MGE detailed information
MGE type: Prophage MGE length: 56754 bp
Accession: NZ_CP012137 Location: 2093218..2149971 Organism: Shigella flexneri 2a strain 981 Replicon: chromosome
Accession: NZ_CP012137 Location: 2093218..2149971 Organism: Shigella flexneri 2a strain 981 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AD867_RS11550 () | 2088266..2088937 | - | 672 | WP_001347103.1 | response regulator transcription factor HprR | - |
| AD867_RS11555 () | 2089070..2089483 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| AD867_RS11560 () | 2089592..2090596 | + | 1005 | Protein_2122 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| AD867_RS11565 () | 2090597..2091232 | + | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| AD867_RS11570 () | 2091490..2092140 | + | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| AD867_RS11580 () | 2093218..2093487 | - | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| AD867_RS11585 () | 2093544..2094212 | + | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| AD867_RS11590 () | 2094528..2096171 | + | 1644 | WP_014532281.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| AD867_RS11600 () | 2096351..2096830 | - | 480 | Protein_2128 | DUF4376 domain-containing protein | - |
| AD867_RS11605 () | 2096871..2097728 | - | 858 | Protein_2129 | IS3 family transposase IS600 | Transposase |
| AD867_RS11610 () | 2097786..2098483 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| AD867_RS26445 () | 2098576..2099058 | - | 483 | WP_000594909.1 | hypothetical protein | - |
| AD867_RS11620 () | 2099126..2101075 | - | 1950 | WP_000785377.1 | phage tail tape measure protein | - |
| AD867_RS11625 () | 2101160..2101495 | - | 336 | WP_001251340.1 | phage tail assembly protein | - |
| AD867_RS11630 () | 2101495..2101851 | - | 357 | WP_001062338.1 | phage tail tube protein | - |
| AD867_RS11635 () | 2101851..2103347 | - | 1497 | WP_000155743.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| AD867_RS11640 () | 2103344..2103505 | - | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| AD867_RS11645 () | 2103515..2103874 | - | 360 | Protein_2137 | hypothetical protein | - |
| AD867_RS27825 () | 2105121..2105444 | - | 324 | Protein_2139 | IS66 family transposase ISSfl3 | Transposase |
| AD867_RS11670 () | 2106213..2106710 | - | 498 | Protein_2141 | IS66 family transposase ISSfl3 | Transposase |
| AD867_RS11675 () | 2106707..2107057 | - | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| AD867_RS11680 () | 2107054..2107728 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| AD867_RS11685 () | 2107827..2108042 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| AD867_RS11710 () | 2108838..2109526 | - | 689 | Protein_2145 | bacteriophage antitermination protein Q | - |
| AD867_RS11715 () | 2109523..2109888 | - | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| AD867_RS11720 () | 2109889..2110947 | - | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| AD867_RS27835 () | 2110949..2111227 | - | 279 | WP_011069426.1 | hypothetical protein | - |
| AD867_RS11730 () | 2111395..2111550 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 2111562..2111620 | + | 59 | - | - | Antitoxin Detail |
| AD867_RS11740 () | 2112201..2112617 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| AD867_RS11745 () | 2112644..2112784 | + | 141 | Protein_2151 | DUF4224 domain-containing protein | - |
| AD867_RS11750 () | 2112784..2113834 | + | 1051 | Protein_2152 | Tyrosine recombinase XerC ; Integrase | Integrase |
| AD867_RS11760 () | 2114045..2114842 | + | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| AD867_RS11770 () | 2115180..2116442 | + | 1263 | Protein_2154 | Prophage integrase IntA ; Integrase | Integrase |
| AD867_RS11785 () | 2117773..2118279 | + | 507 | Protein_2156 | MFS transporter | - |
