MGE detailed information
MGE type: Prophage MGE length: 61855 bp
Accession: NZ_CP012140 Location: 1796158..1858012 Organism: Shigella flexneri 4c strain 1205 Replicon: chromosome
Accession: NZ_CP012140 Location: 1796158..1858012 Organism: Shigella flexneri 4c strain 1205 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AD871_RS09945 () | 1792706..1793677 | + | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
| AD871_RS09950 () | 1793740..1794540 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| AD871_RS09955 () | 1794553..1795404 | + | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| AD871_RS09960 () | 1795459..1795935 | + | 477 | WP_000156246.1 | DUF986 family protein | - |
| AD871_RS28805 () | 1795964..1796661 | + | 698 | WP_227804321.1 | IS1 family transposase IS1X2 | Transposase |
| AD871_RS09975 () | 1797124..1797690 | + | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| AD871_RS09980 () | 1797687..1798496 | - | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| AD871_RS09985 () | 1798662..1798871 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| AD871_RS09990 () | 1798884..1799027 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| AD871_RS10000 () | 1799698..1799985 | - | 288 | WP_001006860.1 | YebO family protein | - |
| AD871_RS10005 () | 1800060..1800203 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| AD871_RS10010 () | 1800362..1800601 | + | 240 | WP_001211010.1 | YobH family protein | - |
| AD871_RS10015 () | 1800744..1801535 | - | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| AD871_RS10020 () | 1801712..1803085 | + | 1374 | WP_001127218.1 | MFS transporter | - |
| AD871_RS10025 () | 1803131..1804012 | - | 882 | WP_000984517.1 | protease HtpX | - |
| AD871_RS10030 () | 1804204..1806252 | - | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| AD871_RS10035 () | 1806272..1806970 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| AD871_RS10040 () | 1807067..1807564 | - | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| AD871_RS10045 () | 1807694..1808977 | + | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| AD871_RS10050 () | 1808946..1811566 | + | 2621 | Protein_1828 | hypothetical protein | VF |
| AD871_RS10055 () | 1811646..1813085 | + | 1440 | Protein_1829 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AD871_RS10060 () | 1813203..1813439 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AD871_RS10065 () | 1813544..1813735 | + | 192 | WP_005049838.1 | YebW family protein | - |
| AD871_RS10070 () | 1813760..1813948 | - | 189 | Protein_1832 | serine/threonine-protein phosphatase | - |
| AD871_RS10085 () | 1815213..1815659 | - | 447 | Protein_1834 | metallophosphoesterase | - |
| AD871_RS10095 () | 1817178..1818893 | + | 1716 | WP_128568580.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| AD871_RS30495 () | 1818963..1819067 | - | 105 | Protein_1837 | tail fiber assembly protein | - |
| AD871_RS10105 () | 1819073..1819696 | - | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| AD871_RS30020 () | 1819647..1819814 | - | 168 | Protein_1839 | IS66 family transposase ISSfl3 | Transposase |
| AD871_RS30025 () | 1819816..1820196 | - | 381 | Protein_1840 | IS66 family transposase ISSfl3 | Transposase |
| AD871_RS10120 () | 1821420..1822308 | + | 889 | Protein_1841 | Rha family transcriptional regulator | - |
| AD871_RS10130 () | 1822305..1823578 | + | 1274 | WP_094081546.1 | IS3 family transposase IS2 | Transposase |
| AD871_RS10135 () | 1823655..1823876 | + | 222 | WP_000560210.1 | cell division protein FtsZ | - |
| AD871_RS10140 () | 1823876..1824046 | + | 171 | WP_001359121.1 | YdaE family protein | - |
| AD871_RS10145 () | 1824121..1824396 | + | 276 | WP_005049830.1 | hypothetical protein | - |
| AD871_RS10150 () | 1824496..1825911 | + | 1416 | Protein_1846 | exodeoxyribonuclease VIII | - |
| AD871_RS10155 () | 1825968..1827124 | - | 1157 | Protein_1847 | IS3 family transposase IS600 | Transposase |
| AD871_RS10160 () | 1827223..1827483 | + | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| AD871_RS10165 () | 1827489..1828586 | + | 1098 | WP_001173294.1 | AAA family ATPase | - |
| AD871_RS28810 () | 1828661..1829870 | + | 1210 | Protein_1850 | IS3 family transposase IS629 | Transposase |
| AD871_RS10185 () | 1829918..1830085 | + | 168 | WP_005049823.1 | excisionase family protein | - |
| AD871_RS28815 () | 1830087..1830257 | + | 171 | Protein_1852 | DUF3596 domain-containing protein | - |
| AD871_RS28820 () | 1831025..1831666 | + | 642 | Protein_1854 | Putative defective protein IntQ ; Integrase | Integrase |
| AD871_RS10200 () | 1832098..1833012 | + | 915 | WP_000555620.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| AD871_RS10205 () | 1833012..1833839 | + | 828 | WP_000983722.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| AD871_RS10210 () | 1833836..1834693 | + | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| AD871_RS10215 () | 1834690..1835547 | + | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| AD871_RS10220 () | 1835748..1836371 | - | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| AD871_RS10225 () | 1836322..1837590 | - | 1269 | WP_005098694.1 | prophage tail fiber N-terminal domain-containing protein | - |
| AD871_RS10230 () | 1837614..1838158 | - | 545 | Protein_1861 | tail fiber assembly protein | - |
| AD871_RS30030 () | 1838182..1838550 | - | 369 | WP_011069357.1 | hypothetical protein | - |
| AD871_RS10240 () | 1838578..1839483 | - | 906 | Protein_1863 | IS3 family transposase ISSd1 | Transposase |
| AD871_RS10250 () | 1840255..1840407 | - | 153 | Protein_1865 | Rha family transcriptional regulator | - |
| AD871_RS10265 () | 1842775..1844379 | - | 1605 | WP_000615491.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| AD871_RS10290 () | 1845013..1845495 | - | 483 | WP_000068107.1 | ORF6N domain-containing protein | - |
| AD871_RS10295 () | 1845566..1846705 | - | 1140 | WP_000088354.1 | IS3 family transposase ISSd1 | Transposase |
| AD871_RS10300 () | 1846767..1846940 | - | 174 | WP_000504450.1 | hypothetical protein | - |
| AD871_RS10305 () | 1847093..1847647 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| AD871_RS10310 () | 1847644..1847934 | - | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| AD871_RS10315 () | 1847934..1848533 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| AD871_RS28825 () | 1848667..1849364 | + | 698 | WP_227804315.1 | IS1 family transposase IS1X2 | Transposase |
| AD871_RS10335 () | 1849870..1850025 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 1850037..1850095 | + | 59 | - | - | Antitoxin Detail |
| AD871_RS10345 () | 1850480..1850845 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| AD871_RS10350 () | 1850845..1851510 | - | 666 | WP_000208062.1 | hypothetical protein | - |
| AD871_RS10355 () | 1851507..1851872 | - | 366 | WP_001229297.1 | HNH endonuclease signature motif containing protein | - |
| AD871_RS10360 () | 1851874..1852092 | - | 219 | WP_000256998.1 | DUF4014 family protein | - |
| AD871_RS10365 () | 1852185..1852541 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| AD871_RS10370 () | 1852599..1853021 | - | 423 | WP_001118168.1 | DUF977 family protein | - |
| AD871_RS10375 () | 1853036..1853782 | - | 747 | WP_000788996.1 | ATP-binding protein | - |
| AD871_RS30500 () | 1853928..1854097 | - | 170 | Protein_1883 | hypothetical protein | - |
| AD871_RS10390 () | 1854621..1855849 | + | 1229 | WP_167547301.1 | IS3 family transposase IS2 | Transposase |
| AD871_RS28830 () | 1855863..1856273 | - | 411 | Protein_1885 | YdaU family protein | - |
| AD871_RS10400 () | 1856377..1857533 | + | 1157 | WP_094081493.1 | IS3 family transposase IS600 | Transposase |
| AD871_RS10405 () | 1857578..1858012 | - | 435 | Protein_1887 | HTH-type transcriptional regulator PgrR | VF |
| AD871_RS10410 () | 1858150..1859070 | + | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| AD871_RS30040 () | 1859070..1859429 | + | 360 | Protein_1889 | alpha/beta hydrolase | - |
| AD871_RS10420 () | 1859446..1860642 | - | 1197 | WP_045177644.1 | IS110-like element ISSfl4 family transposase | - |
| AD871_RS10425 () | 1860871..1861452 | + | 582 | Protein_1891 | alpha/beta hydrolase | - |
| AD871_RS10430 () | 1861470..1862108 | + | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|