MGE detailed information
MGE type: Prophage MGE length: 48302 bp
Accession: NZ_CP012546 Location: 927458..975759 Organism: Campylobacter pinnipediorum subsp. pinnipediorum strain RM17260 Replicon: chromosome
Accession: NZ_CP012546 Location: 927458..975759 Organism: Campylobacter pinnipediorum subsp. pinnipediorum strain RM17260 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPIN17260_RS04680 () | 922924..923727 | + | 804 | WP_078440938.1 | M48 family metallopeptidase | - |
| CPIN17260_RS04685 () | 923745..924014 | + | 270 | WP_069632063.1 | NifU family protein | - |
| CPIN17260_RS04690 () | 924007..924552 | + | 546 | WP_069636708.1 | histidine kinase | - |
| CPIN17260_RS04695 () | 924536..925819 | + | 1284 | WP_078440640.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| CPIN17260_RS04700 () | 925821..926171 | + | 351 | WP_069632060.1 | aspartate 1-decarboxylase | - |
| CPIN17260_RS04705 () | 926171..926779 | + | 609 | WP_069632059.1 | riboflavin synthase | - |
| CPIN17260_RS04710 () | 926743..927453 | + | 711 | WP_069632058.1 | peptidoglycan editing factor PgeF | - |
| CPIN17260_RS04715 () | 927458..927673 | + | 216 | WP_069632057.1 | hypothetical protein | - |
| CPIN17260_RS04720 () | 927984..928739 | - | 756 | WP_069632056.1 | DNA adenine methylase | - |
| CPIN17260_RS04725 () | 929593..930660 | - | 1068 | WP_069632055.1 | peptide chain release factor 1 | - |
| CPIN17260_RS04730 () | 930668..930937 | - | 270 | WP_069632054.1 | 30S ribosomal protein S20 | - |
| CPIN17260_RS04740 () | 931396..932588 | + | 1193 | Protein_917 | tyrosine-type recombinase/integrase | - |
| CPIN17260_RS04745 () | 932555..932737 | - | 183 | WP_078440641.1 | helix-turn-helix domain-containing protein | - |
| CPIN17260_RS04750 () | 932742..932951 | - | 210 | WP_078387682.1 | hypothetical protein | - |
| CPIN17260_RS04755 () | 933064..933318 | - | 255 | WP_078387683.1 | hypothetical protein | - |
| CPIN17260_RS09065 () | 933323..933481 | - | 159 | WP_110109156.1 | DNA cytosine methyltransferase | - |
| CPIN17260_RS04760 () | 933485..934201 | - | 717 | WP_078440642.1 | DNA (cytosine-5-)-methyltransferase | - |
| CPIN17260_RS04765 () | 934198..934413 | - | 216 | WP_078415509.1 | DUF3310 domain-containing protein | - |
| CPIN17260_RS04770 () | 934416..935807 | - | 1392 | WP_078387686.1 | DEAD/DEAH box helicase | - |
| CPIN17260_RS04775 () | 935818..936744 | - | 927 | WP_078387687.1 | DNA methylase | - |
| CPIN17260_RS04780 () | 936749..937087 | - | 339 | WP_078440643.1 | single-stranded DNA-binding protein | - |
| CPIN17260_RS04785 () | 937090..937587 | - | 498 | WP_078387689.1 | hypothetical protein | - |
| CPIN17260_RS09170 () | 937584..937730 | - | 147 | WP_153300935.1 | hypothetical protein | - |
| CPIN17260_RS04790 () | 937742..938638 | - | 897 | WP_078440644.1 | hypothetical protein | - |
| CPIN17260_RS04795 () | 938635..938844 | - | 210 | WP_078387691.1 | hypothetical protein | - |
| CPIN17260_RS04800 () | 938831..939142 | - | 312 | WP_078387692.1 | hypothetical protein | - |
| CPIN17260_RS04805 () | 939478..939759 | - | 282 | WP_078387694.1 | hypothetical protein | - |
| CPIN17260_RS04810 () | 940125..940370 | - | 246 | WP_078387695.1 | hypothetical protein | - |
| CPIN17260_RS04815 () | 940354..940617 | - | 264 | WP_078387696.1 | hypothetical protein | - |
| CPIN17260_RS04820 () | 940627..940812 | - | 186 | WP_078387697.1 | hypothetical protein | - |
| CPIN17260_RS04825 () | 940927..941268 | + | 342 | WP_078387698.1 | hypothetical protein | - |
| CPIN17260_RS04830 () | 941274..941576 | + | 303 | WP_099046655.1 | hypothetical protein | - |
| CPIN17260_RS04835 () | 941614..942816 | + | 1203 | WP_078440645.1 | hypothetical protein | - |
| CPIN17260_RS04840 () | 942806..942991 | + | 186 | WP_078387701.1 | hypothetical protein | - |
| CPIN17260_RS04845 () | 942981..943520 | + | 540 | WP_078440646.1 | hypothetical protein | - |
| CPIN17260_RS04850 () | 943527..943751 | + | 225 | WP_078440647.1 | hypothetical protein | - |
| CPIN17260_RS04855 () | 943742..945445 | + | 1704 | WP_078440648.1 | AAA family ATPase | - |
| CPIN17260_RS04860 () | 945533..945742 | - | 210 | WP_078387705.1 | hypothetical protein | - |
| CPIN17260_RS04865 () | 945850..946149 | + | 300 | WP_078440649.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CPIN17260_RS04870 () | 946142..946426 | + | 285 | WP_078387707.1 | putative addiction module antidote protein | Antitoxin Detail |
| CPIN17260_RS04875 () | 946429..947355 | - | 927 | WP_078440650.1 | hypothetical protein | - |
| CPIN17260_RS04880 () | 947354..947620 | + | 267 | WP_078387709.1 | hypothetical protein | - |
