MGE detailed information
MGE type: Genomic_island MGE length: 44842 bp
Accession: NZ_CP012667 Location: 960837..1005678 Organism: Vibrio cholerae strain ICDC-VC661 Replicon: chromosome
Accession: NZ_CP012667 Location: 960837..1005678 Organism: Vibrio cholerae strain ICDC-VC661 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AN947_RS09935 () | 957211..957894 | - | 684 | WP_000841479.1 | MFS transporter | - |
| AN947_RS09945 () | 958117..959796 | + | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| AN947_RS09950 () | 959994..960503 | + | 510 | WP_001077909.1 | hypothetical protein | - |
| AN947_RS09955 () | 960837..961541 | - | 705 | WP_001880605.1 | NERD domain-containing protein | - |
| AN947_RS09960 () | 961611..964547 | - | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| AN947_RS09965 () | 964551..965129 | - | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| AN947_RS09970 () | 965557..966024 | - | 468 | WP_000804849.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| AN947_RS09975 () | 966021..967382 | - | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| AN947_RS09985 () | 967986..968963 | + | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| AN947_RS09990 () | 968989..969669 | - | 681 | Protein_834 | IS5 family transposase | - |
| AN947_RS09995 () | 970011..971531 | - | 1521 | WP_000640055.1 | aldehyde dehydrogenase | - |
| AN947_RS10000 () | 971711..974752 | + | 3042 | WP_001880619.1 | fibronectin type III domain-containing protein | - |
| AN947_RS10005 () | 974865..979466 | + | 4602 | WP_000482254.1 | membrane protein | - |
| AN947_RS10010 () | 979463..980401 | + | 939 | WP_001232137.1 | hypothetical protein | - |
| AN947_RS10015 () | 980511..981005 | + | 495 | WP_000218964.1 | thiol peroxidase | - |
| AN947_RS10020 () | 981281..983143 | - | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| AN947_RS10025 () | 983584..984249 | + | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| AN947_RS10030 () | 984234..984644 | + | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| AN947_RS10035 () | 985188..985862 | + | 675 | WP_025989296.1 | toxin-coregulated pilus major pilin TcpA | - |
| AN947_RS10040 () | 985942..987234 | + | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| AN947_RS10045 () | 987307..987687 | + | 381 | WP_001911314.1 | TcpQ domain-containing protein | - |
| AN947_RS10050 () | 987690..989159 | + | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| AN947_RS10055 () | 989152..989607 | + | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| AN947_RS10060 () | 989595..990431 | + | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| AN947_RS10065 () | 990447..990905 | + | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| AN947_RS10070 () | 990895..992406 | + | 1512 | WP_096068385.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| AN947_RS10075 () | 992381..993403 | + | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| AN947_RS10080 () | 993413..994429 | + | 1017 | WP_025989298.1 | colonization factor TcpF | - |
| AN947_RS10085 () | 994636..995466 | + | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| AN947_RS10090 () | 995466..996227 | + | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| AN947_RS10095 () | 996234..998111 | + | 1878 | Protein_855 | methyl-accepting chemotaxis protein AcfB | - |
| AN947_RS10100 () | 998117..998888 | + | 772 | Protein_856 | accessory colonization factor AcfC | - |
| AN947_RS10105 () | 998904..999377 | + | 474 | WP_000287237.1 | RDD family protein | - |
| AN947_RS10110 () | 999386..1000294 | + | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| AN947_RS10115 () | 1000297..1000944 | - | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| AN947_RS10120 () | 1001116..1005678 | + | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| AN947_RS10125 () | 1006309..1006545 | - | 237 | WP_001919887.1 | tyrosine-type recombinase/integrase | - |
| AN947_RS10130 () | 1007188..1007588 | - | 401 | Protein_862 | transposase | - |
| AN947_RS10135 () | 1007593..1008861 | - | 1269 | WP_001107728.1 | tyrosine-type recombinase/integrase | - |
| AN947_RS10145 () | 1009463..1009948 | - | 486 | WP_000162689.1 | SsrA-binding protein SmpB | - |
| AN947_RS10150 () | 1010132..1010566 | + | 435 | WP_000815876.1 | type II toxin-antitoxin system RatA family toxin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|