MGE detailed information
MGE type: Genomic_island MGE length: 52960 bp
Accession: NZ_CP012140 Location: 2167402..2220361 Organism: Shigella flexneri 4c strain 1205 Replicon: chromosome
Accession: NZ_CP012140 Location: 2167402..2220361 Organism: Shigella flexneri 4c strain 1205 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AD871_RS12055 (2162477) | 2162477..2162788 | - | 312 | WP_000489563.1 | protein YmdA | - |
| AD871_RS12060 (2162909) | 2162909..2163100 | - | 192 | Protein_2205 | curli assembly protein CsgC | - |
| AD871_RS28940 (2163172) | 2163172..2164340 | + | 1169 | WP_000747032.1 | IS3-like element IS911 family transposase | - |
| AD871_RS12070 (2164337) | 2164337..2164493 | - | 157 | Protein_2207 | curli assembly protein CsgC | - |
| AD871_RS12075 (2164552) | 2164552..2164917 | - | 366 | WP_001144017.1 | curli major subunit CsgA | - |
| AD871_RS28945 (2164944) | 2164944..2165979 | - | 1036 | Protein_2209 | IS3 family transposase | - |
| AD871_RS28950 (2166045) | 2166045..2166152 | - | 108 | Protein_2210 | curlin | - |
| AD871_RS12090 (2166193) | 2166193..2166648 | - | 456 | WP_005047380.1 | curli minor subunit CsgB | - |
| AD871_RS12100 (2167402) | 2167402..2168052 | + | 651 | WP_000481500.1 | CsgBAC operon transcriptional regulatory protein | VF |
| AD871_RS12105 (2168057) | 2168057..2168446 | + | 390 | WP_000833291.1 | Curli production assembly/transport component CsgE | VF |
| AD871_RS12110 (2168471) | 2168471..2168887 | + | 417 | WP_001264088.1 | Curli production assembly/transport component CsgF | VF |
| AD871_RS12115 (2168914) | 2168914..2169689 | + | 776 | Protein_2215 | curli production assembly/transport protein CsgG | - |
| AD871_RS12120 (2169753) | 2169753..2170244 | - | 492 | WP_001297187.1 | DUF1097 domain-containing protein | - |
| AD871_RS12125 (2170346) | 2170346..2170900 | - | 555 | WP_001001915.1 | molecular chaperone YcdY | - |
| AD871_RS12130 (2170924) | 2170924..2171661 | - | 738 | WP_000283673.1 | zinc-binding phosphatase | - |
| AD871_RS12135 (2171716) | 2171716..2172654 | - | 939 | Protein_2219 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| AD871_RS12145 (2173126) | 2173126..2173407 | - | 282 | Protein_2220 | DUF4942 domain-containing protein | - |
| AD871_RS12150 (2173689) | 2173689..2174693 | - | 1005 | WP_001179707.1 | IS110 family transposase ISSfl8 | Transposase |
| AD871_RS12155 (2174765) | 2174765..2175325 | - | 561 | Protein_2222 | DUF4942 domain-containing protein | - |
| AD871_RS12160 (2175410) | 2175410..2175607 | - | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| AD871_RS12165 (2175619) | 2175619..2176110 | - | 492 | WP_000976828.1 | DUF5983 family protein | - |
| AD871_RS12170 (2176107) | 2176107..2176481 | - | 375 | WP_000854917.1 | TA system toxin CbtA family protein | Toxin Detail |
| AD871_RS12175 (2176528) | 2176528..2176902 | - | 375 | WP_001280958.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| AD871_RS12185 (2177065) | 2177065..2177286 | - | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| AD871_RS12190 (2177349) | 2177349..2177825 | - | 477 | WP_005011624.1 | RadC family protein | - |
| AD871_RS12195 (2177841) | 2177841..2178314 | - | 474 | WP_005011597.1 | antirestriction protein | - |
| AD871_RS12200 (2178656) | 2178656..2179477 | - | 822 | WP_001234584.1 | DUF932 domain-containing protein | - |
| AD871_RS28955 (2179577) | 2179577..2179750 | - | 174 | WP_000088744.1 | DUF905 family protein | - |
| AD871_RS30535 (2179870) | 2179870..2180133 | - | 264 | WP_000466628.1 | DNA polymerase III subunit gamma/tau | - |
| AD871_RS12220 (2181072) | 2181072..2181488 | - | 417 | WP_000275180.1 | Transposon Tn10 TetD protein | VF |
| AD871_RS12225 (2181576) | 2181576..2182169 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| AD871_RS12230 (2182282) | 2182282..2183487 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| AD871_RS12235 (2183569) | 2183569..2184192 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| AD871_RS28960 (2184170) | 2184170..2184559 | - | 390 | Protein_2238 | transcriptional regulator | - |
| AD871_RS12245 (2185361) | 2185361..2186199 | - | 839 | Protein_2240 | Streptomycin 3''-adenylyltransferase | ARG |
