MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 104113 bp
Accession: NZ_CP011770 Location: 3095362..3199474 Organism: Croceicoccus naphthovorans strain PQ-2 Replicon: chromosome
Accession: NZ_CP011770 Location: 3095362..3199474 Organism: Croceicoccus naphthovorans strain PQ-2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB433_RS15275 () | 3093329..3093580 | + | 252 | WP_047824253.1 | hypothetical protein | - |
| AB433_RS15280 () | 3093750..3094724 | - | 975 | WP_047824255.1 | serine hydrolase | - |
| AB433_RS20875 () | 3094914..3095072 | - | 159 | WP_169749368.1 | hypothetical protein | - |
| AB433_RS15290 () | 3095541..3096680 | + | 1140 | WP_047822202.1 | Prophage integrase IntS ; Integrase | Integrase |
| AB433_RS15295 () | 3096698..3098029 | - | 1332 | WP_169749369.1 | hypothetical protein | - |
| AB433_RS15300 () | 3098158..3098346 | - | 189 | WP_047822206.1 | helix-turn-helix domain-containing protein | - |
| AB433_RS15305 () | 3098343..3098549 | - | 207 | WP_047822208.1 | AlpA family transcriptional regulator | - |
| AB433_RS15310 () | 3098959..3099747 | + | 789 | WP_082134973.1 | type IV toxin-antitoxin system AbiEi family antitoxin | - |
| AB433_RS15315 () | 3099751..3100674 | + | 924 | WP_047822210.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| AB433_RS15320 () | 3100671..3101420 | + | 750 | WP_047822212.1 | hypothetical protein | - |
| AB433_RS20650 () | 3101459..3102088 | + | 630 | WP_156170852.1 | hypothetical protein | - |
| AB433_RS15330 () | 3102078..3104324 | - | 2247 | WP_047822214.1 | DUF262 domain-containing protein | - |
| AB433_RS15335 () | 3104382..3105401 | - | 1020 | WP_156170853.1 | hypothetical protein | - |
| AB433_RS15340 () | 3105442..3109545 | - | 4104 | WP_047822218.1 | restriction endonuclease | - |
| AB433_RS15345 () | 3109589..3109834 | - | 246 | WP_047822220.1 | conjugal transfer protein TraD | - |
| AB433_RS15350 () | 3109857..3110162 | - | 306 | WP_047822222.1 | conjugal transfer protein TraD | - |
| AB433_RS15355 () | 3110336..3113221 | + | 2886 | WP_047822224.1 | Ti-type conjugative transfer relaxase TraA | - |
| AB433_RS15360 () | 3113232..3114005 | + | 774 | WP_053059205.1 | hypothetical protein | - |
| AB433_RS15365 () | 3114385..3115755 | + | 1371 | WP_047822226.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| AB433_RS15370 () | 3115931..3116839 | + | 909 | WP_047824265.1 | hypothetical protein | - |
| AB433_RS15375 () | 3116836..3117081 | + | 246 | WP_047822227.1 | hypothetical protein | - |
| AB433_RS15380 () | 3117078..3118844 | + | 1767 | WP_047822229.1 | DUF2326 domain-containing protein | - |
| AB433_RS15385 () | 3118877..3119404 | - | 528 | WP_047822230.1 | MucR family transcriptional regulator | - |
| AB433_RS15390 () | 3119428..3119703 | - | 276 | WP_047822233.1 | HU family DNA-binding protein | - |
| AB433_RS15400 () | 3120213..3120692 | - | 480 | WP_047822236.1 | hypothetical protein | - |
| AB433_RS15405 () | 3120685..3120915 | - | 231 | WP_047822238.1 | hypothetical protein | - |
| AB433_RS15410 () | 3120931..3121563 | - | 633 | WP_053059206.1 | OmpH family outer membrane protein | - |
| AB433_RS15415 () | 3121560..3122408 | - | 849 | WP_047822242.1 | SapC family protein | - |
| AB433_RS15420 () | 3122465..3134860 | - | 12396 | WP_047822244.1 | Heme/hemopexin-binding protein | VF |
| AB433_RS20880 () | 3134857..3135054 | - | 198 | WP_047822246.1 | hypothetical protein | - |
| AB433_RS19615 () | 3135051..3135698 | - | 648 | WP_169749370.1 | hypothetical protein | - |
| AB433_RS15435 () | 3136022..3137773 | - | 1752 | WP_082135068.1 | putative porin | - |
| AB433_RS15440 () | 3137861..3138568 | - | 708 | WP_047822249.1 | hypothetical protein | - |
| AB433_RS20655 () | 3138558..3138884 | - | 327 | WP_156170854.1 | hypothetical protein | - |
