NZ_CP0114291..156323

MGE detailed information

MGE type: Non-Mobilizable plasmid        MGE length: 156323 bp
Accession: NZ_CP011429        Location: 1..156323         Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain YU39 isolate YUHS 05-78       Replicon: plasmid pYU39_IncA/C


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SE14_RS23790 () 323..862 + 540 WP_001447712.1 hypothetical protein -
SE14_RS23795 () 867..1154 + 288 WP_000127321.1 hypothetical protein -
SE14_RS23800 () 1139..2239 + 1101 WP_000350011.1 plasmid replication protein -
SE14_RS23810 () 3276..3710 - 435 WP_000883925.1 hypothetical protein -
SE14_RS23815 () 3728..4843 - 1116 WP_000946102.1 phosphoadenosine phosphosulfate reductase family protein -
SE14_RS23820 () 5112..5720 + 609 WP_000849071.1 hypothetical protein -
SE14_RS23825 () 5725..6246 + 522 WP_000393785.1 hypothetical protein -
SE14_RS23830 () 6249..6770 + 522 WP_000805800.1 hypothetical protein -
SE14_RS23835 () 6867..7340 + 474 WP_000057877.1 hypothetical protein -
SE14_RS23840 () 7351..7644 + 294 WP_001370730.1 hypothetical protein -
SE14_RS23845 () 7649..8503 + 855 WP_000539392.1 hypothetical protein -
SE14_RS23850 () 8503..9462 + 960 WP_000829616.1 S49 family peptidase -
SE14_RS23855 () 9478..10338 + 861 WP_000139698.1 DsbA family protein -
SE14_RS23860 () 10372..10800 + 429 WP_000591074.1 hypothetical protein -
SE14_RS23865 () 10857..11216 + 360 WP_000422768.1 hypothetical protein -
SE14_RS23870 () 11216..11662 + 447 WP_000919345.1 Fe3+-siderophore ABC transporter permease -
SE14_RS23875 () 11659..12177 + 519 WP_000210756.1 nitrite reductase -
SE14_RS23880 () 12177..12407 + 231 WP_000972663.1 hypothetical protein -
SE14_RS23885 () 12394..13251 + 858 WP_001167032.1 hypothetical protein -
SE14_RS23895 () 13482..14009 + 528 WP_001236377.1 thermonuclease family protein -
SE14_RS23900 () 14067..14339 + 273 WP_001043047.1 HU family DNA-binding protein -
SE14_RS23905 () 14427..14720 + 294 WP_001239997.1 chromosome segregation protein ParM -
SE14_RS23910 () 14747..15049 - 303 WP_000124640.1 XRE family transcriptional regulator Antitoxin Detail
SE14_RS23915 () 15054..15404 - 351 WP_000270043.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
SE14_RS23920 () 15567..16115 + 549 WP_001061574.1 transcriptional regulator -
SE14_RS27880 () 16456..16650 + 195 WP_000343597.1 hypothetical protein -
SE14_RS27885 () 16661..17032 + 372 WP_000516916.1 hypothetical protein -
SE14_RS23940 () 17025..17495 + 471 WP_001281821.1 hypothetical protein -
SE14_RS23945 () 17510..17845 - 336 WP_000683476.1 hypothetical protein -
SE14_RS23950 () 17942..18430 + 489 WP_001273096.1 DUF1643 domain-containing protein -
SE14_RS23955 () 18433..18930 + 498 WP_000062185.1 hypothetical protein -
SE14_RS23960 () 19145..19849 - 705 WP_001067855.1 IS6-like element IS26 family transposase -
SE14_RS23965 () 19914..20093 - 180 Protein_32 helix-turn-helix transcriptional regulator -
SE14_RS23970 () 20400..21104 + 705 WP_001067855.1 IS6-like element IS26 family transposase -
SE14_RS23975 () 21150..22424 + 1275 Protein_34 IS91-like element ISVsa3 family transposase -
SE14_RS28465 () 22893..23339 + 447 Protein_35 DUF3363 domain-containing protein -
SE14_RS23985 () 23556..24770 + 1215 WP_000214123.1 chloramphenicol/florfenicol efflux MFS transporter FloR -
SE14_RS23990 () 24798..25103 + 306 WP_001255015.1 LysR family transcriptional regulator -
SE14_RS28245 () 25215..25403 + 189 Protein_38 IS91 family transposase -
SE14_RS23995 () 25370..26569 - 1200 WP_000804063.1 tetracycline efflux MFS transporter Tet(A) -
SE14_RS24000 () 26675..27325 + 651 WP_000164043.1 tetracycline resistance transcriptional repressor TetR(A) -
