MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 82130 bp
Accession: NZ_CP012416 Location: 1..82130 Organism: Piscirickettsia salmonis strain PM15972A1 Replicon: plasmid pPSA1-3
Accession: NZ_CP012416 Location: 1..82130 Organism: Piscirickettsia salmonis strain PM15972A1 Replicon: plasmid pPSA1-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KW89_RS15870 () | 101..292 | + | 192 | WP_054300607.1 | hypothetical protein | - |
| KW89_RS15875 () | 670..927 | + | 258 | WP_155053509.1 | hypothetical protein | - |
| KW89_RS15880 () | 1083..1727 | + | 645 | WP_054300609.1 | hypothetical protein | - |
| KW89_RS15885 () | 1729..2049 | + | 321 | WP_054300610.1 | hypothetical protein | - |
| KW89_RS15890 () | 2064..2354 | + | 291 | WP_054300611.1 | type IV conjugative transfer system protein TraL | - |
| KW89_RS15895 () | 2362..2931 | + | 570 | WP_054300612.1 | hypothetical protein | - |
| KW89_RS15900 () | 2924..3628 | + | 705 | WP_054300613.1 | type-F conjugative transfer system secretin TraK | - |
| KW89_RS15905 () | 3638..5107 | + | 1470 | WP_054300614.1 | hypothetical protein | - |
| KW89_RS15910 () | 5113..5556 | + | 444 | WP_054300615.1 | type IV conjugative transfer system lipoprotein TraV | - |
| KW89_RS15915 () | 5644..6666 | + | 1023 | WP_054300616.1 | type IV secretion system DNA-binding domain-containing protein | - |
| KW89_RS15920 () | 6715..9294 | + | 2580 | WP_054300617.1 | type IV secretion system protein TraC | - |
| KW89_RS15925 () | 9305..9628 | + | 324 | WP_172673425.1 | hypothetical protein | - |
| KW89_RS15930 () | 9621..10238 | + | 618 | WP_054300619.1 | type-F conjugative transfer system protein TraW | - |
| KW89_RS15935 () | 10257..10727 | + | 471 | WP_054300620.1 | hypothetical protein | - |
| KW89_RS15940 () | 10741..11043 | + | 303 | WP_054300621.1 | hypothetical protein | - |
| KW89_RS15945 () | 11079..11381 | + | 303 | WP_054300622.1 | hypothetical protein | - |
| KW89_RS15950 () | 11374..12363 | + | 990 | WP_054300623.1 | conjugal transfer pilus assembly protein TraU | - |
| KW89_RS15955 () | 12374..13042 | + | 669 | WP_054300624.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| KW89_RS15960 () | 13042..14937 | + | 1896 | WP_054300625.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| KW89_RS15965 () | 14934..15746 | + | 813 | WP_054300626.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| KW89_RS15970 () | 15743..16234 | + | 492 | WP_054300627.1 | conjugal transfer protein TraF | - |
| KW89_RS15975 () | 16227..17609 | + | 1383 | WP_054300628.1 | conjugal transfer protein TraH | - |
| KW89_RS15980 () | 17611..20400 | + | 2790 | WP_054300629.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| KW89_RS15985 () | 20408..20725 | - | 318 | WP_054300630.1 | hypothetical protein | - |
| KW89_RS15990 () | 20808..21551 | + | 744 | WP_054300631.1 | complement resistance protein TraT | - |
| KW89_RS15995 () | 21590..21910 | + | 321 | WP_054300632.1 | hypothetical protein | - |
| KW89_RS16005 () | 22478..24472 | + | 1995 | WP_054300634.1 | type IV conjugative transfer system coupling protein TraD | - |
| KW89_RS16010 () | 24475..25224 | + | 750 | WP_054300635.1 | thioredoxin domain-containing protein | - |
| KW89_RS16015 () | 25236..25415 | + | 180 | WP_054300636.1 | hypothetical protein | - |
| KW89_RS16020 () | 25506..31484 | + | 5979 | WP_081007081.1 | Multifunctional conjugation protein TraI | Relaxase |
| KW89_RS16025 () | 31479..31808 | - | 330 | WP_054300638.1 | hypothetical protein | - |
| KW89_RS16030 () | 31799..32242 | - | 444 | WP_054300639.1 | hypothetical protein | - |
| KW89_RS16035 () | 32829..33122 | + | 294 | WP_036774899.1 | hypothetical protein | - |
| KW89_RS16040 () | 33186..33974 | - | 789 | WP_054300640.1 | hypothetical protein | - |
| KW89_RS17535 () | 34178..35064 | + | 887 | WP_155047025.1 | IS630 family transposase ISAcma25 | Transposase |
| KW89_RS16055 () | 35068..35556 | - | 489 | WP_054300642.1 | DnaJ domain-containing protein | - |
| KW89_RS16060 () | 35625..35996 | - | 372 | WP_047927049.1 | hypothetical protein | - |
| KW89_RS16065 () | 36444..36677 | + | 234 | WP_027242580.1 | hypothetical protein | - |
| KW89_RS16070 () | 36854..39040 | + | 2187 | WP_027242581.1 | ATP-dependent RecD-like DNA helicase | - |
| KW89_RS16075 () | 39050..39451 | - | 402 | WP_027242582.1 | helix-turn-helix domain-containing protein | - |
| KW89_RS16080 () | 39448..39759 | - | 312 | WP_027242583.1 | type II toxin-antitoxin system HigB family toxin | - |