| AD867_RS27850 () | 2119597..2120796 | + | 1200 | Protein_2158 | IS3 family transposase IS600 | Transposase |
| AD867_RS11810 () | 2120797..2121003 | + | 207 | WP_000466572.1 | hypothetical protein | - |
| AD867_RS11815 () | 2121105..2122559 | + | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| AD867_RS11820 () | 2122902..2123618 | + | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| AD867_RS30170 () | 2124250..2125877 | - | 1628 | Protein_2162 | toxic metabolite efflux MATE transporter YeeO | - |
| AD867_RS11850 () | 2125995..2126945 | - | 951 | WP_001010988.1 | HTH-type transcriptional regulator Cbl | - |
| AD867_RS11855 () | 2127047..2127964 | - | 918 | WP_001011445.1 | nitrogen assimilation transcriptional regulator NAC | - |
| AD867_RS11865 () | 2128423..2129358 | - | 936 | WP_000986341.1 | L,D-transpeptidase | - |
| AD867_RS11870 () | 2129420..2130499 | - | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| AD867_RS11875 () | 2130511..2131254 | - | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| AD867_RS11880 () | 2131251..2131760 | - | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| AD867_RS27870 () | 2133171..2134380 | + | 1210 | Protein_2170 | IS3 family transposase IS629 | Transposase |
| AD867_RS11910 () | 2134758..2134904 | - | 147 | Protein_2171 | transposase domain-containing protein | - |
| AD867_RS11915 () | 2135006..2135140 | + | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| AD867_RS11920 () | 2135241..2135570 | - | 330 | WP_000450409.1 | DUF496 family protein | - |
| AD867_RS11925 () | 2135742..2136026 | - | 285 | Protein_2174 | hypothetical protein | - |
| AD867_RS11930 () | 2136111..2136785 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| AD867_RS11935 () | 2136782..2136952 | + | 171 | Protein_2176 | IS66 family transposase ISSfl3 | Transposase |
| AD867_RS27875 () | 2136997..2138205 | - | 1209 | Protein_2177 | IS3 family transposase IS629 | Transposase |
| AD867_RS11955 () | 2138261..2138440 | + | 180 | Protein_2178 | IS66 family insertion sequence element accessory protein TnpB | - |
| AD867_RS27880 () | 2138437..2140037 | + | 1601 | Protein_2179 | IS66 family transposase ISSfl3 | Transposase |
| AD867_RS11970 () | 2140071..2140457 | + | 387 | Protein_2180 | IS3 family transposase ISLad1 | Transposase |
| AD867_RS11975 () | 2140509..2140862 | - | 354 | Protein_2181 | hypothetical protein ; Integrase | Integrase |
| AD867_RS11980 () | 2140892..2141308 | - | 417 | Protein_2182 | IS66 family transposase ISSfl3 | Transposase |
| AD867_RS27890 () | 2142573..2142860 | - | 288 | Protein_2184 | transposase | - |
| AD867_RS12005 () | 2144191..2145096 | - | 906 | Protein_2186 | IS66 family transposase ISSfl3 | Transposase |
| AD867_RS12010 () | 2145093..2145443 | - | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| AD867_RS12015 () | 2145440..2146114 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| AD867_RS12020 () | 2146196..2147032 | - | 837 | Protein_2189 | Prophage integrase IntA ; Integrase | Integrase |
| AD867_RS12025 () | 2147214..2148638 | + | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| AD867_RS12030 () | 2148681..2148908 | - | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| AD867_RS12035 () | 2148922..2149980 | - | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| AD867_RS12040 () | 2150159..2151517 | - | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| AD867_RS30195 () | 2151507..2151569 | - | 63 | WP_097433929.1 | membrane protein YoeI | - |
| AD867_RS12045 () | 2151730..2152713 | - | 984 | WP_000803326.1 | LysR substrate-binding domain-containing protein | - |
| AD867_RS12050 () | 2152759..2153583 | - | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| AD867_RS12055 () | 2153666..2153920 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| AD867_RS12065 () | 2154673..2154945 | - | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|