MGE detailed information
MGE type: Genomic_island MGE length: 23179 bp
Accession: NZ_CP013004 Location: 202575..225753 Organism: Xanthomonas citri pv. malvacearum strain XcmH1005 Replicon: chromosome
Accession: NZ_CP013004 Location: 202575..225753 Organism: Xanthomonas citri pv. malvacearum strain XcmH1005 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APY29_RS00855 () | 201029..201535 | - | 507 | Protein_161 | hypothetical protein | - |
| APY29_RS00860 () | 201534..201866 | + | 333 | WP_078566249.1 | hypothetical protein | - |
| APY29_RS00865 () | 202053..202442 | - | 390 | WP_078566250.1 | hypothetical protein | - |
| APY29_RS24825 () | 202575..202790 | - | 216 | WP_160168843.1 | hypothetical protein | - |
| APY29_RS00875 () | 203099..203389 | + | 291 | WP_003490957.1 | hypothetical protein | - |
| APY29_RS00880 () | 203410..203787 | + | 378 | WP_078566251.1 | TrbC/VirB2 family protein | - |
| APY29_RS00885 () | 203784..204083 | + | 300 | WP_003490875.1 | VirB3 family type IV secretion system protein | - |
| APY29_RS00890 () | 204106..206739 | + | 2634 | Protein_168 | Type IV secretion system protein virB4 | VF |
| APY29_RS00895 () | 206736..207404 | + | 669 | WP_015462618.1 | VirB5 protein | - |
| APY29_RS00900 () | 207452..207664 | + | 213 | WP_005931790.1 | hypothetical protein | - |
| APY29_RS00905 () | 207657..208037 | + | 381 | WP_039447706.1 | hypothetical protein | - |
| APY29_RS00910 () | 208039..208905 | + | 867 | WP_078566252.1 | type IV secretion system protein | - |
| APY29_RS00915 () | 208902..209576 | + | 675 | WP_003490888.1 | type IV secretion system protein | - |
| APY29_RS00920 () | 209601..210383 | + | 783 | WP_011052985.1 | Type IV secretion system protein virB9 | VF |
| APY29_RS00925 () | 210385..211605 | + | 1221 | WP_078566253.1 | Type IV secretion system protein virB10 | VF |
| APY29_RS00930 () | 211616..212638 | + | 1023 | WP_078566254.1 | Type IV secretion system protein VirB11 | VF |
| APY29_RS00935 () | 212649..213518 | + | 870 | WP_078566255.1 | Type IV secretion system protein virB1 | VF |
| APY29_RS00940 () | 213644..214063 | + | 420 | WP_078566256.1 | hypothetical protein | - |
| APY29_RS00945 () | 214140..214526 | + | 387 | WP_003491149.1 | hypothetical protein | - |
| APY29_RS00950 () | 214669..214887 | + | 219 | WP_003491150.1 | antitoxin MazE family protein | Antitoxin Detail |
| APY29_RS00955 () | 214884..215210 | + | 327 | WP_003491151.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| APY29_RS00960 () | 215279..218254 | - | 2976 | WP_089504402.1 | conjugative relaxase | - |
| APY29_RS00965 () | 218268..219841 | - | 1574 | Protein_183 | type IV secretion system DNA-binding domain-containing protein | - |
| APY29_RS24830 () | 219845..220018 | - | 174 | WP_164722239.1 | hypothetical protein | - |
| APY29_RS00970 () | 220018..220413 | - | 396 | WP_039447651.1 | hypothetical protein | - |
| APY29_RS00975 () | 220772..221218 | + | 447 | WP_017160486.1 | hypothetical protein | - |
| APY29_RS00980 () | 221227..221922 | + | 696 | WP_017154898.1 | hypothetical protein | - |
| APY29_RS00985 () | 221970..222323 | + | 354 | WP_017160495.1 | hypothetical protein | - |
| APY29_RS00990 () | 222461..222742 | - | 282 | WP_017158383.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| APY29_RS00995 () | 222729..222998 | - | 270 | WP_017158384.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| APY29_RS01000 () | 223107..223553 | - | 447 | WP_089504520.1 | resolvase | - |
| APY29_RS01005 () | 224267..225412 | - | 1146 | WP_025990656.1 | IS256 family transposase ISXax1 | Transposase |
| APY29_RS01010 () | 225810..226181 | - | 372 | Protein_193 | recombinase family protein | - |
| APY29_RS01020 () | 226733..227014 | - | 282 | WP_017161425.1 | hypothetical protein | - |
| APY29_RS01025 () | 227038..227736 | - | 699 | WP_078538983.1 | AAA family ATPase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|