical protein | - |
| ATC05_RS29830 () | 3506415..3506660 | - | 246 | WP_023103385.1 | hypothetical protein | - |
| ATC05_RS16175 () | 3506657..3507982 | - | 1326 | WP_023103384.1 | hypothetical protein | - |
| ATC05_RS16180 () | 3507979..3508746 | - | 768 | WP_023098069.1 | DUF2857 domain-containing protein | - |
| ATC05_RS16185 () | 3508774..3510513 | - | 1740 | WP_031634718.1 | ParB family protein | - |
| ATC05_RS16190 () | 3510510..3510758 | - | 249 | WP_016254076.1 | Arc family DNA-binding protein | - |
| ATC05_RS16195 () | 3510761..3511777 | - | 1017 | WP_023103382.1 | nucleoid-associated protein YejK | - |
| ATC05_RS16200 () | 3511777..3512010 | - | 234 | WP_003103841.1 | hypothetical protein | - |
| ATC05_RS30385 () | 3512003..3512497 | - | 495 | WP_126546598.1 | hypothetical protein | - |
| ATC05_RS16210 () | 3512490..3512747 | - | 258 | WP_023103380.1 | hypothetical protein | - |
| ATC05_RS16215 () | 3512744..3513271 | - | 528 | WP_023103379.1 | hypothetical protein | - |
| ATC05_RS30510 () | 3513624..3514070 | + | 447 | WP_003117028.1 | hypothetical protein | - |
| ATC05_RS16230 () | 3514509..3515852 | - | 1344 | WP_023103377.1 | replicative DNA helicase | - |
| ATC05_RS16235 () | 3515849..3516073 | - | 225 | WP_003134074.1 | hypothetical protein | - |
| ATC05_RS16240 () | 3516057..3516764 | - | 708 | WP_016264259.1 | HNH endonuclease | - |
| ATC05_RS16245 () | 3516761..3517462 | - | 702 | WP_009315890.1 | DUF2786 domain-containing protein | - |
| ATC05_RS16250 () | 3517462..3518148 | - | 687 | WP_003141374.1 | hypothetical protein | - |
| ATC05_RS16255 () | 3518145..3518966 | - | 822 | WP_162839728.1 | hypothetical protein | - |
| ATC05_RS16260 () | 3518972..3519469 | - | 498 | WP_023103375.1 | hypothetical protein | - |
| ATC05_RS16265 () | 3519466..3520197 | - | 732 | WP_023103374.1 | hypothetical protein | - |
| ATC05_RS16270 () | 3520199..3521059 | - | 861 | WP_023094840.1 | ParA family protein | - |
| ATC05_RS16280 () | 3521425..3525624 | - | 4200 | WP_060627742.1 | two-partner secretion system exoprotein TpsA4 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|