MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 156323 bp
Accession: NZ_CP011429 Location: 1..156323 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain YU39 isolate YUHS 05-78 Replicon: plasmid pYU39_IncA/C
Accession: NZ_CP011429 Location: 1..156323 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain YU39 isolate YUHS 05-78 Replicon: plasmid pYU39_IncA/C
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
SE14_RS23790 () | 323..862 | + | 540 | WP_001447712.1 | hypothetical protein | - |
SE14_RS23795 () | 867..1154 | + | 288 | WP_000127321.1 | hypothetical protein | - |
SE14_RS23800 () | 1139..2239 | + | 1101 | WP_000350011.1 | plasmid replication protein | - |
SE14_RS23810 () | 3276..3710 | - | 435 | WP_000883925.1 | hypothetical protein | - |
SE14_RS23815 () | 3728..4843 | - | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
SE14_RS23820 () | 5112..5720 | + | 609 | WP_000849071.1 | hypothetical protein | - |
SE14_RS23825 () | 5725..6246 | + | 522 | WP_000393785.1 | hypothetical protein | - |
SE14_RS23830 () | 6249..6770 | + | 522 | WP_000805800.1 | hypothetical protein | - |
SE14_RS23835 () | 6867..7340 | + | 474 | WP_000057877.1 | hypothetical protein | - |
SE14_RS23840 () | 7351..7644 | + | 294 | WP_001370730.1 | hypothetical protein | - |
SE14_RS23845 () | 7649..8503 | + | 855 | WP_000539392.1 | hypothetical protein | - |
SE14_RS23850 () | 8503..9462 | + | 960 | WP_000829616.1 | S49 family peptidase | - |
SE14_RS23855 () | 9478..10338 | + | 861 | WP_000139698.1 | DsbA family protein | - |
SE14_RS23860 () | 10372..10800 | + | 429 | WP_000591074.1 | hypothetical protein | - |
SE14_RS23865 () | 10857..11216 | + | 360 | WP_000422768.1 | hypothetical protein | - |
SE14_RS23870 () | 11216..11662 | + | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
SE14_RS23875 () | 11659..12177 | + | 519 | WP_000210756.1 | nitrite reductase | - |
SE14_RS23880 () | 12177..12407 | + | 231 | WP_000972663.1 | hypothetical protein | - |
SE14_RS23885 () | 12394..13251 | + | 858 | WP_001167032.1 | hypothetical protein | - |
SE14_RS23895 () | 13482..14009 | + | 528 | WP_001236377.1 | thermonuclease family protein | - |
SE14_RS23900 () | 14067..14339 | + | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
SE14_RS23905 () | 14427..14720 | + | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
SE14_RS23910 () | 14747..15049 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
SE14_RS23915 () | 15054..15404 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
SE14_RS23920 () | 15567..16115 | + | 549 | WP_001061574.1 | transcriptional regulator | - |
SE14_RS27880 () | 16456..16650 | + | 195 | WP_000343597.1 | hypothetical protein | - |
SE14_RS27885 () | 16661..17032 | + | 372 | WP_000516916.1 | hypothetical protein | - |
SE14_RS23940 () | 17025..17495 | + | 471 | WP_001281821.1 | hypothetical protein | - |
SE14_RS23945 () | 17510..17845 | - | 336 | WP_000683476.1 | hypothetical protein | - |
SE14_RS23950 () | 17942..18430 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
SE14_RS23955 () | 18433..18930 | + | 498 | WP_000062185.1 | hypothetical protein | - |
SE14_RS23960 () | 19145..19849 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
SE14_RS23965 () | 19914..20093 | - | 180 | Protein_32 | helix-turn-helix transcriptional regulator | - |
SE14_RS23970 () | 20400..21104 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