SE14_RS24005 () 27357..27599 - 243 WP_000844627.1 transposase -
SE14_RS24010 () 27905..28741 - 837 WP_000480968.1 aminoglycoside O-phosphotransferase APH(6)-Id -
SE14_RS24015 () 28741..29544 - 804 WP_001082319.1 aminoglycoside O-phosphotransferase APH(3'')-Ib -
SE14_RS24020 () 29605..30420 - 816 WP_001043260.1 sulfonamide-resistant dihydropteroate synthase Sul2 -
SE14_RS24025 () 30727..31038 + 312 WP_000338945.1 hypothetical protein -
SE14_RS24030 () 31212..31997 + 786 WP_001151304.1 ParA family protein -
SE14_RS24035 () 32001..33182 + 1182 WP_001207227.1 ParB/RepB/Spo0J family partition protein -
SE14_RS24040 () 33231..33503 + 273 WP_000703827.1 helix-turn-helix domain-containing protein -
SE14_RS24045 () 33556..34191 - 636 WP_000074431.1 N-6 DNA methylase -
SE14_RS28250 () 34283..34426 - 144 WP_000939033.1 hypothetical protein -
SE14_RS24050 () 34753..35130 + 378 WP_001125904.1 hypothetical protein -
SE14_RS28470 () 35123..35404 + 282 WP_000044823.1 hypothetical protein -
SE14_RS24060 () 35379..36053 + 675 WP_000344149.1 hypothetical protein -
SE14_RS24065 () 36121..36552 + 432 WP_001326170.1 hypothetical protein -
SE14_RS24070 () 36558..36869 + 312 WP_001447539.1 hypothetical protein -
SE14_RS24075 () 36878..37378 + 501 WP_000647188.1 hypothetical protein -
SE14_RS24080 () 37382..38809 + 1428 WP_000936897.1 DNA cytosine methyltransferase -
SE14_RS24085 () 38809..39465 + 657 WP_000268552.1 hypothetical protein -
SE14_RS24090 () 39521..40138 + 618 WP_000464630.1 hypothetical protein -
SE14_RS24100 () 40350..40649 + 300 WP_001326171.1 hypothetical protein -
SE14_RS24105 () 40740..41228 - 489 WP_000467110.1 hypothetical protein -
SE14_RS24110 () 41243..43435 - 2193 WP_000366823.1 DNA topoisomerase 3 -
SE14_RS24115 () 43435..43668 - 234 WP_001191890.1 hypothetical protein -
SE14_RS24120 () 43650..44267 - 618 WP_001249395.1 hypothetical protein -
SE14_RS24125 () 44435..47407 + 2973 WP_001326173.1 TraI domain-containing protein -
SE14_RS24130 () 47404..49269 + 1866 WP_000178857.1 conjugative transfer system coupling protein TraD -
SE14_RS24135 () 49280..49864 + 585 WP_000332868.1 hypothetical protein -
SE14_RS24140 () 49821..50450 + 630 WP_000743449.1 DUF4400 domain-containing protein -
SE14_RS24145 () 50460..50906 + 447 WP_000122507.1 hypothetical protein -
SE14_RS24150 () 50916..51293 + 378 WP_000869297.1 hypothetical protein -
SE14_RS24155 () 51293..51955 + 663 WP_001231464.1 hypothetical protein -
SE14_RS24160 () 52279..52656 + 378 WP_001326174.1 hypothetical protein -
SE14_RS24165 () 52801..53082 + 282 WP_000805625.1 type IV conjugative transfer system protein TraL -
SE14_RS24170 () 53079..53705 + 627 WP_001049717.1 hypothetical protein -
SE14_RS24175 () 53689..54606 + 918 WP_000794249.1 type-F conjugative transfer system secretin TraK -
SE14_RS24180 () 54606..55919 + 1314 WP_024131605.1 conjugal transfer protein TraB -
SE14_RS24185 () 55916..56494 + 579 WP_000793435.1 type IV conjugative transfer system lipoprotein TraV -
SE14_RS24190 () 56498..56890 + 393 WP_000479535.1 hypothetical protein -
SE14_RS24195 () 57175..58437 + 1263 WP_000608644.1 IS1380-like element ISEc9 family transposase -
SE14_RS24200 () 58761..59906 + 1146 WP_000976514.1 class C beta-lactamase CMY-2 -
SE14_RS24205 () 60000..60533 + 534 WP_001221666.1 lipocalin family protein -
SE14_RS24210 () 60530..60847 - 318 WP_000118520.1 quaternary ammonium compound efflux SMR transporter SugE -
SE14_RS24215 () 61575..67061 + 5487 WP_000606835.1 DUF4165 domain-containing protein -
SE14_RS24220 () 67210..67917 + 708 WP_001259346.1 DsbC family protein -
