Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 945850..946426 Replicon chromosome
Accession NZ_CP012546
Organism Campylobacter pinnipediorum subsp. pinnipediorum strain RM17260

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag CPIN17260_RS04865 Protein ID WP_078440649.1
Coordinates 945850..946149 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag CPIN17260_RS04870 Protein ID WP_078387707.1
Coordinates 946142..946426 (+) Length 95 a.a.

Genomic Context

CPIN17260_RS04825CPIN17260_RS04830CPIN17260_RS04835CPIN17260_RS04840CPIN17260_RS04845CPIN17260_RS04850CPIN17260_RS04855CPIN17260_RS04865CPIN17260_RS04870CPIN17260_RS04880CPIN17260_RS04890CPIN17260_RS04860CPIN17260_RS04875CPIN17260_RS04885CPIN17260_RS04895CPIN17260_RS04900CPIN17260_RS04905CPIN17260_RS04910
Location: 940927..941268 (342 bp)
Type: Others
Protein ID: WP_078387698.1
Location: 941274..941576 (303 bp)
Type: Others
Protein ID: WP_099046655.1
Location: 941614..942816 (1203 bp)
Type: Others
Protein ID: WP_078440645.1
Location: 942806..942991 (186 bp)
Type: Others
Protein ID: WP_078387701.1
Location: 942981..943520 (540 bp)
Type: Others
Protein ID: WP_078440646.1
Location: 943527..943751 (225 bp)
Type: Others
Protein ID: WP_078440647.1
Location: 943742..945445 (1704 bp)
Type: Others
Protein ID: WP_078440648.1
Location: 945850..946149 (300 bp)
Type: Toxin
Protein ID: WP_078440649.1
Location: 946142..946426 (285 bp)
Type: Antitoxin
Protein ID: WP_078387707.1
Location: 947354..947620 (267 bp)
Type: Others
Protein ID: WP_078387709.1
Location: 948932..949114 (183 bp)
Type: Others
Protein ID: WP_078387711.1
Location: 945533..945742 (210 bp)
Type: Others
Protein ID: WP_078387705.1
Location: 946429..947355 (927 bp)
Type: Others
Protein ID: WP_078440650.1
Location: 947773..948855 (1083 bp)
Type: Others
Protein ID: WP_078387710.1
Location: 949219..949482 (264 bp)
Type: Others
Protein ID: WP_078415519.1
Location: 949553..950047 (495 bp)
Type: Others
Protein ID: WP_078440651.1
Location: 950052..950300 (249 bp)
Type: Others
Protein ID: WP_078440652.1
Location: 950303..950539 (237 bp)
Type: Others
Protein ID: WP_078440653.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CPIN17260_RS04825940927..941268+342WP_078387698.1hypothetical protein-
CPIN17260_RS04830941274..941576+303WP_099046655.1hypothetical protein-
CPIN17260_RS04835941614..942816+1203WP_078440645.1hypothetical protein-
CPIN17260_RS04840942806..942991+186WP_078387701.1hypothetical protein-
CPIN17260_RS04845942981..943520+540WP_078440646.1hypothetical protein-
CPIN17260_RS04850943527..943751+225WP_078440647.1hypothetical protein-
CPIN17260_RS04855943742..945445+1704WP_078440648.1AAA family ATPase-
CPIN17260_RS04860945533..945742-210WP_078387705.1hypothetical protein-
CPIN17260_RS04865945850..946149+300WP_078440649.1type II toxin-antitoxin system RelE/ParE family toxinToxin
CPIN17260_RS04870946142..946426+285WP_078387707.1putative addiction module antidote proteinAntitoxin
CPIN17260_RS04875946429..947355-927WP_078440650.1hypothetical protein-
CPIN17260_RS04880947354..947620+267WP_078387709.1hypothetical protein-
CPIN17260_RS04885947773..948855-1083WP_078387710.1phage tail tape measure protein-
CPIN17260_RS04890948932..949114+183WP_078387711.1hypothetical protein-
CPIN17260_RS04895949219..949482-264WP_078415519.1hypothetical protein-
CPIN17260_RS04900949553..950047-495WP_078440651.1phage major tail tube protein-
CPIN17260_RS04905950052..950300-249WP_078440652.1hypothetical protein-
CPIN17260_RS04910950303..950539-237WP_078440653.1hypothetical protein-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideProphage--927458..97575948301


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Addiction module killer protein, predicted

(1-96)

Antitoxin

Uncharacterized protein HI1420

(3-93)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11415.09 Da        Isoelectric Point: 9.6406

>T56618 WP_078440649.1 NZ_CP012546:945850-946149 [Campylobacter pinnipediorum subsp. pinnipediorum]
MYTIKQTDYFSKWLIKLKDIRGKVSILRRIERIKDGNFGDCKSVGNNISELRITTGPGYRVYYTNKNDEIIILLVGGDKS
TQSNDIKKANEILKDLENE

Download         Length: 300 bp

>T56618 NZ_CP012546:945850-946149 [Campylobacter pinnipediorum subsp. pinnipediorum]
ATGTATACAATAAAACAAACTGATTACTTTTCAAAATGGCTAATAAAGCTTAAAGATATAAGGGGCAAAGTTTCAATTTT
GCGAAGAATTGAAAGAATAAAAGATGGTAACTTTGGAGATTGCAAATCAGTTGGTAACAATATAAGCGAACTAAGAATTA
CAACTGGTCCAGGATATAGAGTTTATTACACAAATAAAAACGATGAGATTATTATTTTATTAGTTGGCGGGGATAAATCA
ACTCAAAGTAATGATATTAAAAAAGCAAATGAAATTTTAAAGGATTTAGAAAATGAGTAA

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10394.93 Da        Isoelectric Point: 5.0477

>AT56618 WP_078387707.1 NZ_CP012546:946142-946426 [Campylobacter pinnipediorum subsp. pinnipediorum]
MSKTQITDFDISQYLDNQEVIAEYISQILADGDMDELLDALGNIAKAKGMSQIAKDTGLGRESLYKTFHKGSKPKFDTIM
KLISSFGLKMQVSA

Download         Length: 285 bp

>AT56618 NZ_CP012546:946142-946426 [Campylobacter pinnipediorum subsp. pinnipediorum]
ATGAGTAAAACACAAATAACGGATTTTGATATATCTCAGTATTTAGACAATCAAGAAGTCATAGCAGAATATATATCTCA
AATCTTAGCCGATGGTGATATGGATGAGTTACTAGACGCACTTGGCAATATAGCAAAAGCCAAAGGCATGAGCCAAATAG
CAAAAGACACAGGGCTGGGCAGAGAAAGTTTATATAAAACCTTTCACAAAGGAAGTAAACCAAAGTTTGATACTATAATG
AAACTTATATCTTCTTTTGGTTTAAAAATGCAAGTTAGCGCATAA

Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References