MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 63412 bp
Accession: NZ_CP012734 Location: 1..63412 Organism: Shigella flexneri 1a strain 0228 Replicon: plasmid unnamed
Accession: NZ_CP012734 Location: 1..63412 Organism: Shigella flexneri 1a strain 0228 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOT98_RS00495 (AOT98_25240) | 82..627 | + | 546 | WP_000757693.1 | DNA distortion polypeptide 1 | - |
| AOT98_RS00500 (AOT98_25245) | 630..1797 | + | 1168 | Protein_1 | relaxase/mobilization nuclease domain-containing protein | - |
| AOT98_RS26115 | 2150..2668 | + | 519 | WP_024127747.1 | transcription termination/antitermination NusG family protein | - |
| AOT98_RS00505 (AOT98_25250) | 2598..2810 | + | 213 | WP_000125172.1 | hypothetical protein | - |
| AOT98_RS00510 (AOT98_25255) | 2843..3490 | + | 648 | WP_000953529.1 | Type IV secretion system protein virB1 | VF |
| AOT98_RS00515 (AOT98_25260) | 3468..3764 | + | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| AOT98_RS30005 | 3783..4019 | + | 237 | Protein_6 | Type IV secretion system protein virB4 | VF |
| AOT98_RS00520 (AOT98_25265) | 4542..6536 | + | 1995 | WP_072107035.1 | Type IV secretion system protein virB4 | VF |
| AOT98_RS00525 (AOT98_25270) | 6547..7305 | + | 759 | WP_000744200.1 | type IV secretion system protein | - |
| AOT98_RS00530 (AOT98_25275) | 7306..7593 | + | 288 | WP_000835347.1 | EexN family lipoprotein | - |
| AOT98_RS00535 (AOT98_25280) | 7602..8732 | + | 1131 | WP_024127751.1 | type IV secretion system protein | - |
| AOT98_RS30010 | 8860..8988 | + | 129 | WP_001328099.1 | hypothetical protein | - |
| AOT98_RS00540 (AOT98_25285) | 8978..9691 | + | 714 | WP_000394613.1 | type IV secretion system protein | - |
| AOT98_RS00545 (AOT98_25290) | 9696..10625 | + | 930 | WP_024127752.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| AOT98_RS00550 (AOT98_25295) | 10622..11827 | + | 1206 | WP_052921380.1 | Type IV secretion system protein virB10 | VF |
| AOT98_RS00555 (AOT98_25300) | 11829..12860 | + | 1032 | WP_052921381.1 | Type IV secretion system protein VirB11 | VF |
| AOT98_RS00560 (AOT98_25305) | 12863..14698 | + | 1836 | WP_024127754.1 | type IV secretory system conjugative DNA transfer family protein | - |
| AOT98_RS00565 (AOT98_25310) | 14695..15108 | + | 414 | WP_024127755.1 | cag pathogenicity island Cag12 family protein | - |
| AOT98_RS00570 (AOT98_25315) | 15105..15407 | + | 303 | WP_000717627.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| AOT98_RS00575 (AOT98_25320) | 15494..17647 | + | 2154 | WP_024127756.1 | type IA DNA topoisomerase | - |
| AOT98_RS00580 (AOT98_25325) | 17644..17850 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| AOT98_RS00585 (AOT98_25330) | 17866..18312 | + | 447 | WP_024127757.1 | H-NS family nucleoid-associated regulatory protein | - |
| AOT98_RS00590 (AOT98_25335) | 18395..20170 | + | 1776 | WP_237158166.1 | NACHT domain-containing protein | - |
| AOT98_RS00595 (AOT98_25340) | 20630..21757 | - | 1128 | WP_024127759.1 | hypothetical protein | - |
| AOT98_RS30685 | 22573..22674 | + | 102 | WP_271232226.1 | DinQ-like type I toxin DqlB | - |
| AOT98_RS00610 (AOT98_25355) | 23321..24549 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| AOT98_RS28850 | 24474..25016 | - | 543 | WP_068863055.1 | hypothetical protein | - |
| AOT98_RS00615 (AOT98_25360) | 25013..25213 | - | 201 | WP_052921392.1 | hypothetical protein | - |
| AOT98_RS00620 (AOT98_25365) | 25603..26148 | + | 546 | WP_001493763.1 | plasmid pRiA4b ORF-3 family protein | - |
| AOT98_RS00625 (AOT98_25370) | 26285..26857 | + | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| AOT98_RS00630 (AOT98_25375) | 26894..28285 | + | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| AOT98_RS00635 (AOT98_25380) | 28318..28746 | + | 429 | Protein_31 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| AOT98_RS00640 (AOT98_25385) | 29065..29721 | - | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| AOT98_RS00655 (AOT98_25400) | 30116..31131 | + | 1016 | Protein_33 | IS3 family transposase ISEc36 | Transposase |
| AOT98_RS00660 (AOT98_25405) | 31174..34179 | - | 3006 | WP_001143760.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| AOT98_RS00665 (AOT98_25410) | 34343..34900 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| AOT98_RS00670 (AOT98_25415) | 35083..35943 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| AOT98_RS00675 (AOT98_25420) | 36095..36433 | + | 339 | WP_052921317.1 | hypothetical protein | - |
