MGE detailed information
MGE type: Prophage MGE length: 68867 bp
Accession: NZ_CP012735 Location: 3696012..3764878 Organism: Shigella flexneri 1a strain 0228 Replicon: chromosome
Accession: NZ_CP012735 Location: 3696012..3764878 Organism: Shigella flexneri 1a strain 0228 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOT98_RS20165 () | 3691843..3693384 | + | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
| AOT98_RS20170 () | 3693428..3693934 | - | 507 | WP_000084387.1 | thiol peroxidase | - |
| AOT98_RS20175 () | 3694053..3695018 | + | 966 | WP_005049759.1 | L-Ala-D/L-Glu epimerase | - |
| AOT98_RS20180 () | 3694993..3695721 | - | 729 | WP_005049761.1 | murein tripeptide amidase MpaA | - |
| AOT98_RS20185 () | 3696012..3696650 | - | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| AOT98_RS20190 () | 3696668..3697249 | - | 582 | Protein_3592 | alpha/beta hydrolase | - |
| AOT98_RS20195 () | 3697478..3698674 | + | 1197 | WP_005084161.1 | IS110-like element ISEc20 family transposase | - |
| AOT98_RS20200 () | 3698691..3699050 | - | 360 | Protein_3594 | alpha/beta hydrolase | - |
| AOT98_RS20205 () | 3699050..3699970 | - | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| AOT98_RS20210 () | 3700108..3700542 | + | 435 | Protein_3596 | DNA-binding transcriptional regulator PgrR | - |
| AOT98_RS28090 () | 3701847..3702257 | + | 411 | Protein_3598 | YdaU family protein | - |
| AOT98_RS30390 () | 3704023..3704192 | + | 170 | Protein_3600 | hypothetical protein | - |
| AOT98_RS20240 () | 3704338..3705084 | + | 747 | WP_000788996.1 | ATP-binding protein | - |
| AOT98_RS20245 () | 3705099..3705521 | + | 423 | WP_001118168.1 | DUF977 family protein | - |
| AOT98_RS20250 () | 3705579..3705935 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| AOT98_RS20255 () | 3706028..3706246 | + | 219 | WP_000256998.1 | DUF4014 family protein | - |
| AOT98_RS20260 () | 3706248..3706613 | + | 366 | WP_001229297.1 | HNH endonuclease signature motif containing protein | - |
| AOT98_RS20265 () | 3706610..3707275 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| AOT98_RS20270 () | 3707275..3707640 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 3708025..3708083 | - | 59 | - | - | Antitoxin Detail |
| AOT98_RS20280 () | 3708095..3708250 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| AOT98_RS20295 () | 3709587..3710186 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| AOT98_RS20300 () | 3710186..3710476 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| AOT98_RS20305 () | 3710473..3711027 | + | 555 | Protein_3612 | DUF1133 family protein | - |
| AOT98_RS20310 () | 3711180..3711353 | + | 174 | WP_000504450.1 | hypothetical protein | - |
| AOT98_RS20315 () | 3711415..3712554 | + | 1140 | WP_000088354.1 | IS3 family transposase | - |
| AOT98_RS20320 () | 3712547..3713107 | + | 561 | WP_072075205.1 | ORF6N domain-containing protein | - |
| AOT98_RS20345 () | 3713741..3715345 | + | 1605 | WP_000615491.1 | site-specific integrase | - |
| AOT98_RS20355 () | 3716167..3717335 | + | 1169 | WP_000747032.1 | IS3-like element IS911 family transposase | - |
| AOT98_RS20360 () | 3717346..3717981 | + | 636 | Protein_3618 | IS3-like element IS911 family transposase | - |
| AOT98_RS20365 () | 3718359..3718511 | + | 153 | Protein_3619 | Rha family transcriptional regulator | - |
| AOT98_RS20375 () | 3718570..3719267 | + | 698 | WP_225620329.1 | IS1 family transposase | - |
| AOT98_RS20380 () | 3719283..3720188 | + | 906 | Protein_3621 | IS3-like element IS600 family transposase | - |
| AOT98_RS20385 () | 3720216..3720584 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| AOT98_RS20390 () | 3720608..3721152 | + | 545 | Protein_3623 | tail fiber assembly protein | - |
| AOT98_RS20395 () | 3721176..3722444 | + | 1269 | WP_005098694.1 | prophage tail fiber N-terminal domain-containing protein | - |
| AOT98_RS20400 () | 3722395..3723018 | + | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| AOT98_RS20405 () | 3723219..3724076 | - | 858 | WP_000968134.1 | iron/manganese ABC transporter permease subunit SitD | - |
| AOT98_RS20410 () | 3724073..3724930 | - | 858 | WP_001101728.1 | iron/manganese ABC transporter permease subunit SitC | - |
| AOT98_RS20415 () | 3724927..3725754 | - | 828 | WP_000983722.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
| AOT98_RS20420 () | 3725754..3726668 | - | 915 | WP_000555620.1 | iron/manganese ABC transporter substrate-binding protein SitA | - |
