MGE detailed information
MGE type: Prophage MGE length: 50196 bp
Accession: NZ_CP012869 Location: 4344655..4394850 Organism: Escherichia coli strain K-12 substr. MG1655_TMP32XR1 Replicon: chromosome
Accession: NZ_CP012869 Location: 4344655..4394850 Organism: Escherichia coli strain K-12 substr. MG1655_TMP32XR1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QR62_RS21440 () | 4339789..4340745 | + | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| QR62_RS21445 () | 4340742..4342940 | + | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| QR62_RS21450 () | 4342950..4343906 | + | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| QR62_RS21455 () | 4343957..4344295 | + | 339 | Protein_4083 | LysR family transcriptional regulator | - |
| QR62_RS21465 () | 4344580..4345980 | + | 1401 | WP_001407714.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| QR62_RS21470 () | 4346097..4346537 | + | 441 | WP_000224818.1 | hypothetical protein | - |
| QR62_RS21475 () | 4346534..4346758 | + | 225 | WP_001272156.1 | helix-turn-helix domain-containing protein | - |
| QR62_RS21480 () | 4346877..4347731 | + | 855 | WP_000072039.1 | hypothetical protein | - |
| QR62_RS21485 () | 4347758..4348456 | + | 699 | WP_001214248.1 | recombinase family protein | - |
| QR62_RS21490 () | 4348728..4349354 | + | 627 | WP_000860996.1 | inovirus Gp2 family protein | - |
| QR62_RS21495 () | 4349445..4350275 | - | 831 | Protein_4090 | type III restriction endonuclease subunit R | - |
| QR62_RS21500 () | 4350330..4351027 | + | 698 | Protein_4091 | IS1 family transposase IS1R | Transposase |
| QR62_RS24720 () | 4351044..4351247 | - | 204 | Protein_4092 | DUF3987 domain-containing protein | - |
| QR62_RS26210 () | 4351306..4351401 | + | 96 | WP_211180486.1 | putative translational regulatory protein ArgL | - |
| QR62_RS21505 () | 4351371..4352375 | + | 1005 | WP_001281825.1 | Ornithine carbamoyltransferase subunit F | VF |
| QR62_RS21510 () | 4352514..4353272 | + | 759 | WP_001121657.1 | DNA-binding transcriptional repressor XynR | - |
| QR62_RS21515 () | 4353277..4354887 | - | 1611 | WP_000406871.1 | glycoside hydrolase family 43 protein | - |
| QR62_RS21520 () | 4354899..4356281 | - | 1383 | WP_000192863.1 | MFS transporter | - |
| QR62_RS21525 () | 4356508..4358475 | - | 1968 | WP_000151261.1 | xylonate dehydratase YagF | - |
| QR62_RS21530 () | 4358490..4359398 | - | 909 | WP_001136613.1 | 2-keto-3-deoxygluconate aldolase | - |
| QR62_RS21535 () | 4359693..4360847 | + | 1155 | WP_010723086.1 | IS481 family transposase ISEc19 | Transposase |
| QR62_RS21540 () | 4360941..4361291 | + | 351 | WP_001030800.1 | type IV toxin-antitoxin system antitoxin YagB | - |
| QR62_RS21545 () | 4361314..4361562 | + | 249 | Protein_4102 | IS3 family transposase ISEhe3 | Transposase |
| QR62_RS24725 () | 4361572..4361745 | - | 174 | Protein_4103 | IS30 family transposase | - |
| QR62_RS21550 () | 4361801..4362498 | + | 698 | Protein_4104 | IS1 family transposase IS1R | Transposase |
| QR62_RS21555 () | 4362515..4362862 | + | 348 | Protein_4105 | ABC transporter permease subunit | - |
| QR62_RS21560 () | 4362874..4363920 | + | 1047 | WP_000192349.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| QR62_RS21565 () | 4364029..4364961 | - | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| QR62_RS21570 () | 4364948..4366351 | - | 1404 | WP_001393629.1 | S-methylmethionine permease | - |
| QR62_RS21575 () | 4366595..4367575 | + | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| QR62_RS21580 () | 4367723..4368814 | - | 1092 | Protein_4110 | group II intron reverse transcriptase/maturase | - |
| QR62_RS21595 () | 4369487..4369912 | - | 426 | Protein_4111 | IS3 family transposase | - |
| QR62_RS21600 () | 4369922..4371073 | - | 1152 | WP_001254938.1 | IS30 family transposase IS30D | Transposase |
| QR62_RS21605 () | 4371141..4371398 | - | 258 | Protein_4113 | IS3 family transposase ISEc52 | Transposase |
