MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 134012 bp
Accession: NZ_CP012700 Location: 4178073..4312084 Organism: Sphingopyxis macrogoltabida strain EY-1 Replicon: chromosome
Accession: NZ_CP012700 Location: 4178073..4312084 Organism: Sphingopyxis macrogoltabida strain EY-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AN936_RS19355 () | 4173726..4174463 | - | 738 | WP_054589519.1 | flagellar basal body rod protein FlgF | - |
| AN936_RS19360 () | 4174499..4175326 | - | 828 | WP_054589520.1 | flagellar hook-basal body complex protein | - |
| AN936_RS19365 () | 4175337..4175657 | - | 321 | WP_054589521.1 | flagellar hook capping protein | - |
| AN936_RS19370 () | 4175659..4176066 | - | 408 | WP_054589522.1 | flagellar basal body rod protein FlgC | - |
| AN936_RS19375 () | 4176063..4176413 | - | 351 | WP_054589523.1 | flagellar basal body rod protein FlgB | - |
| AN936_RS19380 () | 4176695..4177213 | + | 519 | WP_054589524.1 | flagella basal body P-ring formation protein FlgA | - |
| AN936_RS19385 () | 4177573..4177875 | + | 303 | WP_054589525.1 | flagellar biosynthesis anti-sigma factor FlgM | - |
| AN936_RS19390 () | 4177875..4178180 | + | 306 | WP_054589526.1 | hypothetical protein | - |
| AN936_RS19395 () | 4178260..4179081 | + | 822 | WP_054589527.1 | transglycosylase SLT domain-containing protein | - |
| AN936_RS19400 () | 4179078..4181201 | + | 2124 | WP_054589528.1 | Flagellar biosynthesis protein FlhA | VF |
| AN936_RS19405 () | 4181191..4181961 | + | 771 | WP_054589529.1 | RNA polymerase sigma factor for flagellar operon | VF |
| AN936_RS19410 () | 4181998..4182495 | - | 498 | WP_054589530.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| AN936_RS19415 () | 4182526..4182939 | - | 414 | WP_054590432.1 | hypothetical protein | - |
| AN936_RS19420 () | 4182969..4183346 | - | 378 | WP_054589531.1 | hypothetical protein | - |
| AN936_RS19425 () | 4183407..4183898 | - | 492 | WP_054589532.1 | hypothetical protein | VF |
| AN936_RS19430 () | 4184024..4184770 | - | 747 | WP_054589533.1 | FadR family transcriptional regulator | - |
| AN936_RS19435 () | 4184804..4185730 | - | 927 | WP_054590433.1 | DUF4861 family protein | - |
| AN936_RS19440 () | 4185730..4186941 | - | 1212 | WP_054589534.1 | D-galactonate dehydratase family protein | - |
| AN936_RS19445 () | 4187059..4188213 | + | 1155 | WP_054589535.1 | glycoside hydrolase family 88 protein | - |
| AN936_RS19450 () | 4188418..4191282 | + | 2865 | WP_054589536.1 | TonB-dependent receptor | - |
| AN936_RS19455 () | 4191176..4192474 | + | 1299 | WP_084758545.1 | alginate lyase family protein | - |
| AN936_RS19460 () | 4192484..4193104 | - | 621 | WP_054589538.1 | PilZ domain-containing protein | - |
| AN936_RS19465 () | 4193291..4194457 | + | 1167 | WP_084758546.1 | Alcohol dehydrogenase 2 | VF |
| AN936_RS19470 () | 4194765..4200419 | - | 5655 | WP_054589539.1 | autotransporter domain-containing protein | - |
| AN936_RS19475 () | 4200720..4202969 | + | 2250 | WP_149037728.1 | sensor histidine kinase | - |
| AN936_RS19480 () | 4202955..4203572 | - | 618 | WP_054589541.1 | response regulator transcription factor | - |
| AN936_RS19485 () | 4203702..4204343 | - | 642 | WP_054589542.1 | FABP family protein | - |
| AN936_RS19490 () | 4204467..4206149 | + | 1683 | WP_054590435.1 | D-aminoacylase | - |
| AN936_RS19495 () | 4206254..4208215 | + | 1962 | WP_173585676.1 | CocE/NonD family hydrolase | - |
| AN936_RS19500 () | 4208230..4210692 | + | 2463 | WP_054589543.1 | CehA/McbA family metallohydrolase | - |