| CPIN17260_RS04885 () | 947773..948855 | - | 1083 | WP_078387710.1 | phage tail tape measure protein | - |
| CPIN17260_RS04890 () | 948932..949114 | + | 183 | WP_078387711.1 | hypothetical protein | - |
| CPIN17260_RS04895 () | 949219..949482 | - | 264 | WP_078415519.1 | hypothetical protein | - |
| CPIN17260_RS04900 () | 949553..950047 | - | 495 | WP_078440651.1 | phage major tail tube protein | - |
| CPIN17260_RS04905 () | 950052..950300 | - | 249 | WP_078440652.1 | hypothetical protein | - |
| CPIN17260_RS04910 () | 950303..950539 | - | 237 | WP_078440653.1 | hypothetical protein | - |
| CPIN17260_RS04915 () | 950542..951652 | - | 1111 | Protein_954 | phage tail protein | - |
| CPIN17260_RS04920 () | 952076..952393 | - | 318 | WP_078387716.1 | hypothetical protein | - |
| CPIN17260_RS04925 () | 952386..952601 | - | 216 | WP_078388205.1 | hypothetical protein | - |
| CPIN17260_RS04930 () | 952646..952981 | - | 336 | WP_078440654.1 | hypothetical protein | - |
| CPIN17260_RS04935 () | 952978..953346 | - | 369 | WP_078440655.1 | DUF1353 domain-containing protein | - |
| CPIN17260_RS04940 () | 953349..953960 | - | 612 | WP_078387719.1 | hypothetical protein | - |
| CPIN17260_RS04945 () | 953976..954602 | - | 627 | WP_078387720.1 | phage tail protein | - |
| CPIN17260_RS04950 () | 954824..955498 | - | 675 | WP_078440656.1 | phage tail protein | - |
| CPIN17260_RS04955 () | 955495..955971 | - | 477 | WP_078387722.1 | phage tail protein | - |
| CPIN17260_RS04960 () | 956086..957141 | - | 1056 | WP_078387723.1 | baseplate J/gp47 family protein | - |
| CPIN17260_RS04965 () | 957138..957428 | - | 291 | WP_157887335.1 | GPW/gp25 family protein | - |
| CPIN17260_RS04970 () | 957498..957995 | - | 498 | WP_078440657.1 | phage baseplate assembly protein V | - |
| CPIN17260_RS04975 () | 957997..958443 | - | 447 | WP_078387726.1 | hypothetical protein | - |
| CPIN17260_RS04980 () | 958446..958742 | - | 297 | WP_078440658.1 | hypothetical protein | - |
| CPIN17260_RS04985 () | 958748..959005 | - | 258 | WP_078440659.1 | hypothetical protein | - |
| CPIN17260_RS04990 () | 959027..960778 | - | 1752 | WP_078440660.1 | phage major capsid protein | - |
| CPIN17260_RS04995 () | 960771..962186 | - | 1416 | WP_078440661.1 | phage portal protein | - |
| CPIN17260_RS05000 () | 962186..962413 | - | 228 | WP_078440662.1 | hypothetical protein | - |
| CPIN17260_RS05005 () | 962481..962921 | - | 441 | WP_078440663.1 | hypothetical protein | - |
| CPIN17260_RS05010 () | 962918..963176 | - | 259 | Protein_973 | gag protein | - |
| CPIN17260_RS05015 () | 963160..964884 | - | 1725 | WP_078440664.1 | phage terminase large subunit family protein | - |
| CPIN17260_RS05020 () | 965489..965860 | + | 372 | WP_078440665.1 | hypothetical protein | - |
| CPIN17260_RS05025 () | 965853..966410 | + | 558 | WP_078440666.1 | hypothetical protein | - |
| CPIN17260_RS05030 () | 966407..966610 | + | 204 | WP_078440667.1 | tail protein X | - |
| CPIN17260_RS05035 () | 966601..967520 | + | 920 | Protein_978 | phage tail protein | - |
| CPIN17260_RS05040 () | 967810..969448 | + | 1639 | Protein_979 | lactate permease LctP family transporter | - |
| CPIN17260_RS05045 () | 969593..970531 | - | 939 | WP_078440668.1 | TAXI family TRAP transporter solute-binding subunit | - |
| CPIN17260_RS05050 () | 970625..971497 | - | 873 | WP_078440669.1 | carbon-nitrogen hydrolase | - |
| CPIN17260_RS05055 () | 971515..972381 | - | 867 | WP_078440670.1 | cation diffusion facilitator family transporter | - |
| CPIN17260_RS05060 () | 972381..973349 | - | 969 | WP_078440940.1 | agmatine deiminase family protein | - |
| CPIN17260_RS05065 () | 973352..973600 | - | 249 | WP_069636748.1 | hypothetical protein | - |
| CPIN17260_RS05070 () | 973711..974358 | + | 648 | WP_069637431.1 | amino acid ABC transporter permease | - |
| CPIN17260_RS05075 () | 974342..975013 | + | 672 | WP_099046656.1 | ABC transporter permease subunit | - |
| CPIN17260_RS05080 () | 975022..975759 | + | 738 | WP_069637433.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| CPIN17260_RS05085 () | 975821..976654 | + | 834 | WP_078440672.1 | cysteine ABC transporter substrate-binding protein | - |
| CPIN17260_RS05090 () | 976697..977815 | - | 1119 | WP_069632045.1 | cell division protein FtsZ | - |
| CPIN17260_RS05095 () | 977862..979292 | - | 1431 | WP_078440673.1 | cell division protein FtsA | - |
| CPIN17260_RS05100 () | 979298..980758 | - | 1461 | WP_078440674.1 | peptidylprolyl isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|