| AOT98_RS28110 () | 3727100..3727741 | - | 642 | Protein_3630 | site-specific integrase | - |
| AOT98_RS20430 () | 3727795..3728492 | + | 698 | WP_225620329.1 | IS1 family transposase | - |
| AOT98_RS28115 () | 3728509..3728679 | - | 171 | Protein_3632 | DUF3596 domain-containing protein | - |
| AOT98_RS20435 () | 3728681..3728848 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| AOT98_RS20440 () | 3728896..3729375 | - | 480 | Protein_3634 | IS3 family transposase | - |
| AOT98_RS20445 () | 3729459..3730967 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| AOT98_RS28130 () | 3731640..3732375 | - | 736 | Protein_3636 | IS3-like element IS629 family transposase | - |
| AOT98_RS20460 () | 3732450..3733547 | - | 1098 | WP_001173294.1 | AAA family ATPase | - |
| AOT98_RS20465 () | 3733553..3733813 | - | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| AOT98_RS20470 () | 3733912..3735068 | + | 1157 | Protein_3639 | IS3-like element IS600 family transposase | - |
| AOT98_RS20475 () | 3735125..3736540 | - | 1416 | Protein_3640 | exodeoxyribonuclease VIII | - |
| AOT98_RS20480 () | 3736640..3736915 | - | 276 | WP_005049830.1 | hypothetical protein | - |
| AOT98_RS20485 () | 3736990..3737160 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| AOT98_RS20490 () | 3737160..3737381 | - | 222 | WP_000560210.1 | cell division protein FtsZ | - |
| AOT98_RS20505 () | 3738728..3739616 | - | 889 | Protein_3645 | Rha family transcriptional regulator | - |
| AOT98_RS29800 () | 3740840..3741220 | + | 381 | Protein_3646 | IS66-like element accessory protein TnpA | - |
| AOT98_RS29805 () | 3741222..3741389 | + | 168 | Protein_3647 | phage tail protein | - |
| AOT98_RS20520 () | 3741340..3741963 | + | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| AOT98_RS20530 () | 3742143..3743858 | - | 1716 | WP_128568580.1 | T3SS effector E3 ubiquitin-protein ligase IpaH3 | - |
| AOT98_RS20535 () | 3744400..3745097 | + | 698 | WP_225620329.1 | IS1 family transposase | - |
| AOT98_RS20540 () | 3745377..3745823 | + | 447 | Protein_3651 | metallophosphoesterase | - |
| AOT98_RS20550 () | 3745888..3747044 | + | 1157 | WP_094085510.1 | IS3-like element IS600 family transposase | - |
| AOT98_RS20555 () | 3747088..3747276 | + | 189 | Protein_3653 | serine/threonine-protein phosphatase | - |
| AOT98_RS20560 () | 3747301..3747492 | - | 192 | WP_005049838.1 | YebW family protein | - |
| AOT98_RS20565 () | 3747597..3747833 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AOT98_RS20570 () | 3747951..3749390 | - | 1440 | Protein_3656 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AOT98_RS20575 () | 3749470..3752090 | - | 2621 | Protein_3657 | lipid-binding membrane homeostasis protein YebT | - |
| AOT98_RS20580 () | 3752059..3753342 | - | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| AOT98_RS20585 () | 3753472..3753969 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| AOT98_RS20590 () | 3754066..3754764 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| AOT98_RS20595 () | 3754784..3756832 | + | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| AOT98_RS20600 () | 3757024..3757905 | + | 882 | WP_000984517.1 | protease HtpX | - |
| AOT98_RS20605 () | 3757951..3759324 | - | 1374 | WP_001127218.1 | MFS transporter | - |
| AOT98_RS20610 () | 3759501..3760292 | + | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| AOT98_RS20615 () | 3760435..3760674 | - | 240 | WP_001211010.1 | YobH family protein | - |
| AOT98_RS20620 () | 3760833..3760976 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| AOT98_RS20625 () | 3761051..3761338 | + | 288 | WP_001006860.1 | YebO family protein | - |
| AOT98_RS20635 () | 3762009..3762152 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| AOT98_RS20640 () | 3762165..3762374 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| AOT98_RS20645 () | 3762540..3763349 | + | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| AOT98_RS20650 () | 3763346..3763912 | - | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| AOT98_RS20660 () | 3765101..3765577 | - | 477 | WP_000156246.1 | DUF986 family protein | - |
| AOT98_RS20665 () | 3765632..3766483 | - | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| AOT98_RS20670 () | 3766496..3767296 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| AOT98_RS20675 () | 3767359..3768330 | - | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
| AOT98_RS30670 () | 3768647..3768805 | + | 159 | WP_001327808.1 | protein YoaL | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|