| AB433_RS15450 () | 3138903..3139319 | - | 417 | WP_053059208.1 | biopolymer transporter ExbD | - |
| AB433_RS15455 () | 3139347..3141083 | - | 1737 | WP_053059209.1 | DUF2341 domain-containing protein | - |
| AB433_RS15460 () | 3141085..3142752 | - | 1668 | WP_082134974.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| AB433_RS19620 () | 3143047..3144003 | - | 957 | WP_169749371.1 | helix-turn-helix domain-containing protein | - |
| AB433_RS19625 () | 3144170..3144844 | + | 675 | WP_053059211.1 | energy transducer TonB | - |
| AB433_RS15475 () | 3144874..3145629 | + | 756 | WP_169749372.1 | TonB C-terminal domain-containing protein | - |
| AB433_RS15480 () | 3145626..3146168 | + | 543 | WP_047822256.1 | sigma-70 family RNA polymerase sigma factor | - |
| AB433_RS15485 () | 3146246..3147181 | + | 936 | WP_169749373.1 | DUF4880 domain-containing protein | - |
| AB433_RS15490 () | 3147338..3148237 | + | 900 | WP_047822261.1 | HTH-type transcriptional regulator BenM | VF |
| AB433_RS15495 () | 3148297..3148602 | + | 306 | WP_047822263.1 | hypothetical protein | - |
| AB433_RS15500 () | 3148619..3148840 | - | 222 | WP_047822265.1 | DUF2274 domain-containing protein | - |
| AB433_RS15505 () | 3148837..3150195 | - | 1359 | WP_082134976.1 | Type IV secretion system protein virB10 | VF |
| AB433_RS15510 () | 3150192..3151232 | - | 1041 | WP_047822267.1 | P-type conjugative transfer protein TrbG | - |
| AB433_RS15515 () | 3151229..3151912 | - | 684 | WP_047822268.1 | conjugal transfer protein TrbF | - |
| AB433_RS15520 () | 3151919..3153307 | - | 1389 | WP_047822270.1 | P-type conjugative transfer protein TrbL | - |
| AB433_RS15525 () | 3153304..3153555 | - | 252 | WP_047822273.1 | putative entry exclusion protein TrbK-alt | - |
| AB433_RS15530 () | 3153583..3154305 | - | 723 | WP_047822275.1 | P-type conjugative transfer protein TrbJ | - |
| AB433_RS15535 () | 3154302..3156752 | - | 2451 | WP_047822277.1 | conjugal transfer protein TrbE | - |
| AB433_RS15540 () | 3156767..3157039 | - | 273 | WP_047822280.1 | VirB3 family type IV secretion system protein | - |
| AB433_RS15545 () | 3157039..3157371 | - | 333 | WP_047822282.1 | TrbC/VirB2 family protein | - |
| AB433_RS15550 () | 3157368..3158390 | - | 1023 | WP_053059213.1 | Type IV secretion system protein VirB11 | VF |
| AB433_RS15555 () | 3158535..3158972 | - | 438 | WP_047824279.1 | CopG domain-containing protein | - |
| AB433_RS15560 () | 3158989..3160989 | - | 2001 | WP_047822286.1 | Conjugal transfer protein TraG | VF |
| AB433_RS15565 () | 3161172..3161543 | - | 372 | WP_047822288.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| AB433_RS15570 () | 3161540..3161737 | - | 198 | WP_047822290.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| AB433_RS15575 () | 3161839..3163590 | - | 1752 | WP_047822292.1 | VirD2 family relaxase/mobilization nuclease | - |
| AB433_RS15580 () | 3164111..3165184 | - | 1074 | WP_047822294.1 | IS110 family transposase ISGdi15 | Transposase |
| AB433_RS15585 () | 3165375..3166103 | - | 729 | WP_053059295.1 | lytic transglycosylase domain-containing protein | - |
| AB433_RS15590 () | 3166108..3166443 | - | 336 | WP_039577893.1 | DUF736 domain-containing protein | - |
| AB433_RS15595 () | 3166498..3166995 | - | 498 | WP_047822298.1 | S26 family signal peptidase | - |
| AB433_RS15600 () | 3166992..3167468 | - | 477 | WP_047822300.1 | DUF2840 domain-containing protein | - |
| AB433_RS15605 () | 3167465..3167725 | - | 261 | WP_047822302.1 | hypothetical protein | - |
| AB433_RS15610 () | 3167722..3168360 | - | 639 | WP_047822304.1 | Chromosome-partitioning ATPase Soj | VF |
| AB433_RS15615 () | 3168539..3169411 | - | 873 | WP_047822306.1 | replication initiator protein A | - |