| AN936_RS19505 () | 4211029..4211355 | + | 327 | WP_054589544.1 | hypothetical protein | - |
| AN936_RS19510 () | 4211398..4212642 | + | 1245 | WP_158500120.1 | radical SAM protein | - |
| AN936_RS19515 () | 4212639..4213829 | + | 1191 | WP_054589546.1 | hypothetical protein | - |
| AN936_RS19520 () | 4213832..4215001 | + | 1170 | WP_054589547.1 | sulfotransferase | - |
| AN936_RS19525 () | 4215044..4216339 | - | 1296 | WP_201782940.1 | DUF2236 domain-containing protein | - |
| AN936_RS19530 () | 4216476..4217162 | + | 687 | WP_054589549.1 | CerR family C-terminal domain-containing protein | - |
| AN936_RS19535 () | 4217159..4217623 | - | 465 | WP_054589550.1 | hypothetical protein | - |
| AN936_RS19540 () | 4217613..4219280 | + | 1668 | WP_054589551.1 | TonB-dependent receptor | - |
| AN936_RS19545 () | 4219423..4220331 | + | 909 | WP_054586746.1 | IS91 family transposase ISMno24 | Transposase |
| AN936_RS19550 () | 4220337..4221527 | + | 1191 | WP_054586745.1 | IS91 family transposase ISMno24 | Transposase |
| AN936_RS19555 () | 4221865..4223184 | - | 1320 | WP_054589552.1 | oxygen-independent coproporphyrinogen III oxidase | - |
| AN936_RS19560 () | 4223474..4223629 | - | 156 | WP_054589553.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| AN936_RS19565 () | 4223626..4225737 | - | 2112 | WP_054589554.1 | cadmium-translocating P-type ATPase | - |
| AN936_RS19570 () | 4225734..4226204 | - | 471 | WP_054589555.1 | FixH family protein | - |
| AN936_RS19575 () | 4226201..4227658 | - | 1458 | WP_054589556.1 | cytochrome c oxidase accessory protein CcoG | - |
| AN936_RS19580 () | 4227645..4228571 | - | 927 | WP_054589557.1 | cytochrome-c oxidase, cbb3-type subunit III | - |
| AN936_RS19585 () | 4228564..4228722 | - | 159 | WP_054589558.1 | cbb3-type cytochrome c oxidase subunit 3 | - |
| AN936_RS19590 () | 4228719..4229501 | - | 783 | WP_054589559.1 | cytochrome-c oxidase, cbb3-type subunit II | - |
| AN936_RS19595 () | 4229513..4231171 | - | 1659 | WP_054589560.1 | cytochrome-c oxidase, cbb3-type subunit I | - |
| AN936_RS19600 () | 4231368..4231688 | + | 321 | Protein_3943 | IS21 family transposase ISSsp4 | Transposase |
| AN936_RS19605 () | 4231944..4232699 | + | 756 | WP_054589561.1 | arsenical resistance protein ArsH | - |
| AN936_RS19610 () | 4232713..4233735 | - | 1023 | WP_201782941.1 | alpha/beta hydrolase | - |
| AN936_RS19615 () | 4234398..4235744 | + | 1347 | WP_035747534.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| AN936_RS19620 () | 4235815..4236849 | - | 1035 | WP_054589563.1 | patatin-like phospholipase family protein | - |
| AN936_RS24295 () | 4236846..4237295 | - | 450 | WP_201783003.1 | hypothetical protein | - |
| AN936_RS19625 () | 4237298..4238530 | - | 1233 | WP_201783004.1 | nucleotidyltransferase | - |
| AN936_RS19630 () | 4238733..4239053 | + | 321 | WP_054589564.1 | helix-turn-helix domain-containing protein | - |
| AN936_RS19635 () | 4239104..4239973 | + | 870 | WP_201783005.1 | ImmA/IrrE family metallo-endopeptidase | - |
| AN936_RS19640 () | 4239985..4240473 | - | 489 | WP_201782942.1 | hypothetical protein | - |
| AN936_RS19645 () | 4240555..4240857 | - | 303 | WP_054589566.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| AN936_RS25335 () | 4240854..4241009 | - | 156 | WP_201783006.1 | stability determinant | Antitoxin Detail |
| AN936_RS19655 () | 4241494..4242177 | + | 684 | WP_054589567.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| AN936_RS25150 () | 4242201..4242314 | - | 114 | WP_158500121.1 | antitoxin VbhA family protein | - |
