MGE detailed information
MGE type: IScluster/Tn MGE length: 12923 bp
Accession: NZ_CP012501 Location: 74..12996 Organism: Escherichia coli strain 08-00022 Replicon: plasmid pCFSAN004179G
Accession: NZ_CP012501 Location: 74..12996 Organism: Escherichia coli strain 08-00022 Replicon: plasmid pCFSAN004179G
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CP48_RS00010 () | 74..403 | - | 330 | WP_001137792.1 | IS66 family transposase ISEc49 | Transposase |
| CP48_RS00015 () | 519..731 | + | 213 | WP_001364091.1 | hypothetical protein | - |
| CP48_RS00020 () | 1058..1267 | + | 210 | WP_001355319.1 | hemolysin expression modulator Hha | - |
| CP48_RS31810 () | 1305..1478 | + | 174 | WP_157839839.1 | hypothetical protein | - |
| - () | 1733..1789 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1733..1789 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1733..1789 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1733..1789 | - | 57 | NuclAT_1 | - | Antitoxin Detail |
| CP48_RS00030 () | 1837..1986 | + | 150 | WP_001312851.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CP48_RS00035 () | 2270..2518 | + | 249 | WP_000083838.1 | replication regulatory protein RepA | - |
| CP48_RS00040 () | 2762..2836 | + | 75 | WP_001364037.1 | RepA leader peptide Tap | - |
| CP48_RS00045 () | 2829..3686 | + | 858 | WP_000829162.1 | incFII family plasmid replication initiator RepA | - |
| CP48_RS30100 () | 4816..6186 | - | 1371 | Protein_9 | IS3 family transposase | - |
| CP48_RS00065 () | 6232..6417 | + | 186 | Protein_10 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CP48_RS00070 () | 6417..6704 | + | 288 | WP_174498321.1 | helix-turn-helix transcriptional regulator | - |
| CP48_RS00075 () | 6962..7441 | - | 480 | Protein_12 | IS91 family transposase IS91 | Transposase |
| CP48_RS00080 () | 7544..8716 | + | 1173 | WP_040091195.1 | IS21 family transposase IS21 | Transposase |
| CP48_RS30990 () | 8716..9315 | + | 600 | Protein_14 | IS21 family transposase IS21 | Transposase |
| CP48_RS30995 () | 9384..9749 | + | 366 | Protein_15 | IS21 family transposase IS21 | Transposase |
| CP48_RS31000 () | 9855..9986 | - | 132 | Protein_16 | IS91 family transposase ISEc37 | Transposase |
| CP48_RS00095 () | 9986..10351 | - | 366 | WP_040091197.1 | hypothetical protein | - |
| CP48_RS00100 () | 10421..10927 | - | 507 | WP_047088605.1 | hypothetical protein | - |
| CP48_RS00105 () | 12352..12666 | + | 315 | Protein_19 | hypothetical protein | - |
| CP48_RS30110 () | 12724..13418 | + | 695 | WP_085948397.1 | IS1 family transposase | - |
| CP48_RS00125 () | 13910..14254 | - | 345 | WP_024166186.1 | hypothetical protein | - |
| CP48_RS00130 () | 14680..16335 | + | 1656 | WP_040091166.1 | L-lactate permease | - |
| CP48_RS00135 () | 16335..17111 | + | 777 | WP_000217412.1 | transcriptional regulator LldR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|