SE14_RS24225 () 67914..70361 + 2448 WP_000637384.1 type IV secretion system protein TraC -
SE14_RS24230 () 70376..70693 + 318 WP_000351984.1 hypothetical protein -
SE14_RS24235 () 70690..71220 + 531 WP_001010740.1 S26 family signal peptidase -
SE14_RS24240 () 71183..72448 + 1266 WP_001447719.1 conjugal transfer protein TraW -
SE14_RS24245 () 72445..73116 + 672 WP_000575345.1 EAL domain-containing protein -
SE14_RS24250 () 73113..74120 + 1008 WP_000983282.1 TraU family protein -
SE14_RS24255 () 74224..77031 + 2808 WP_001447718.1 conjugal transfer mating pair stabilization protein TraN -
SE14_RS24260 () 77070..77930 - 861 WP_000709517.1 hypothetical protein -
SE14_RS24265 () 78053..78694 - 642 WP_000796664.1 hypothetical protein -
SE14_RS24270 () 78988..79308 + 321 WP_000547566.1 hypothetical protein -
SE14_RS24275 () 79612..79797 + 186 WP_001186917.1 hypothetical protein -
SE14_RS24280 () 80017..80985 + 969 WP_000085160.1 CbbQ/NirQ/NorQ C-terminal domain-containing protein -
SE14_RS24285 () 80996..81904 + 909 WP_000739139.1 hypothetical protein -
SE14_RS24290 () 81965..82495 + 531 WP_000987165.1 single-stranded DNA-binding protein -
SE14_RS24295 () 82590..83579 + 990 WP_001282585.1 phage recombination protein Bet -
SE14_RS24300 () 83642..84652 + 1011 WP_000706865.1 YqaJ viral recombinase family protein -
SE14_RS24305 () 84877..85581 - 705 WP_001067858.1 IS6-like element IS26 family transposase -
SE14_RS24310 () 85755..86105 + 351 WP_001132147.1 peptidoglycan DD-metalloendopeptidase family protein -
SE14_RS24315 () 86139..86336 - 198 WP_000843496.1 DUF2933 domain-containing protein -
SE14_RS24320 () 86377..88854 - 2478 WP_001398208.1 Ag(+)-translocating P-type ATPase SilP -
SE14_RS24325 () 88951..89391 - 441 WP_000758221.1 hypothetical protein -
SE14_RS24330 () 89478..92624 - 3147 WP_022630998.1 Cu(+)/Ag(+) efflux RND transporter permease subunit SilA -
SE14_RS24335 () 92635..93927 - 1293 WP_001398209.1 Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB -
SE14_RS24340 () 94041..94394 - 354 WP_001246155.1 cation efflux system protein CusF -
SE14_RS24345 () 94422..95807 - 1386 WP_000475512.1 Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC -
SE14_RS24350 () 95997..96677 + 681 WP_000697969.1 copper/silver response regulator transcription factor SilR -
SE14_RS24355 () 96670..98145 + 1476 WP_022630999.1 copper/silver sensor histidine kinase SilS -
SE14_RS24360 () 98396..98827 + 432 WP_000790483.1 silver-binding protein SilE -
SE14_RS24365 () 98971..99321 + 351 WP_000694953.1 DUF305 domain-containing protein -
SE14_RS24370 () 99709..100617 - 909 Protein_114 HNH endonuclease -
SE14_RS24375 () 101254..102228 + 975 WP_001148756.1 sensor domain-containing diguanylate cyclase -
SE14_RS28255 () 103159..103830 + 672 WP_000796235.1 hypothetical protein -
SE14_RS24385 () 103850..104638 + 789 WP_022631000.1 site-specific integrase -
SE14_RS24390 () 104932..105828 - 897 Protein_118 IS3 family transposase -
SE14_RS24395 () 105838..106989 - 1152 Protein_119 IS30-like element IS30 family transposase -
SE14_RS24400 () 107071..107220 - 150 Protein_120 IS3 family transposase -
SE14_RS24405 () 107367..107648 + 282 WP_000639434.1 hypothetical protein -
SE14_RS27900 () 107749..108447 - 699 Protein_122 IS1 family transposase -
SE14_RS24420 () 108557..109882 + 1326 WP_022631019.1 pyridine nucleotide-disulfide oxidoreductase -
SE14_RS27915 () 110061..110758 + 698 Protein_124 IS1 family transposase -
SE14_RS24435 () 110788..111135 + 348 WP_000612626.1 IS66 family insertion sequence element accessory protein TnpB -
SE14_RS27260 () 111184..112721 + 1538 Protein_126 IS66 family transposase -
SE14_RS28260 () 113887..114585 + 699 Protein_127 IS1 family transposase -
