MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 46086 bp
Accession: NZ_CP012700 Location: 1468780..1514865 Organism: Sphingopyxis macrogoltabida strain EY-1 Replicon: chromosome
Accession: NZ_CP012700 Location: 1468780..1514865 Organism: Sphingopyxis macrogoltabida strain EY-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AN936_RS06875 () | 1464563..1466017 | + | 1455 | WP_054587486.1 | coniferyl aldehyde dehydrogenase | - |
| AN936_RS06880 () | 1466019..1467122 | - | 1104 | WP_054587487.1 | AI-2E family transporter | - |
| AN936_RS06885 () | 1467389..1468675 | + | 1287 | WP_054587488.1 | site-specific integrase | - |
| AN936_RS06895 () | 1469180..1472038 | + | 2859 | WP_054587489.1 | DEAD/DEAH box helicase family protein | - |
| AN936_RS24635 () | 1472035..1472220 | + | 186 | WP_149037613.1 | hypothetical protein | - |
| AN936_RS06900 () | 1472217..1474535 | + | 2319 | WP_054587490.1 | ATP-binding protein | - |
| AN936_RS06905 () | 1474540..1476333 | + | 1794 | WP_054587491.1 | AIPR family protein | - |
| AN936_RS06910 () | 1476330..1477976 | + | 1647 | WP_054587492.1 | site-specific DNA-methyltransferase | - |
| AN936_RS06915 () | 1477973..1480666 | + | 2694 | WP_054587493.1 | DEAD/DEAH box helicase family protein | - |
| AN936_RS06920 () | 1480779..1482032 | - | 1254 | WP_054587494.1 | three-Cys-motif partner protein TcmP | - |
| AN936_RS06925 () | 1482074..1482856 | - | 783 | WP_054587495.1 | DUF5131 family protein | - |
| AN936_RS25030 () | 1483605..1483793 | + | 189 | WP_158500060.1 | hypothetical protein | - |
| AN936_RS25035 () | 1483790..1484182 | + | 393 | WP_158500061.1 | DUF3768 domain-containing protein | - |
| AN936_RS06935 () | 1484197..1484388 | + | 192 | WP_054587497.1 | hypothetical protein | - |
| AN936_RS06940 () | 1484424..1486268 | + | 1845 | WP_054587498.1 | ParB/RepB/Spo0J family partition protein | - |
| AN936_RS24640 () | 1486476..1486691 | + | 216 | WP_149037615.1 | DUF1289 domain-containing protein | - |
| AN936_RS24645 () | 1486762..1486995 | - | 234 | WP_149037616.1 | hypothetical protein | - |
| AN936_RS06945 () | 1487166..1487501 | + | 336 | WP_054587499.1 | single-stranded DNA-binding protein | - |
| AN936_RS06950 () | 1487971..1488495 | + | 525 | WP_054587500.1 | hypothetical protein | - |
| AN936_RS06955 () | 1488495..1489553 | + | 1059 | WP_149037617.1 | relaxase/mobilization nuclease domain-containing protein | - |
| AN936_RS06960 () | 1489555..1491303 | - | 1749 | WP_054587502.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| AN936_RS06965 () | 1491378..1492241 | - | 864 | WP_054587503.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| AN936_RS06970 () | 1492234..1492851 | - | 618 | WP_054587504.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin Detail |
| AN936_RS06975 () | 1492959..1493744 | - | 786 | WP_054587505.1 | hypothetical protein | - |
| AN936_RS06980 () | 1493734..1495572 | - | 1839 | WP_084758225.1 | Protein VirD4 | VF |
| AN936_RS06985 () | 1495544..1496554 | - | 1011 | WP_054587507.1 | Type IV secretion system protein VirB11 | VF |
| AN936_RS06990 () | 1496554..1497744 | - | 1191 | WP_054587508.1 | Type IV secretion system protein virB10 | VF |
| AN936_RS06995 () | 1497744..1498610 | - | 867 | WP_054587509.1 | Type IV secretion system protein virB9 | VF |
| AN936_RS07000 () | 1498607..1499293 | - | 687 | WP_054587510.1 | Type IV secretion system protein virB8 | VF |
| AN936_RS24650 () | 1499299..1499619 | - | 321 | WP_149037618.1 | hypothetical protein | - |
| AN936_RS07005 () | 1499632..1500627 | - | 996 | WP_054587511.1 | type IV secretion system protein | - |
| AN936_RS07010 () | 1500655..1500831 | - | 177 | WP_158500062.1 | hypothetical protein | - |
| AN936_RS07015 () | 1500906..1501613 | - | 708 | WP_054587513.1 | hypothetical protein | - |
| AN936_RS07020 () | 1501632..1504022 | - | 2391 | WP_149037620.1 | Type IV secretion system protein virB4 | VF |
| AN936_RS07025 () | 1504042..1504365 | - | 324 | WP_054590148.1 | Type IV secretion system protein virB3 | VF |
| AN936_RS07030 () | 1504392..1504757 | - | 366 | WP_084758227.1 | TrbC/VirB2 family protein | - |
| AN936_RS07035 () | 1504745..1505398 | - | 654 | WP_054587515.1 | Type IV secretion system protein virB1 | VF |
| AN936_RS07040 () | 1505861..1506577 | + | 717 | WP_149037769.1 | Transcriptional activator protein LuxR | VF |
| AN936_RS07055 () | 1507923..1508291 | + | 369 | WP_054587518.1 | IS3 family transposase IS426 | Transposase |
| AN936_RS24060 () | 1508504..1508977 | - | 474 | WP_158500063.1 | Lrp/AsnC family transcriptional regulator | - |
| AN936_RS24065 () | 1509224..1509529 | - | 306 | WP_084758229.1 | sigma-70 region 4 domain-containing protein | - |
| AN936_RS07065 () | 1509762..1509941 | + | 180 | WP_054587520.1 | hypothetical protein | - |
| AN936_RS07070 () | 1510183..1510911 | - | 729 | WP_031304487.1 | IS21 family transposase ISSsp4 | Transposase |
| AN936_RS07075 () | 1510898..1512412 | - | 1515 | WP_021238707.1 | IS21 family transposase ISSsp4 | Transposase |
| AN936_RS07080 () | 1512706..1512936 | + | 231 | WP_054587521.1 | hypothetical protein | - |
| AN936_RS07085 () | 1513239..1514453 | + | 1215 | WP_006954973.1 | IS256 family transposase ISSpma2 | Transposase |
| AN936_RS07090 () | 1515145..1516116 | + | 972 | WP_054587522.1 | glucokinase | - |
| AN936_RS07095 () | 1516182..1516922 | + | 741 | WP_054587523.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| AN936_RS07100 () | 1517025..1518398 | + | 1374 | WP_054587524.1 | aspartate aminotransferase family protein | - |
| AN936_RS07105 () | 1518419..1519357 | + | 939 | WP_054587525.1 | DUF808 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|