MGE detailed information
MGE type: Genomic_island MGE length: 58442 bp
Accession: NZ_CP013070 Location: 2530645..2589086 Organism: Sphingobium indicum B90A Replicon: chromosome
Accession: NZ_CP013070 Location: 2530645..2589086 Organism: Sphingobium indicum B90A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SIDU_RS12215 () | 2526111..2526887 | + | 777 | WP_007683436.1 | SDR family oxidoreductase | - |
| SIDU_RS12220 () | 2526884..2527681 | + | 798 | WP_007683434.1 | SDR family oxidoreductase | - |
| SIDU_RS12225 () | 2528243..2529109 | + | 867 | WP_007683431.1 | OmpA family protein | - |
| SIDU_RS12230 () | 2529244..2529567 | - | 324 | WP_025772245.1 | hypothetical protein | - |
| SIDU_RS12235 () | 2529753..2530043 | + | 291 | WP_007683429.1 | hypothetical protein | - |
| SIDU_RS12240 () | 2530393..2530596 | + | 204 | WP_007683427.1 | hypothetical protein | - |
| SIDU_RS19665 () | 2530645..2530857 | - | 213 | WP_129965683.1 | hypothetical protein | - |
| SIDU_RS12245 () | 2530928..2532700 | - | 1773 | WP_014072624.1 | ATP-dependent helicase | - |
| SIDU_RS12250 () | 2532693..2534759 | - | 2067 | WP_007683423.1 | ATP-dependent endonuclease | - |
| SIDU_RS12255 () | 2534919..2538359 | - | 3441 | WP_007683421.1 | YhaN family protein | - |
| SIDU_RS12260 () | 2538362..2539615 | - | 1254 | WP_007683419.1 | DNA repair exonuclease | - |
| SIDU_RS12265 () | 2539707..2543177 | - | 3471 | WP_007683417.1 | DNA methyltransferase | - |
| SIDU_RS12270 () | 2543257..2544141 | - | 885 | WP_073507149.1 | DNA transfer protein | - |
| SIDU_RS12275 () | 2544131..2546095 | - | 1965 | WP_007683415.1 | Protein VirD4 | VF |
| SIDU_RS12280 () | 2546079..2547083 | - | 1005 | WP_007683413.1 | Type IV secretion system protein VirB11 | VF |
| SIDU_RS12285 () | 2547087..2548304 | - | 1218 | WP_014072617.1 | Type IV secretion system protein virB10 | VF |
| SIDU_RS12290 () | 2548308..2549165 | - | 858 | WP_007683410.1 | Type IV secretion system protein virB9 | VF |
| SIDU_RS12295 () | 2549162..2549860 | - | 699 | WP_007683408.1 | Type IV secretion system protein virB8 | VF |
| SIDU_RS12305 () | 2550197..2551141 | - | 945 | WP_007683405.1 | type IV secretion system protein | - |
| SIDU_RS19670 () | 2551163..2551381 | - | 219 | WP_150132838.1 | EexN family lipoprotein | - |
| SIDU_RS12310 () | 2551378..2552091 | - | 714 | WP_007683402.1 | type IV secretion system protein | - |
| SIDU_RS12315 () | 2552095..2554512 | - | 2418 | WP_007683400.1 | Type IV secretion system protein virB4 | VF |
| SIDU_RS12320 () | 2554499..2554849 | - | 351 | WP_007683398.1 | Type IV secretion system protein virB3 | VF |
| SIDU_RS12325 () | 2554846..2555184 | - | 339 | WP_007683396.1 | TrbC/VirB2 family protein | - |
| SIDU_RS12330 () | 2555181..2555846 | - | 666 | WP_007683393.1 | Type IV secretion system protein virB1 | VF |
| SIDU_RS12335 () | 2555843..2556181 | - | 339 | WP_009823965.1 | hypothetical protein | - |
| SIDU_RS12340 () | 2556245..2557177 | - | 933 | WP_007683389.1 | phytanoyl-CoA dioxygenase family protein | - |
| SIDU_RS12345 () | 2557189..2557800 | - | 612 | WP_007683387.1 | 4-coumaroyl-homoserine lactone synthase | VF |
| SIDU_RS12350 () | 2557875..2558621 | - | 747 | WP_007683385.1 | LuxR family transcriptional regulator | - |
| SIDU_RS12355 () | 2558635..2559396 | - | 762 | WP_007683383.1 | LuxR family transcriptional regulator | - |
| SIDU_RS12360 () | 2559618..2560187 | + | 570 | WP_013039076.1 | hypothetical protein | - |
| SIDU_RS12365 () | 2560122..2560976 | - | 855 | WP_007683381.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| SIDU_RS12370 () | 2560973..2561236 | - | 264 | WP_007683380.1 | DUF2933 domain-containing protein | - |