| QR62_RS21610 () | 4371494..4372387 | + | 894 | WP_000770246.1 | LysR family transcriptional regulator | - |
| QR62_RS21615 () | 4372716..4373579 | + | 864 | WP_001065553.1 | GTPase family protein | - |
| QR62_RS21620 () | 4373671..4374492 | + | 822 | WP_000197389.1 | DUF945 domain-containing protein | - |
| QR62_RS25830 () | 4374709..4374900 | + | 192 | Protein_4117 | DeoR family transcriptional regulator | - |
| QR62_RS25835 () | 4374896..4375123 | + | 228 | WP_001548158.1 | hypothetical protein | - |
| QR62_RS25840 () | 4375123..4375566 | + | 444 | WP_000824223.1 | hypothetical protein | - |
| QR62_RS21635 () | 4375589..4376056 | + | 468 | WP_001547765.1 | hypothetical protein | - |
| QR62_RS21640 () | 4376133..4376372 | + | 240 | WP_000194654.1 | DUF905 domain-containing protein | - |
| QR62_RS21645 () | 4376470..4376928 | + | 459 | WP_000211838.1 | antirestriction protein | - |
| QR62_RS21650 () | 4376944..4377420 | + | 477 | WP_000811693.1 | RadC family protein | - |
| QR62_RS24755 () | 4377429..4377650 | + | 222 | WP_000691994.1 | DUF987 domain-containing protein | - |
| QR62_RS21655 () | 4377669..4377986 | + | 318 | WP_000070395.1 | type IV toxin-antitoxin system antitoxin YafW | Antitoxin Detail |
| QR62_RS21660 () | 4378007..4378348 | + | 342 | WP_000854672.1 | type IV toxin-antitoxin system toxin YkfI | Toxin Detail |
| QR62_RS21670 () | 4378920..4380173 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| QR62_RS21675 () | 4380185..4381288 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| QR62_RS21680 () | 4381576..4382631 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| QR62_RS21685 () | 4382670..4383057 | - | 388 | Protein_4130 | sigma factor-binding protein Crl | - |
| QR62_RS21690 () | 4383057..4383754 | + | 698 | Protein_4131 | IS1 family transposase IS1A | Transposase |
| QR62_RS25845 () | 4383764..4383856 | - | 93 | Protein_4132 | Crl family RNA polymerase assembly factor | - |
| QR62_RS21695 () | 4383914..4385158 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| - () | 4384574..4384654 | - | 81 | NuclAT_12 | - | - |
| - () | 4384574..4384654 | - | 81 | NuclAT_12 | - | - |
| - () | 4384574..4384654 | - | 81 | NuclAT_12 | - | - |
| - () | 4384574..4384654 | - | 81 | NuclAT_12 | - | - |
| QR62_RS21700 () | 4385250..4385708 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| QR62_RS21705 () | 4385969..4387426 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| QR62_RS21710 () | 4387483..4388004 | - | 522 | Protein_4136 | peptide chain release factor H | - |
| QR62_RS21715 () | 4388000..4388206 | - | 207 | Protein_4137 | RtcB family protein | - |
| QR62_RS21720 () | 4388524..4388976 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| QR62_RS21725 () | 4388986..4389384 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| QR62_RS21730 () | 4389387..4389680 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| QR62_RS21735 () | 4389732..4390787 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| QR62_RS21740 () | 4390858..4391643 | - | 786 | WP_000207552.1 | Chemotaxis protein LafU | VF |
| QR62_RS21745 () | 4391615..4393327 | + | 1713 | Protein_4143 | Flagellar biosynthesis protein FlhA | VF |
| QR62_RS21750 () | 4393551..4394048 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| QR62_RS21755 () | 4394224..4394973 | - | 750 | WP_000056849.1 | Murein DD-endopeptidase MepH | VF |
| QR62_RS21760 () | 4395183..4395443 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | - |
| QR62_RS21765 () | 4395446..4395724 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | - |
| QR62_RS21770 () | 4395880..4396620 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| QR62_RS21775 () | 4396591..4397358 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| QR62_RS21780 () | 4397564..4398142 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|