MGE detailed information
MGE type: Conjugative plasmid MGE length: 67545 bp
Accession: NZ_CP011496 Location: 1..67545 Organism: Escherichia coli strain NCM3722 isolate K-12 Replicon: plasmid F
Accession: NZ_CP011496 Location: 1..67545 Organism: Escherichia coli strain NCM3722 isolate K-12 Replicon: plasmid F
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA953_RS23235 () | 158..445 | + | 288 | WP_000107542.1 | hypothetical protein | - |
| AA953_RS23240 () | 564..1385 | + | 822 | WP_001234417.1 | DUF945 domain-containing protein | - |
| AA953_RS23245 () | 1681..2271 | - | 591 | WP_001375132.1 | hypothetical protein | VF |
| AA953_RS23250 () | 2604..2987 | + | 384 | WP_001151527.1 | relaxosome protein TraM | - |
| AA953_RS23255 () | 3174..3863 | + | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| AA953_RS23260 () | 3962..4357 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| AA953_RS23265 () | 4390..4755 | + | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| AA953_RS23270 () | 4770..5081 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| AA953_RS23275 () | 5103..5669 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| AA953_RS23280 () | 5680..6384 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| AA953_RS23285 () | 6384..7811 | + | 1428 | WP_000146685.1 | conjugal transfer protein TraB | - |
| AA953_RS23290 () | 7801..8391 | + | 591 | WP_000002792.1 | conjugal transfer protein TraP | - |
| AA953_RS23295 () | 8345..8575 | + | 231 | WP_071587746.1 | conjugal transfer protein TrbD | - |
| AA953_RS23300 () | 8587..8838 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| AA953_RS23305 () | 8835..9350 | + | 516 | WP_000809843.1 | type IV conjugative transfer system lipoprotein TraV | - |
| AA953_RS25570 () | 9485..9706 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| AA953_RS23315 () | 9866..12493 | + | 2628 | WP_001064243.1 | type IV secretion system protein TraC | - |
| AA953_RS23320 () | 12490..12876 | + | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| AA953_RS23325 () | 12873..13505 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| AA953_RS23330 () | 13502..14494 | + | 993 | WP_000830185.1 | conjugal transfer pilus assembly protein TraU | - |
| AA953_RS23335 () | 14503..15141 | + | 639 | WP_000777688.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| AA953_RS23340 () | 15138..16946 | + | 1809 | WP_000821835.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| AA953_RS23345 () | 16973..17230 | + | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| AA953_RS23350 () | 17223..17966 | + | 744 | WP_001030367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| AA953_RS23355 () | 17982..18329 | + | 348 | WP_001287913.1 | conjugal transfer protein TrbA | - |
| AA953_RS23360 () | 18331..18645 | - | 315 | WP_000415566.1 | protein ArtA | - |
| AA953_RS23365 () | 18726..19010 | + | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| AA953_RS23370 () | 18997..19542 | + | 546 | WP_000059850.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| AA953_RS23375 () | 19472..19813 | + | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| AA953_RS23380 () | 19767..20180 | + | 414 | WP_001331260.1 | F-type conjugal transfer protein TrbF | - |
| AA953_RS23385 () | 20180..21553 | + | 1374 | WP_021553026.1 | conjugal transfer protein TraH | - |
| AA953_RS23390 () | 21550..24366 | + | 2817 | WP_001007055.1 | conjugal transfer mating pair stabilization protein TraG | - |
| AA953_RS25575 () | 24399..24920 | + | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| AA953_RS23400 () | 24945..25676 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| AA953_RS23405 () | 25929..28082 | + | 2154 | WP_000009350.1 | type IV conjugative transfer system coupling protein TraD | - |
| AA953_RS23410 () | 28091..28489 | - | 399 | WP_000911324.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| AA953_RS23415 () | 28489..28716 | - | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| AA953_RS23420 () | 28798..34068 | + | 5271 | WP_000987005.1 | Multifunctional conjugation protein TraI | Relaxase |
| AA953_RS23425 () | 34088..34834 | + | 747 | WP_000205776.1 | conjugal transfer pilus acetylase TraX | - |