| AN936_RS24820 () | 4242589..4242678 | - | 90 | Protein_3957 | DUF454 domain-containing protein | - |
| AN936_RS19665 () | 4242843..4243745 | - | 903 | WP_054589569.1 | SDR family oxidoreductase | - |
| AN936_RS19670 () | 4244224..4245579 | - | 1356 | WP_084758549.1 | IS1380 family transposase IS1247 | Transposase |
| AN936_RS24300 () | 4245634..4246026 | - | 393 | WP_149037730.1 | hypothetical protein | - |
| AN936_RS19675 () | 4246038..4247054 | - | 1017 | WP_054589571.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| AN936_RS24305 () | 4247047..4247640 | - | 594 | WP_084758550.1 | hypothetical protein | - |
| AN936_RS19680 () | 4247877..4248845 | + | 969 | WP_054589572.1 | DUF1738 domain-containing protein | - |
| AN936_RS19685 () | 4248842..4249237 | + | 396 | WP_054589573.1 | DUF2958 domain-containing protein | - |
| AN936_RS19690 () | 4249362..4251500 | + | 2139 | WP_054589574.1 | ParB/RepB/Spo0J family partition protein | - |
| AN936_RS19695 () | 4251597..4251902 | + | 306 | WP_054589575.1 | hypothetical protein | - |
| AN936_RS25265 () | 4252324..4252488 | + | 165 | WP_010335706.1 | hypothetical protein | - |
| AN936_RS19705 () | 4252686..4253234 | + | 549 | WP_054589577.1 | hypothetical protein | - |
| AN936_RS19710 () | 4253300..4253716 | + | 417 | WP_054589578.1 | hypothetical protein | - |
| AN936_RS19715 () | 4253709..4254353 | + | 645 | WP_054589579.1 | hypothetical protein | - |
| AN936_RS19720 () | 4254512..4256737 | + | 2226 | Protein_3971 | strawberry notch family protein | - |
| AN936_RS19725 () | 4256891..4258123 | + | 1233 | WP_015449381.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| AN936_RS19730 () | 4258120..4259475 | + | 1356 | WP_009823940.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| AN936_RS19735 () | 4259472..4260476 | + | 1005 | WP_009823939.1 | Tyrosine recombinase XerC | VF |
| AN936_RS19740 () | 4260801..4262666 | + | 1866 | WP_201783007.1 | strawberry notch C-terminal domain-containing protein | - |
| AN936_RS19745 () | 4262666..4263703 | + | 1038 | WP_054589580.1 | toprim domain-containing protein | - |
| AN936_RS19750 () | 4264011..4264937 | + | 927 | WP_054589581.1 | DUF2493 domain-containing protein | - |
| AN936_RS19755 () | 4265088..4265528 | + | 441 | WP_054590439.1 | hypothetical protein | - |
| AN936_RS19760 () | 4265785..4266438 | - | 654 | WP_201782943.1 | DUF4145 domain-containing protein | - |
| AN936_RS19765 () | 4267236..4267562 | + | 327 | WP_054589582.1 | DUF736 domain-containing protein | - |
| AN936_RS19770 () | 4267658..4268899 | - | 1242 | WP_054589583.1 | Serine/threonine-protein kinase toxin HipA | VF |
| AN936_RS19775 () | 4268877..4269197 | - | 321 | WP_054589584.1 | helix-turn-helix domain-containing protein | - |
| AN936_RS19780 () | 4269519..4269770 | + | 252 | WP_054589585.1 | helix-turn-helix transcriptional regulator | - |
| AN936_RS19785 () | 4269849..4270121 | + | 273 | WP_054590441.1 | DUF2285 domain-containing protein | - |
| AN936_RS24315 () | 4270511..4271014 | + | 504 | WP_084758553.1 | DUF2285 domain-containing protein | - |
| AN936_RS24320 () | 4271151..4271432 | + | 282 | WP_084758662.1 | helix-turn-helix domain-containing protein | - |
| AN936_RS19790 () | 4271440..4272585 | + | 1146 | WP_054589586.1 | replication initiator protein A | - |
| AN936_RS19795 () | 4272582..4273235 | + | 654 | WP_054589587.1 | Sporulation initiation inhibitor protein Soj | VF |