| KW89_RS16085 () | 39873..40142 | - | 270 | WP_054300643.1 | WGR domain-containing protein | - |
| KW89_RS16090 () | 40239..42101 | + | 1863 | WP_027242576.1 | RecX family transcriptional regulator | - |
| KW89_RS16095 () | 42135..42620 | + | 486 | WP_027242575.1 | hypothetical protein | - |
| KW89_RS16100 () | 42631..42858 | - | 228 | Protein_44 | transposase | - |
| KW89_RS17540 () | 42854..43030 | + | 177 | Protein_45 | IS30 family transposase ISAs2 | Transposase |
| KW89_RS16105 () | 43027..43371 | - | 345 | WP_054300644.1 | hypothetical protein | - |
| KW89_RS16110 () | 43480..43791 | - | 312 | WP_054300645.1 | HU family DNA-binding protein | - |
| KW89_RS16115 () | 43848..44819 | + | 972 | WP_054300646.1 | IS701 family transposase ISMhu9 | Transposase |
| KW89_RS18375 () | 44816..44992 | - | 177 | WP_172673426.1 | transposase | - |
| KW89_RS16120 () | 45067..45222 | - | 156 | Protein_50 | DNA-binding protein | - |
| KW89_RS16125 () | 45396..45695 | + | 300 | WP_075273685.1 | HU family DNA-binding protein | - |
| KW89_RS16130 () | 45808..47508 | + | 1701 | WP_054300647.1 | DUF4338 domain-containing protein | - |
| KW89_RS16135 () | 47534..48769 | + | 1236 | WP_054300648.1 | hypothetical protein | - |
| KW89_RS16140 () | 48886..49212 | - | 327 | WP_054300674.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| KW89_RS16145 () | 49214..49456 | - | 243 | WP_054300649.1 | hypothetical protein | Antitoxin Detail |
| KW89_RS16150 () | 49870..50190 | - | 321 | WP_054300650.1 | hypothetical protein | - |
| KW89_RS16155 () | 50211..50645 | - | 435 | WP_054300651.1 | hypothetical protein | - |
| KW89_RS16160 () | 50652..51059 | - | 408 | WP_054300652.1 | hypothetical protein | - |
| KW89_RS16165 () | 51158..51466 | - | 309 | WP_081007087.1 | helix-turn-helix transcriptional regulator | - |
| KW89_RS16170 () | 51516..51776 | - | 261 | WP_054300654.1 | hypothetical protein | - |
| KW89_RS16175 () | 51838..52395 | - | 558 | WP_054300675.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| KW89_RS16180 () | 52778..55477 | + | 2700 | WP_075278623.1 | ATP-dependent helicase | - |
| KW89_RS16185 () | 55542..55805 | - | 264 | WP_054300655.1 | RNA-binding protein | - |
| KW89_RS16190 () | 56297..56560 | + | 264 | WP_054300656.1 | hypothetical protein | - |
| KW89_RS16195 () | 56562..56900 | + | 339 | WP_054300657.1 | hypothetical protein | - |
| KW89_RS16200 () | 57027..58031 | + | 1005 | WP_075273679.1 | SIR2 family protein | - |
| KW89_RS16205 () | 58044..59768 | + | 1725 | WP_054300659.1 | ATP-binding protein | - |
| KW89_RS16215 () | 60272..62539 | - | 2268 | WP_054300661.1 | hypothetical protein | - |
| KW89_RS16225 () | 63288..66677 | - | 3390 | WP_054300676.1 | TM0106 family RecB-like putative nuclease | - |
| KW89_RS16230 () | 66754..68112 | - | 1359 | WP_075273687.1 | DEAD/DEAH box helicase | - |
| KW89_RS16235 () | 68202..68768 | - | 567 | WP_054300664.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| KW89_RS16240 () | 68772..69458 | - | 687 | WP_017377658.1 | Fic family protein | - |
| KW89_RS16245 () | 69956..70480 | - | 525 | WP_016212199.1 | hypothetical protein | - |
| KW89_RS16250 () | 70473..71495 | - | 1023 | WP_016212198.1 | AAA family ATPase | - |
| KW89_RS16255 () | 72550..73596 | + | 1047 | WP_033923684.1 | hypothetical protein | - |
| KW89_RS16260 () | 74145..74930 | + | 786 | WP_054300665.1 | class I SAM-dependent methyltransferase | - |
| KW89_RS16265 () | 74998..76128 | + | 1131 | WP_054300584.1 | hypothetical protein | - |
| KW89_RS16270 () | 76167..76607 | + | 441 | WP_054300583.1 | thioesterase family protein | - |
| KW89_RS16275 () | 76615..77352 | + | 738 | WP_054300666.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| KW89_RS16280 () | 77349..77918 | - | 570 | WP_054300667.1 | hypothetical protein | - |
| KW89_RS18160 () | 78025..78597 | - | 573 | WP_155047022.1 | helix-turn-helix transcriptional regulator | - |
| KW89_RS16290 () | 79051..79764 | + | 714 | WP_054300669.1 | class I SAM-dependent methyltransferase | - |
| KW89_RS16295 () | 79777..80250 | + | 474 | WP_054300670.1 | hypothetical protein | - |
| KW89_RS16300 () | 80266..81009 | + | 744 | WP_081007085.1 | queuosine precursor transporter | - |
| KW89_RS16305 () | 81009..81455 | + | 447 | WP_054300671.1 | helix-turn-helix domain-containing protein | - |
| KW89_RS16310 () | 81427..82041 | - | 615 | WP_054300672.1 | helix-turn-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|