| AD871_RS12250 (2186312) | 2186312..2187142 | - | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| AD871_RS12255 (2187352) | 2187352..2188365 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| AD871_RS28965 (2188568) | 2188568..2188918 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| AD871_RS12270 (2189044) | 2189044..2189604 | + | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| AD871_RS12275 (2189607) | 2189607..2192558 | + | 2952 | WP_015344976.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| AD871_RS12280 (2192625) | 2192625..2193001 | + | 377 | Protein_2246 | GNAT family N-acetyltransferase | - |
| AD871_RS12285 (2193202) | 2193202..2193861 | - | 660 | WP_000412211.1 | Chloramphenicol acetyltransferase | ARG |
| AD871_RS12295 (2194140) | 2194140..2194837 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| AD871_RS28970 (2194854) | 2194854..2194976 | + | 123 | Protein_2249 | transcriptional regulator | - |
| AD871_RS12300 (2194954) | 2194954..2195577 | - | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| AD871_RS12305 (2195659) | 2195659..2196864 | + | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| AD871_RS12310 (2196977) | 2196977..2197570 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| AD871_RS12315 (2197658) | 2197658..2198074 | + | 417 | WP_000275180.1 | Transposon Tn10 TetD protein | VF |
| AD871_RS12320 (2198133) | 2198133..2198830 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| AD871_RS12325 (2198847) | 2198847..2199335 | + | 489 | Protein_2255 | putative hexosyltransferase CapU | - |
| AD871_RS12330 (2199340) | 2199340..2200290 | + | 951 | WP_005086346.1 | virulence factor VirK | - |
| AD871_RS12335 (2200355) | 2200355..2201299 | + | 945 | WP_001411475.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| AD871_RS28975 (2201480) | 2201480..2202619 | + | 1140 | WP_000088357.1 | IS3 family transposase ISSd1 | Transposase |
| AD871_RS12345 (2202773) | 2202773..2204766 | + | 1994 | Protein_2259 | choline BCCT transporter BetT | - |
| AD871_RS30540 (2204828) | 2204828..2206096 | + | 1269 | Protein_2260 | DUF2254 domain-containing protein | - |
| AD871_RS12365 (2207605) | 2207605..2207823 | + | 219 | WP_000145481.1 | TetR/AcrR family transcriptional regulator | - |
| AD871_RS28990 (2207874) | 2207874..2208239 | - | 366 | Protein_2263 | IS21 family transposase IS100kyp | Transposase |
| AD871_RS28995 (2208342) | 2208342..2209081 | + | 740 | Protein_2264 | IS3 family transposase IS629 | Transposase |
| AD871_RS12395 (2209754) | 2209754..2211262 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| AD871_RS12400 (2211352) | 2211352..2211825 | + | 474 | Protein_2266 | IS3 family transposase IS629 | Transposase |
| AD871_RS12405 (2211865) | 2211865..2212206 | - | 342 | WP_000287886.1 | inovirus-type Gp2 protein | - |
| AD871_RS29000 (2212234) | 2212234..2212789 | - | 556 | Protein_2268 | inovirus Gp2 family protein | - |
| AD871_RS30545 (2212859) | 2212859..2213205 | - | 347 | Protein_2269 | DEAD/DEAH box helicase | - |
| AD871_RS12425 (2213312) | 2213312..2213875 | - | 564 | WP_000282110.1 | inovirus-type Gp2 protein | - |
| AD871_RS12430 (2215250) | 2215250..2217085 | - | 1836 | WP_001258873.1 | hypothetical protein | - |
| AD871_RS12435 (2217186) | 2217186..2217473 | + | 288 | WP_000070931.1 | AlpA family transcriptional regulator | - |
| AD871_RS12440 (2217445) | 2217445..2218974 | + | 1530 | WP_005067490.1 | DUF3987 domain-containing protein | - |
| AD871_RS12445 (2219144) | 2219144..2220361 | - | 1218 | WP_000279879.1 | Prophage integrase IntA ; Integrase | Integrase |
| AD871_RS12450 (2220728) | 2220728..2221714 | - | 987 | WP_000611853.1 | protein YcdU | - |
| AD871_RS12455 (2221711) | 2221711..2222239 | - | 529 | Protein_2276 | ACP S-malonyltransferase | - |
| AD871_RS12465 (2222306) | 2222306..2223468 | + | 1163 | WP_085947598.1 | IS3-like element IS3 family transposase | - |
| AD871_RS12470 (2223578) | 2223578..2224366 | - | 789 | WP_005047400.1 | phosphate starvation-inducible protein PhoH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|