| AOT98_RS00680 (AOT98_25425) | 36812..37786 | + | 975 | WP_068863057.1 | Abi family protein | - |
| AOT98_RS00685 (AOT98_25430) | 37875..38666 | - | 792 | WP_052921319.1 | hypothetical protein | - |
| AOT98_RS00690 (AOT98_25435) | 38863..39507 | - | 645 | WP_024127744.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| AOT98_RS00695 (AOT98_25440) | 39888..40550 | + | 663 | WP_000516402.1 | division plane positioning ATPase MipZ | - |
| AOT98_RS00700 (AOT98_25445) | 40648..40929 | + | 282 | WP_001185482.1 | hypothetical protein | - |
| AOT98_RS00705 (AOT98_25450) | 40954..41931 | + | 978 | WP_024127745.1 | hypothetical protein | - |
| AOT98_RS00710 (AOT98_25455) | 41928..42284 | - | 357 | WP_052921318.1 | DNA distortion polypeptide 3 | - |
| AOT98_RS00715 (AOT98_25460) | 42421..42867 | - | 447 | WP_001074386.1 | hypothetical protein | - |
| AOT98_RS00720 (AOT98_25465) | 42892..43746 | - | 855 | WP_001239324.1 | replication initiation protein | - |
| AOT98_RS00725 (AOT98_25470) | 44808..45059 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| AOT98_RS00730 (AOT98_25475) | 45049..45330 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| AOT98_RS00735 (AOT98_25480) | 45476..45799 | + | 324 | WP_001181903.1 | hypothetical protein | - |
| AOT98_RS00740 (AOT98_25485) | 45844..46089 | + | 246 | WP_001550454.1 | hypothetical protein | - |
| AOT98_RS00745 (AOT98_25490) | 46079..46294 | + | 216 | WP_052921379.1 | hypothetical protein | - |
| AOT98_RS00750 (AOT98_25495) | 46387..46716 | + | 330 | WP_000866648.1 | hypothetical protein | - |
| AOT98_RS00755 (AOT98_25500) | 46759..46938 | + | 180 | WP_000439078.1 | hypothetical protein | - |
| AOT98_RS29575 | 47008..47157 | + | 150 | WP_000003880.1 | hypothetical protein | - |
| AOT98_RS26130 | 47170..47442 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| AOT98_RS00765 (AOT98_25510) | 47768..48313 | + | 546 | WP_000757693.1 | DNA distortion polypeptide 1 | - |
| AOT98_RS00770 (AOT98_25515) | 48316..49482 | + | 1167 | WP_000539529.1 | hypothetical protein | Relaxase |
| AOT98_RS26135 | 49835..50353 | + | 519 | WP_024127747.1 | transcription termination/antitermination NusG family protein | - |
| AOT98_RS00775 (AOT98_25520) | 50283..50495 | + | 213 | WP_000125172.1 | hypothetical protein | - |
| AOT98_RS00780 (AOT98_25525) | 50528..51175 | + | 648 | WP_000953529.1 | Type IV secretion system protein virB1 | VF |
| AOT98_RS00785 (AOT98_25530) | 51153..51449 | + | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| AOT98_RS30015 | 51468..51704 | + | 237 | Protein_62 | Type IV secretion system protein virB4 | VF |
| AOT98_RS00790 (AOT98_25535) | 52227..54221 | + | 1995 | WP_072107035.1 | Type IV secretion system protein virB4 | VF |
| AOT98_RS00795 (AOT98_25540) | 54232..54990 | + | 759 | WP_000744200.1 | type IV secretion system protein | - |
| AOT98_RS00800 (AOT98_25545) | 54991..55278 | + | 288 | WP_000835347.1 | EexN family lipoprotein | - |
| AOT98_RS00805 (AOT98_25550) | 55287..56417 | + | 1131 | WP_024127751.1 | type IV secretion system protein | - |
| AOT98_RS30020 | 56545..56673 | + | 129 | WP_001328099.1 | hypothetical protein | - |
| AOT98_RS00810 (AOT98_25555) | 56663..57376 | + | 714 | WP_000394613.1 | type IV secretion system protein | - |
| AOT98_RS00815 (AOT98_25560) | 57381..58310 | + | 930 | WP_024127752.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| AOT98_RS00820 (AOT98_25565) | 58307..59512 | + | 1206 | WP_052921380.1 | Type IV secretion system protein virB10 | VF |
| AOT98_RS00825 (AOT98_25570) | 59514..60545 | + | 1032 | WP_052921381.1 | Type IV secretion system protein VirB11 | VF |
| AOT98_RS30590 | 60892..61419 | + | 528 | WP_257721754.1 | type IV secretory system conjugative DNA transfer family protein | - |
| AOT98_RS30595 | 61403..62101 | + | 699 | WP_257721755.1 | type IV secretory system conjugative DNA transfer family protein | - |
| AOT98_RS28855 (AOT98_25580) | 62336..62783 | + | 448 | Protein_74 | cag pathogenicity island Cag12 family protein | - |
| AOT98_RS00840 (AOT98_25585) | 62780..63085 | + | 306 | WP_061440240.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| AOT98_RS26145 | 63168..63394 | + | 227 | Protein_76 | DNA topoisomerase III | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|