| SIDU_RS12375 () | 2561489..2562937 | + | 1449 | WP_013849921.1 | MBL fold/beta-CASP domain-containing RNA metallo-hydrolase | - |
| SIDU_RS12380 () | 2562934..2564472 | + | 1539 | WP_007683378.1 | thymidine phosphorylase family protein | - |
| SIDU_RS12385 () | 2564469..2565377 | + | 909 | WP_007683377.1 | ribose-phosphate pyrophosphokinase | - |
| SIDU_RS12395 () | 2565940..2566575 | + | 636 | WP_007683376.1 | Transcriptional regulatory protein FixJ | VF |
| SIDU_RS12400 () | 2566602..2567000 | - | 399 | WP_004212744.1 | Cu(I)-responsive transcriptional regulator | - |
| SIDU_RS12405 () | 2566997..2569354 | - | 2358 | WP_007683374.1 | heavy metal translocating P-type ATPase | - |
| SIDU_RS19075 () | 2569454..2569712 | - | 259 | Protein_2449 | hypothetical protein | - |
| SIDU_RS12410 () | 2569749..2570693 | - | 945 | WP_007683373.1 | copper homeostasis membrane protein CopD | - |
| SIDU_RS12415 () | 2570698..2571075 | - | 378 | WP_007683372.1 | copper homeostasis periplasmic binding protein CopC | - |
| SIDU_RS12420 () | 2571209..2571481 | + | 273 | WP_007683370.1 | hypothetical protein | - |
| SIDU_RS12425 () | 2571481..2571921 | + | 441 | WP_007683368.1 | periplasmic heavy metal sensor | - |
| SIDU_RS12430 () | 2571918..2572484 | + | 567 | WP_007683367.1 | RNA polymerase sigma factor | - |
| SIDU_RS12435 () | 2572551..2574476 | + | 1926 | WP_007683365.1 | copper resistance system multicopper oxidase | - |
| SIDU_RS12440 () | 2574476..2575624 | + | 1149 | WP_007683363.1 | copper resistance protein B | - |
| SIDU_RS12445 () | 2575715..2576188 | + | 474 | WP_007683361.1 | DUF305 domain-containing protein | - |
| SIDU_RS12450 () | 2576247..2577782 | + | 1536 | WP_007683359.1 | PAS domain S-box protein | - |
| SIDU_RS12455 () | 2577772..2578395 | + | 624 | WP_007683357.1 | Transcriptional regulatory protein FixJ | VF |
| SIDU_RS12460 () | 2578477..2578884 | + | 408 | WP_007683354.1 | Response regulator protein TodT | VF |
| SIDU_RS12465 () | 2578947..2579297 | - | 351 | WP_007683352.1 | magnesium transporter | - |
| SIDU_RS12470 () | 2579663..2579944 | - | 282 | WP_004212690.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| SIDU_RS12475 () | 2579931..2580194 | - | 264 | WP_004212689.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| SIDU_RS12485 () | 2580579..2581016 | - | 438 | WP_007683347.1 | metal-binding protein | - |
| SIDU_RS12490 () | 2581096..2582337 | - | 1242 | WP_007683345.1 | MFS transporter | - |
| SIDU_RS12495 () | 2582331..2583317 | - | 987 | WP_009823975.1 | copper resistance protein B | - |
| SIDU_RS12500 () | 2583314..2585020 | - | 1707 | WP_007683343.1 | copper resistance system multicopper oxidase | - |
| SIDU_RS12505 () | 2585046..2586071 | - | 1026 | WP_007683342.1 | alcohol dehydrogenase AdhP | - |
| SIDU_RS12510 () | 2586098..2587618 | - | 1521 | WP_007683341.1 | aldehyde dehydrogenase | - |
| SIDU_RS12515 () | 2588061..2588255 | - | 195 | WP_013039103.1 | hypothetical protein | - |
| SIDU_RS12525 () | 2588796..2589086 | - | 291 | WP_013039105.1 | hypothetical protein | - |
| SIDU_RS12530 () | 2589218..2589658 | - | 441 | WP_007683338.1 | four-helix bundle copper-binding protein | - |
| SIDU_RS12535 () | 2589673..2590116 | - | 444 | WP_007683337.1 | DUF1622 domain-containing protein | - |
| SIDU_RS12540 () | 2590103..2590825 | - | 723 | WP_007406380.1 | hypothetical protein | - |
| SIDU_RS12545 () | 2590822..2591550 | - | 729 | WP_007406424.1 | hypothetical protein | - |
| SIDU_RS12550 () | 2591550..2593460 | - | 1911 | WP_013039106.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| SIDU_RS12555 () | 2593484..2593804 | - | 321 | WP_007406382.1 | hypothetical protein | - |
| SIDU_RS12560 () | 2593864..2594085 | - | 222 | WP_007406426.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|