| AN936_RS19800 () | 4273232..4273486 | + | 255 | WP_054589588.1 | hypothetical protein | - |
| AN936_RS19805 () | 4273483..4274001 | + | 519 | WP_054589589.1 | DUF2840 domain-containing protein | - |
| AN936_RS19810 () | 4273998..4274543 | + | 546 | WP_054589590.1 | S26 family signal peptidase | - |
| AN936_RS19815 () | 4274579..4274914 | + | 336 | WP_013368398.1 | DUF736 domain-containing protein | - |
| AN936_RS19820 () | 4274919..4275626 | + | 708 | WP_054589591.1 | lytic transglycosylase domain-containing protein | - |
| AN936_RS19825 () | 4275940..4278012 | + | 2073 | WP_054589592.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| AN936_RS19830 () | 4278188..4279579 | + | 1392 | Protein_3995 | Conjugal transfer protein TraG | VF |
| AN936_RS19835 () | 4279957..4280739 | + | 783 | WP_054589593.1 | P-type conjugative transfer protein TrbJ | - |
| AN936_RS19840 () | 4280760..4281047 | + | 288 | WP_054589594.1 | putative entry exclusion protein TrbK-alt | - |
| AN936_RS19845 () | 4281051..4282418 | + | 1368 | WP_054589595.1 | P-type conjugative transfer protein TrbL | - |
| AN936_RS19850 () | 4282415..4283104 | + | 690 | WP_054589596.1 | conjugal transfer protein TrbF | - |
| AN936_RS19855 () | 4283101..4284087 | + | 987 | WP_054589597.1 | P-type conjugative transfer protein TrbG | - |
| AN936_RS19860 () | 4284117..4285217 | + | 1101 | WP_054589598.1 | Type IV secretion system protein virB10 | VF |
| AN936_RS19865 () | 4285220..4285441 | + | 222 | WP_054589599.1 | DUF2274 domain-containing protein | - |
| AN936_RS19870 () | 4285436..4285837 | - | 402 | WP_149037733.1 | WHG domain-containing protein | - |
| AN936_RS19875 () | 4285836..4287191 | + | 1356 | WP_011997539.1 | IS1380 family transposase ISPme1 | Transposase |
| AN936_RS19890 () | 4289315..4290121 | - | 807 | Protein_4006 | AAA family ATPase | - |
| AN936_RS25340 () | 4290135..4290773 | - | 639 | WP_054590442.1 | hypothetical protein | - |
| AN936_RS19900 () | 4291624..4292838 | + | 1215 | WP_006954973.1 | IS256 family transposase ISSpma2 | Transposase |
| AN936_RS19905 () | 4292864..4294345 | - | 1482 | WP_084758554.1 | DUF1156 domain-containing protein | - |
| AN936_RS24835 () | 4294342..4294782 | - | 441 | WP_149037736.1 | hypothetical protein | - |
| AN936_RS19910 () | 4294766..4298986 | - | 4221 | WP_054589604.1 | ATPase | - |
| AN936_RS19915 () | 4298983..4299474 | - | 492 | WP_054589605.1 | hypothetical protein | - |
| AN936_RS19920 () | 4299483..4302986 | - | 3504 | WP_054589606.1 | DUF3883 domain-containing protein | - |
| AN936_RS19925 () | 4303006..4303890 | - | 885 | WP_054589607.1 | hypothetical protein | - |
| AN936_RS19930 () | 4304094..4306748 | + | 2655 | WP_054589608.1 | PD-(D/E)XK nuclease family protein | - |
| AN936_RS19935 () | 4306748..4310137 | + | 3390 | WP_054590443.1 | UvrD-helicase domain-containing protein | - |
| AN936_RS19940 () | 4310210..4311136 | + | 927 | WP_201782944.1 | SIR2 family protein | - |
| AN936_RS19945 () | 4311269..4312483 | + | 1215 | WP_006954973.1 | IS256-like element ISSpma2 family transposase | - |
| AN936_RS19950 () | 4312519..4312863 | + | 345 | WP_201782945.1 | hypothetical protein | - |
| AN936_RS19955 () | 4312860..4314488 | + | 1629 | WP_201782946.1 | DUF87 domain-containing protein | - |
| AN936_RS19960 () | 4314415..4315638 | - | 1224 | WP_054589611.1 | IS256 family transposase | - |
| AN936_RS24330 () | 4316099..4316311 | + | 213 | WP_084758556.1 | KTSC domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|