| AB433_RS15620 () | 3169415..3169678 | - | 264 | WP_047822308.1 | helix-turn-helix domain-containing protein | - |
| AB433_RS15625 () | 3169810..3170319 | - | 510 | WP_047824283.1 | DUF2285 domain-containing protein | - |
| AB433_RS15630 () | 3170752..3171015 | - | 264 | WP_047822310.1 | DUF2285 domain-containing protein | - |
| AB433_RS15635 () | 3171202..3171414 | - | 213 | WP_039577869.1 | helix-turn-helix transcriptional regulator | - |
| AB433_RS20885 () | 3171553..3171726 | - | 174 | WP_167702736.1 | hypothetical protein | - |
| AB433_RS15640 () | 3172165..3172578 | - | 414 | WP_039581728.1 | single-stranded DNA-binding protein | - |
| AB433_RS15645 () | 3173268..3173906 | - | 639 | WP_039577866.1 | plasmid pRiA4b ORF-3 family protein | - |
| AB433_RS15650 () | 3173913..3174215 | - | 303 | WP_039577865.1 | HigA family addiction module antidote protein | - |
| AB433_RS15655 () | 3174215..3174496 | - | 282 | WP_039577863.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| AB433_RS15660 () | 3174580..3175518 | - | 939 | WP_047824285.1 | DUF2493 domain-containing protein | - |
| AB433_RS15665 () | 3175881..3176933 | - | 1053 | WP_047822313.1 | toprim domain-containing protein | - |
| AB433_RS15670 () | 3176948..3181282 | - | 4335 | WP_053059215.1 | strawberry notch family protein | - |
| AB433_RS15675 () | 3181487..3181729 | + | 243 | WP_039577855.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| AB433_RS15680 () | 3181729..3182151 | + | 423 | WP_047822315.1 | type II toxin-antitoxin system VapC family toxin | - |
| AB433_RS15685 () | 3182226..3183032 | - | 807 | WP_047822320.1 | hypothetical protein | - |
| AB433_RS15690 () | 3183029..3183547 | - | 519 | WP_053059216.1 | hypothetical protein | - |
| AB433_RS15695 () | 3183679..3183873 | - | 195 | WP_039577847.1 | hypothetical protein | - |
| AB433_RS15700 () | 3183960..3184715 | - | 756 | WP_047822322.1 | hypothetical protein | - |
| AB433_RS15705 () | 3184785..3185159 | - | 375 | WP_047822323.1 | hypothetical protein | - |
| AB433_RS15710 () | 3185170..3185640 | - | 471 | WP_047822325.1 | hypothetical protein | - |
| AB433_RS15715 () | 3185756..3187906 | - | 2151 | WP_047822327.1 | ParB N-terminal domain-containing protein | - |
| AB433_RS15720 () | 3188134..3188517 | - | 384 | WP_047822329.1 | hypothetical protein | - |
| AB433_RS20145 () | 3188514..3189755 | - | 1242 | Protein_3099 | hypothetical protein | - |
| AB433_RS15735 () | 3189759..3190124 | - | 366 | WP_047822331.1 | DUF2958 domain-containing protein | - |
| AB433_RS15740 () | 3190121..3191071 | - | 951 | WP_047822333.1 | DUF1738 domain-containing protein | - |
| AB433_RS15745 () | 3191316..3191981 | + | 666 | WP_047822335.1 | SOS response-associated peptidase | - |
| AB433_RS15750 () | 3192080..3192781 | + | 702 | WP_156170855.1 | hypothetical protein | - |
| AB433_RS15755 () | 3192796..3193569 | - | 774 | WP_047822339.1 | hypothetical protein | - |
| AB433_RS15760 () | 3193748..3194500 | + | 753 | WP_047822341.1 | ImuA family protein | - |
| AB433_RS15765 () | 3194415..3195938 | + | 1524 | WP_047822343.1 | DNA polymerase Y family protein | - |
| AB433_RS15770 () | 3195935..3199186 | + | 3252 | WP_047822345.1 | error-prone DNA polymerase | - |
| AB433_RS15775 () | 3199625..3199903 | - | 279 | WP_047822347.1 | hypothetical protein | - |
| AB433_RS20150 () | 3199903..3200091 | - | 189 | WP_082135070.1 | hypothetical protein | - |
| AB433_RS15785 () | 3200538..3201230 | - | 693 | WP_047822351.1 | HNH endonuclease | - |
| AB433_RS15790 () | 3201271..3202038 | - | 768 | WP_047822353.1 | hypothetical protein | - |
| AB433_RS15795 () | 3202150..3203124 | - | 975 | WP_047822355.1 | PD-(D/E)XK motif protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|