| AA953_RS23430 () | 34889..35449 | + | 561 | WP_000139310.1 | fertility inhibition protein FinO | - |
| AA953_RS23435 () | 35584..35772 | + | 189 | WP_001345829.1 | hypothetical protein | - |
| AA953_RS26885 () | 35970..36056 | + | 87 | Protein_41 | endonuclease | - |
| AA953_RS23445 () | 36237..36548 | - | 312 | WP_000802277.1 | hypothetical protein | - |
| - () | 36844..36905 | - | 62 | NuclAT_1 | - | - |
| - () | 36844..36905 | - | 62 | NuclAT_1 | - | - |
| - () | 36844..36905 | - | 62 | NuclAT_1 | - | - |
| - () | 36844..36905 | - | 62 | NuclAT_1 | - | - |
| AA953_RS23450 () | 36892..37098 | + | 207 | WP_001362723.1 | type I toxin-antitoxin system Hok family toxin | - |
| AA953_RS23455 () | 37382..37639 | + | 258 | WP_000083834.1 | replication regulatory protein RepA | - |
| AA953_RS23460 () | 37873..37947 | + | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| AA953_RS23465 () | 37940..38422 | + | 483 | WP_001443034.1 | hypothetical protein | - |
| AA953_RS23470 () | 38415..39272 | + | 858 | WP_000774301.1 | incFII family plasmid replication initiator RepA | - |
| AA953_RS23475 () | 40206..41090 | + | 885 | WP_001345827.1 | hypothetical protein | - |
| AA953_RS25595 () | 41086..41255 | + | 170 | Protein_49 | resolvase | - |
| AA953_RS26890 () | 41510..41656 | + | 147 | Protein_50 | 3'-5' exonuclease | - |
| AA953_RS23485 () | 41848..44523 | - | 2676 | WP_000233113.1 | hypothetical protein | - |
| AA953_RS23490 () | 44750..45040 | + | 291 | WP_000538310.1 | hypothetical protein | - |
| AA953_RS23495 () | 45030..45929 | + | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| AA953_RS23500 () | 45979..48204 | - | 2226 | WP_000698737.1 | phage T7 exclusion protein | - |
| AA953_RS23505 () | 48206..49294 | - | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| AA953_RS23510 () | 49874..50092 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| AA953_RS23515 () | 50094..50399 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| AA953_RS23520 () | 50400..51206 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| AA953_RS23525 () | 51980..52735 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| AA953_RS23530 () | 53323..54489 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| AA953_RS23535 () | 54489..55460 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| AA953_RS26895 () | 56413..57314 | + | 902 | Protein_62 | DUF1281 domain-containing protein | - |
| AA953_RS26180 () | 57318..57623 | + | 306 | WP_010892536.1 | hypothetical protein | - |
| AA953_RS23550 () | 57700..58383 | + | 684 | WP_000085939.1 | DNA methylase | - |
| AA953_RS23555 () | 58384..58605 | + | 222 | WP_001104904.1 | hypothetical protein | - |
| AA953_RS23560 () | 58499..59053 | + | 555 | WP_001358893.1 | DUF1380 family protein | - |
| AA953_RS26900 () | 59099..59875 | + | 777 | WP_001005032.1 | hypothetical protein | - |
| AA953_RS23570 () | 60412..60714 | + | 303 | WP_072095193.1 | antirestriction protein | - |
| AA953_RS23575 () | 60761..61183 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| AA953_RS23580 () | 61180..61371 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| AA953_RS23590 () | 62177..62716 | + | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| AA953_RS23595 () | 62773..63006 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| AA953_RS23600 () | 63072..65030 | + | 1959 | WP_000117173.1 | ParB/RepB/Spo0J family partition protein | - |
| AA953_RS23605 () | 65085..65519 | + | 435 | WP_000845928.1 | conjugation system SOS inhibitor PsiB | - |
| AA953_RS23610 () | 65516..66235 | + | 720 | WP_000116348.1 | plasmid SOS inhibition protein A | - |
| - () | 66247..66445 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 66247..66445 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 66247..66445 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 66247..66445 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| AA953_RS23620 () | 66510..66668 | + | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| AA953_RS26905 () | 66906..67265 | - | 360 | Protein_77 | hypothetical protein | - |
| AA953_RS26910 () | 67335..67541 | + | 207 | WP_000547965.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|