SE14_RS24460 () 114604..115449 + 846 Protein_128 IS3 family transposase -
SE14_RS24465 () 115815..116786 - 972 WP_000817038.1 ParB/RepB/Spo0J family plasmid partition protein -
SE14_RS24470 () 116786..117403 - 618 Protein_130 AAA family ATPase -
SE14_RS24475 () 117467..118171 + 705 WP_001067858.1 IS6-like element IS26 family transposase -
SE14_RS24480 () 118340..118819 + 480 WP_000888203.1 Rrf2 family transcriptional regulator -
SE14_RS24485 () 118889..122041 - 3153 WP_000347934.1 multidrug efflux RND transporter permease subunit OqxB -
SE14_RS24490 () 122065..123240 - 1176 WP_002914189.1 multidrug efflux RND transporter periplasmic adaptor subunit OqxA -
SE14_RS24495 () 123560..124264 + 705 WP_001067858.1 IS6-like element IS26 family transposase -
SE14_RS25745 () 124388..124672 + 285 WP_001376233.1 bleomycin resistance protein -
SE14_RS24500 () 124992..125384 - 393 WP_000084745.1 pyridoxamine 5'-phosphate oxidase family protein -
SE14_RS24505 () 125869..126660 - 792 WP_001206356.1 ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2 -
SE14_RS28265 () 126666..126956 - 291 WP_001336345.1 DUF1010 domain-containing protein -
SE14_RS24510 () 127068..127565 - 498 WP_001083725.1 trimethoprim-resistant dihydrofolate reductase DfrA12 -
SE14_RS24515 () 127710..128723 + 1014 WP_000845054.1 class 1 integron integrase IntI1 -
SE14_RS24520 () 128858..129562 - 705 WP_001067858.1 IS6-like element IS26 family transposase -
SE14_RS28350 () 129640..129735 + 96 WP_162198500.1 hypothetical protein -
SE14_RS24525 () 129856..130230 + 375 WP_000868820.1 hypothetical protein -
SE14_RS24530 () 130345..131070 + 726 WP_000988731.1 hypothetical protein -
SE14_RS24535 () 131203..135456 + 4254 WP_001257735.1 RHS domain-containing protein -
SE14_RS24540 () 135428..135868 + 441 WP_001326394.1 hypothetical protein -
SE14_RS28360 () 136039..136491 + 453 Protein_148 hypothetical protein -
SE14_RS24550 () 136507..137109 - 603 WP_000278322.1 hypothetical protein -
SE14_RS24555 () 137379..137660 + 282 WP_000575657.1 hypothetical protein -
SE14_RS24565 () 137959..138495 + 537 WP_000949433.1 hypothetical protein -
SE14_RS24570 () 138498..139508 + 1011 WP_000543934.1 tyrosine-type recombinase/integrase -
SE14_RS24575 () 139513..140382 + 870 WP_000997323.1 3'-5' exonuclease -
SE14_RS24580 () 140379..140870 + 492 WP_000139717.1 hypothetical protein -
SE14_RS24585 () 141197..142072 + 876 WP_001097010.1 DNA replication terminus site-binding protein -
SE14_RS24590 () 142234..143274 + 1041 WP_000101568.1 DNA-binding protein -
SE14_RS24600 () 143561..145072 + 1512 WP_000811656.1 UvrD-helicase domain-containing protein -
SE14_RS24605 () 145183..146223 + 1041 WP_001326396.1 conjugal transfer protein TraF -
SE14_RS24610 () 146225..147658 + 1434 WP_000256129.1 conjugal transfer protein TraH -
SE14_RS24615 () 147671..151285 + 3615 WP_000534551.1 conjugal transfer protein TraG N-terminal domain-containing protein -
SE14_RS24620 () 151323..151685 - 363 WP_000683483.1 hypothetical protein -
SE14_RS24625 () 152401..152673 + 273 WP_000356489.1 helix-turn-helix domain-containing protein -
SE14_RS24630 () 152673..153206 + 534 WP_000790610.1 transglycosylase SLT domain-containing protein -
SE14_RS24635 () 153217..153825 + 609 Protein_164 transcriptional regulator -
SE14_RS24640 () 153822..154373 + 552 WP_001020646.1 hypothetical protein -
SE14_RS24645 () 154433..154852 - 420 WP_000651490.1 H-NS histone family protein -
SE14_RS24650 () 154854..155147 - 294 WP_000919078.1 hypothetical protein -
SE14_RS24655 () 155164..156147 - 984 WP_000077458.1 ParM/StbA family protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance