MGE detailed information
MGE type: Prophage MGE length: 50202 bp
Accession: NZ_CP012870 Location: 4344654..4394855 Organism: Escherichia coli strain K-12 substr. MG1655_TMP32XR2 Replicon: chromosome
Accession: NZ_CP012870 Location: 4344654..4394855 Organism: Escherichia coli strain K-12 substr. MG1655_TMP32XR2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QR63_RS21440 () | 4339788..4340744 | + | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| QR63_RS21445 () | 4340741..4342939 | + | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| QR63_RS21450 () | 4342949..4343905 | + | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| QR63_RS21455 () | 4343956..4344294 | + | 339 | Protein_4083 | LysR family transcriptional regulator | - |
| QR63_RS21465 () | 4344579..4345979 | + | 1401 | WP_001407714.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| QR63_RS21470 () | 4346096..4346536 | + | 441 | WP_000224818.1 | hypothetical protein | - |
| QR63_RS21475 () | 4346533..4346757 | + | 225 | WP_001272156.1 | helix-turn-helix domain-containing protein | - |
| QR63_RS21480 () | 4346876..4347730 | + | 855 | WP_000072039.1 | hypothetical protein | - |
| QR63_RS21485 () | 4347757..4348455 | + | 699 | WP_001214248.1 | recombinase family protein | - |
| QR63_RS21490 () | 4348727..4349353 | + | 627 | WP_000860996.1 | inovirus Gp2 family protein | - |
| QR63_RS21495 () | 4349444..4350274 | - | 831 | Protein_4090 | type III restriction endonuclease subunit R | - |
| QR63_RS21500 () | 4350329..4351026 | + | 698 | Protein_4091 | IS1 family transposase IS1R | Transposase |
| QR63_RS24725 () | 4351043..4351246 | - | 204 | Protein_4092 | DUF3987 domain-containing protein | - |
| QR63_RS26220 () | 4351305..4351400 | + | 96 | WP_211180486.1 | putative translational regulatory protein ArgL | - |
| QR63_RS21505 () | 4351370..4352374 | + | 1005 | WP_001281825.1 | Ornithine carbamoyltransferase subunit F | VF |
| QR63_RS21510 () | 4352513..4353271 | + | 759 | WP_001121657.1 | DNA-binding transcriptional repressor XynR | - |
| QR63_RS21515 () | 4353276..4354886 | - | 1611 | WP_000406871.1 | glycoside hydrolase family 43 protein | - |
| QR63_RS21520 () | 4354898..4356280 | - | 1383 | WP_000192863.1 | MFS transporter | - |
| QR63_RS21525 () | 4356507..4358474 | - | 1968 | WP_000151261.1 | xylonate dehydratase YagF | - |
| QR63_RS21530 () | 4358489..4359397 | - | 909 | WP_001136613.1 | 2-keto-3-deoxygluconate aldolase | - |
| QR63_RS21535 () | 4359692..4360846 | + | 1155 | WP_010723086.1 | IS481 family transposase ISEc19 | Transposase |
| QR63_RS21540 () | 4360940..4361290 | + | 351 | WP_001030800.1 | type IV toxin-antitoxin system antitoxin YagB | - |
| QR63_RS21545 () | 4361313..4361561 | + | 249 | Protein_4102 | IS3 family transposase ISEhe3 | Transposase |
| QR63_RS24730 () | 4361571..4361744 | - | 174 | Protein_4103 | IS30 family transposase | - |
| QR63_RS21550 () | 4361800..4362497 | + | 698 | Protein_4104 | IS1 family transposase IS1R | Transposase |
| QR63_RS21555 () | 4362514..4362861 | + | 348 | Protein_4105 | ABC transporter permease subunit | - |
| QR63_RS21560 () | 4362873..4363919 | + | 1047 | WP_000192349.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| QR63_RS21565 () | 4364028..4364960 | - | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| QR63_RS21570 () | 4364947..4366350 | - | 1404 | WP_001393629.1 | S-methylmethionine permease | - |
| QR63_RS21575 () | 4366594..4367574 | + | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| QR63_RS21580 () | 4367722..4368813 | - | 1092 | Protein_4110 | group II intron reverse transcriptase/maturase | - |
| QR63_RS21595 () | 4369486..4369911 | - | 426 | Protein_4111 | IS3 family transposase | - |
| QR63_RS21600 () | 4369921..4371072 | - | 1152 | WP_001254938.1 | IS30 family transposase IS30D | Transposase |
| QR63_RS21605 () | 4371140..4371397 | - | 258 | Protein_4113 | IS3 family transposase ISEc52 | Transposase |
| QR63_RS21610 () | 4371493..4372386 | + | 894 | WP_000770246.1 | LysR family transcriptional regulator | - |
| QR63_RS21615 () | 4372715..4373578 | + | 864 | WP_001065553.1 | GTPase family protein | - |
| QR63_RS21620 () | 4373670..4374491 | + | 822 | WP_000197389.1 | DUF945 domain-containing protein | - |
| QR63_RS25840 () | 4374708..4374899 | + | 192 | Protein_4117 | DeoR family transcriptional regulator | - |
| QR63_RS25845 () | 4374895..4375122 | + | 228 | WP_001548158.1 | hypothetical protein | - |
| QR63_RS25850 () | 4375122..4375565 | + | 444 | WP_000824223.1 | hypothetical protein | - |
| QR63_RS21635 () | 4375588..4376055 | + | 468 | WP_001547765.1 | hypothetical protein | - |
| QR63_RS21640 () | 4376132..4376371 | + | 240 | WP_000194654.1 | DUF905 domain-containing protein | - |
| QR63_RS21645 () | 4376469..4376927 | + | 459 | WP_000211838.1 | antirestriction protein | - |
| QR63_RS21650 () | 4376943..4377419 | + | 477 | WP_000811693.1 | RadC family protein | - |
| QR63_RS24760 () | 4377428..4377649 | + | 222 | WP_000691994.1 | DUF987 domain-containing protein | - |
| QR63_RS21655 () | 4377668..4377985 | + | 318 | WP_000070395.1 | type IV toxin-antitoxin system antitoxin YafW | Antitoxin Detail |
| QR63_RS21660 () | 4378006..4378347 | + | 342 | WP_000854672.1 | type IV toxin-antitoxin system toxin YkfI | Toxin Detail |
| QR63_RS21670 () | 4378919..4380172 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| QR63_RS21675 () | 4380184..4381287 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| QR63_RS21680 () | 4381575..4382630 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| QR63_RS21685 () | 4382669..4383007 | - | 339 | Protein_4130 | sigma factor-binding protein Crl | - |
| QR63_RS21690 () | 4383062..4383759 | + | 698 | Protein_4131 | IS1 family transposase IS1A | Transposase |
| QR63_RS25855 () | 4383769..4383861 | - | 93 | Protein_4132 | Crl family RNA polymerase assembly factor | - |
| QR63_RS21695 () | 4383919..4385163 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| - () | 4384579..4384659 | - | 81 | NuclAT_12 | - | - |
| - () | 4384579..4384659 | - | 81 | NuclAT_12 | - | - |
| - () | 4384579..4384659 | - | 81 | NuclAT_12 | - | - |
| - () | 4384579..4384659 | - | 81 | NuclAT_12 | - | - |
| QR63_RS21700 () | 4385255..4385713 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| QR63_RS21705 () | 4385974..4387431 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| QR63_RS21710 () | 4387488..4388009 | - | 522 | Protein_4136 | peptide chain release factor H | - |
| QR63_RS21715 () | 4388005..4388211 | - | 207 | Protein_4137 | RtcB family protein | - |
| QR63_RS21720 () | 4388529..4388981 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| QR63_RS21725 () | 4388991..4389389 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| QR63_RS21730 () | 4389392..4389685 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| QR63_RS21735 () | 4389737..4390792 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| QR63_RS21740 () | 4390863..4391648 | - | 786 | WP_000207552.1 | Chemotaxis protein LafU | VF |
| QR63_RS21745 () | 4391620..4393332 | + | 1713 | Protein_4143 | Flagellar biosynthesis protein FlhA | VF |
| QR63_RS21750 () | 4393556..4394053 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| QR63_RS21755 () | 4394229..4394978 | - | 750 | WP_000056849.1 | Murein DD-endopeptidase MepH | VF |
| QR63_RS21760 () | 4395188..4395448 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | - |
| QR63_RS21765 () | 4395451..4395729 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | - |
| QR63_RS21770 () | 4395885..4396625 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| QR63_RS21775 () | 4396596..4397363 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| QR63_RS21780 () | 4397569..4398147 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|