MGE detailed information
MGE type: Prophage MGE length: 71207 bp
Accession: NZ_CP012140 Location: 1133896..1205102 Organism: Shigella flexneri 4c strain 1205 Replicon: chromosome
Accession: NZ_CP012140 Location: 1133896..1205102 Organism: Shigella flexneri 4c strain 1205 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AD871_RS05980 () | 1128922..1129194 | + | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| AD871_RS05985 () | 1129228..1129925 | + | 698 | WP_232046035.1 | IS1 family transposase | - |
| AD871_RS05990 () | 1129947..1130201 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| AD871_RS05995 () | 1130284..1131108 | + | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| AD871_RS06000 () | 1131154..1132137 | + | 984 | WP_000803326.1 | LysR substrate-binding domain-containing protein | - |
| AD871_RS28545 () | 1132298..1132360 | + | 63 | WP_097433929.1 | membrane protein YoeI | - |
| AD871_RS06005 () | 1132350..1133708 | + | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| AD871_RS06010 () | 1133887..1134945 | + | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| AD871_RS06015 () | 1134959..1135186 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| AD871_RS06020 () | 1135229..1136653 | - | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| AD871_RS06025 () | 1136835..1137671 | + | 837 | Protein_1105 | Prophage integrase IntA ; Integrase | Integrase |
| AD871_RS06030 () | 1137753..1138427 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| AD871_RS06035 () | 1138424..1138774 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| AD871_RS06040 () | 1138771..1139676 | + | 906 | Protein_1108 | IS66 family transposase ISSfl3 | Transposase |
| AD871_RS06050 () | 1139766..1140994 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| AD871_RS28550 () | 1141007..1141294 | + | 288 | Protein_1110 | transposase | - |
| AD871_RS06060 () | 1141359..1142515 | + | 1157 | WP_175868071.1 | IS3 family transposase IS600 | Transposase |
| AD871_RS06065 () | 1142559..1142975 | + | 417 | Protein_1112 | IS66 family transposase ISSfl3 | Transposase |
| AD871_RS06070 () | 1143005..1143358 | + | 354 | Protein_1113 | hypothetical protein ; Integrase | Integrase |
| AD871_RS06075 () | 1143410..1143796 | - | 387 | Protein_1114 | IS3 family transposase ISLad1 | Transposase |
| AD871_RS06080 () | 1143830..1145431 | - | 1602 | WP_045177795.1 | IS66 family transposase ISSfl3 | Transposase |
| AD871_RS29970 () | 1145428..1145607 | - | 180 | Protein_1116 | IS66 family insertion sequence element accessory protein TnpB | - |
| AD871_RS28555 () | 1145663..1146872 | + | 1210 | Protein_1117 | IS3 family transposase IS629 | Transposase |
| AD871_RS06105 () | 1146917..1147087 | - | 171 | Protein_1118 | IS66 family transposase ISSfl3 | Transposase |
| AD871_RS06110 () | 1147084..1147758 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| AD871_RS06115 () | 1147843..1148127 | + | 285 | Protein_1120 | hypothetical protein | - |
| AD871_RS06120 () | 1148299..1148628 | + | 330 | WP_000450409.1 | DUF496 family protein | - |
| AD871_RS06125 () | 1148729..1148863 | - | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| AD871_RS06130 () | 1148965..1149111 | + | 147 | Protein_1123 | transposase domain-containing protein | - |
| AD871_RS28560 () | 1149489..1150698 | - | 1210 | Protein_1124 | IS3 family transposase IS629 | Transposase |
| AD871_RS06155 () | 1150941..1152097 | + | 1157 | WP_094081529.1 | IS3 family transposase IS600 | Transposase |
| AD871_RS06160 () | 1152109..1152618 | + | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| AD871_RS06165 () | 1152615..1153358 | + | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| AD871_RS06170 () | 1153370..1154449 | + | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| AD871_RS06175 () | 1154511..1155446 | + | 936 | WP_000986341.1 | L,D-transpeptidase | - |
| AD871_RS06185 () | 1155905..1156822 | + | 918 | WP_001011445.1 | nitrogen assimilation transcriptional regulator NAC | - |
| AD871_RS06190 () | 1156924..1157874 | + | 951 | WP_001010988.1 | HTH-type transcriptional regulator Cbl | - |
| AD871_RS28565 () | 1157992..1159619 | + | 1628 | Protein_1132 | toxic metabolite efflux MATE transporter YeeO | - |
| AD871_RS06220 () | 1160251..1160967 | - | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| AD871_RS06225 () | 1161310..1162764 | - | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| AD871_RS06230 () | 1162866..1163072 | - | 207 | WP_000466572.1 | hypothetical protein | - |
| AD871_RS06235 () | 1163073..1164272 | - | 1200 | Protein_1136 | IS3 family transposase IS600 | Transposase |
| AD871_RS06250 () | 1164358..1165526 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| AD871_RS06255 () | 1165590..1166096 | - | 507 | Protein_1138 | MFS transporter | - |
| AD871_RS06265 () | 1166152..1167320 | + | 1169 | WP_094081534.1 | IS3 family transposase ISLad1 | Transposase |
| AD871_RS06270 () | 1167427..1168689 | - | 1263 | Protein_1140 | Prophage integrase IntA ; Integrase | Integrase |
| AD871_RS06280 () | 1169027..1169824 | - | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| AD871_RS06290 () | 1170035..1171085 | - | 1051 | Protein_1142 | Tyrosine recombinase XerC ; Integrase | Integrase |
| AD871_RS06295 () | 1171085..1171225 | - | 141 | Protein_1143 | DUF4224 domain-containing protein | - |
| AD871_RS06300 () | 1171252..1171668 | + | 417 | WP_005069274.1 | hypothetical protein | - |
| - | 1172250..1172308 | - | 59 | - | - | Antitoxin Detail |
| AD871_RS06310 () | 1172320..1172475 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| AD871_RS06320 () | 1172643..1172921 | + | 279 | WP_011069426.1 | hypothetical protein | - |
| AD871_RS06325 () | 1172923..1173981 | + | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| AD871_RS06330 () | 1173982..1174347 | + | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| AD871_RS06335 () | 1174344..1175032 | + | 689 | Protein_1149 | bacteriophage antitermination protein Q | - |
| AD871_RS06360 () | 1175828..1176043 | + | 216 | WP_000839572.1 | class II holin family protein | - |
| AD871_RS06365 () | 1176142..1176816 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| AD871_RS06370 () | 1176813..1177163 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| AD871_RS06375 () | 1177160..1177657 | + | 498 | Protein_1153 | IS66 family transposase ISSfl3 | Transposase |
| AD871_RS06385 () | 1177713..1178410 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| AD871_RS28570 () | 1178426..1178749 | + | 324 | Protein_1155 | IS66 family transposase ISSfl3 | Transposase |
| AD871_RS06400 () | 1178815..1179971 | + | 1157 | WP_094081529.1 | IS3 family transposase IS600 | Transposase |
| AD871_RS06405 () | 1179996..1180355 | + | 360 | Protein_1157 | hypothetical protein | - |
| AD871_RS06410 () | 1180365..1180526 | + | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| AD871_RS06415 () | 1180523..1182019 | + | 1497 | WP_000155743.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| AD871_RS06420 () | 1182019..1182375 | + | 357 | WP_001062338.1 | phage tail tube protein | - |
| AD871_RS06425 () | 1182375..1182710 | + | 336 | WP_001251340.1 | phage tail assembly protein | - |
| AD871_RS06430 () | 1182795..1184744 | + | 1950 | WP_000785377.1 | phage tail tape measure protein | - |
| AD871_RS28260 () | 1184812..1185294 | + | 483 | WP_000594909.1 | hypothetical protein | - |
| AD871_RS06450 () | 1186142..1186999 | + | 858 | Protein_1165 | IS3 family transposase ISSd1 | Transposase |
| AD871_RS06455 () | 1187040..1187519 | + | 480 | Protein_1166 | DUF4376 domain-containing protein | - |
| AD871_RS06465 () | 1187699..1189342 | - | 1644 | WP_014532281.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| AD871_RS06470 () | 1189658..1190326 | - | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| AD871_RS06475 () | 1190383..1190652 | + | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| AD871_RS06485 () | 1191730..1192380 | - | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| AD871_RS06490 () | 1192638..1193273 | - | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| AD871_RS06495 () | 1193274..1194278 | - | 1005 | Protein_1172 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| AD871_RS06500 () | 1194387..1194800 | - | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| AD871_RS06505 () | 1194933..1195604 | + | 672 | WP_001347103.1 | putative transcriptional regulatory protein YedW | VF |
| AD871_RS06510 () | 1195604..1196962 | + | 1359 | WP_000826714.1 | two-component system sensor histidine kinase HprS | - |
| AD871_RS06515 () | 1197070..1197921 | - | 852 | WP_000218218.1 | protein deglycase HchA | - |
| AD871_RS06530 () | 1199292..1199462 | - | 171 | Protein_1178 | porin | - |
| AD871_RS06540 () | 1199565..1200793 | + | 1229 | WP_111778310.1 | IS3 family transposase IS2 | Transposase |
| AD871_RS06545 () | 1200805..1201515 | - | 711 | Protein_1180 | porin | - |
| AD871_RS06555 () | 1201632..1202779 | + | 1148 | WP_094081536.1 | IS3 family transposase ISEhe3 | Transposase |
| AD871_RS06560 () | 1202780..1203037 | + | 258 | WP_032155863.1 | cell division protein DrpB | - |
| AD871_RS06565 () | 1203116..1203617 | + | 502 | Protein_1183 | HD domain-containing protein | - |
| AD871_RS06570 () | 1203684..1205102 | + | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| AD871_RS06575 () | 1205083..1205553 | + | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| AD871_RS06580 () | 1205542..1206462 | - | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| AD871_RS06585 () | 1206635..1207552 | + | 918 | WP_061456167.1 | DUF808 domain-containing protein | - |
| AD871_RS06590 () | 1207631..1207813 | + | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| AD871_RS06600 () | 1207984..1209678 | + | 1695 | Protein_1189 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|