SE14_RS23975 () | 21150..22424 | + | 1275 | Protein_34 | IS91-like element ISVsa3 family transposase | - |
SE14_RS28465 () | 22893..23339 | + | 447 | Protein_35 | DUF3363 domain-containing protein | - |
SE14_RS23985 () | 23556..24770 | + | 1215 | WP_000214123.1 | chloramphenicol/florfenicol efflux MFS transporter FloR | - |
SE14_RS23990 () | 24798..25103 | + | 306 | WP_001255015.1 | LysR family transcriptional regulator | - |
SE14_RS28245 () | 25215..25403 | + | 189 | Protein_38 | IS91 family transposase | - |
SE14_RS23995 () | 25370..26569 | - | 1200 | WP_000804063.1 | tetracycline efflux MFS transporter Tet(A) | - |
SE14_RS24000 () | 26675..27325 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
SE14_RS24005 () | 27357..27599 | - | 243 | WP_000844627.1 | transposase | - |
SE14_RS24010 () | 27905..28741 | - | 837 | WP_000480968.1 | aminoglycoside O-phosphotransferase APH(6)-Id | - |
SE14_RS24015 () | 28741..29544 | - | 804 | WP_001082319.1 | aminoglycoside O-phosphotransferase APH(3'')-Ib | - |
SE14_RS24020 () | 29605..30420 | - | 816 | WP_001043260.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | - |
SE14_RS24025 () | 30727..31038 | + | 312 | WP_000338945.1 | hypothetical protein | - |
SE14_RS24030 () | 31212..31997 | + | 786 | WP_001151304.1 | ParA family protein | - |
SE14_RS24035 () | 32001..33182 | + | 1182 | WP_001207227.1 | ParB/RepB/Spo0J family partition protein | - |
SE14_RS24040 () | 33231..33503 | + | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
SE14_RS24045 () | 33556..34191 | - | 636 | WP_000074431.1 | N-6 DNA methylase | - |
SE14_RS28250 () | 34283..34426 | - | 144 | WP_000939033.1 | hypothetical protein | - |
SE14_RS24050 () | 34753..35130 | + | 378 | WP_001125904.1 | hypothetical protein | - |
SE14_RS28470 () | 35123..35404 | + | 282 | WP_000044823.1 | hypothetical protein | - |
SE14_RS24060 () | 35379..36053 | + | 675 | WP_000344149.1 | hypothetical protein | - |
SE14_RS24065 () | 36121..36552 | + | 432 | WP_001326170.1 | hypothetical protein | - |
SE14_RS24070 () | 36558..36869 | + | 312 | WP_001447539.1 | hypothetical protein | - |
SE14_RS24075 () | 36878..37378 | + | 501 | WP_000647188.1 | hypothetical protein | - |
SE14_RS24080 () | 37382..38809 | + | 1428 | WP_000936897.1 | DNA cytosine methyltransferase | - |
SE14_RS24085 () | 38809..39465 | + | 657 | WP_000268552.1 | hypothetical protein | - |
SE14_RS24090 () | 39521..40138 | + | 618 | WP_000464630.1 | hypothetical protein | - |
SE14_RS24100 () | 40350..40649 | + | 300 | WP_001326171.1 | hypothetical protein | - |
SE14_RS24105 () | 40740..41228 | - | 489 | WP_000467110.1 | hypothetical protein | - |
SE14_RS24110 () | 41243..43435 | - | 2193 | WP_000366823.1 | DNA topoisomerase 3 | - |
SE14_RS24115 () | 43435..43668 | - | 234 | WP_001191890.1 | hypothetical protein | - |
SE14_RS24120 () | 43650..44267 | - | 618 | WP_001249395.1 | hypothetical protein | - |
SE14_RS24125 () | 44435..47407 | + | 2973 | WP_001326173.1 | TraI domain-containing protein | - |
SE14_RS24130 () | 47404..49269 | + | 1866 | WP_000178857.1 | conjugative transfer system coupling protein TraD | - |
SE14_RS24135 () | 49280..49864 | + | 585 | WP_000332868.1 | hypothetical protein | - |
SE14_RS24140 () | 49821..50450 | + | 630 | WP_000743449.1 | DUF4400 domain-containing protein | - |
SE14_RS24145 () | 50460..50906 | + | 447 | WP_000122507.1 | hypothetical protein | - |
SE14_RS24150 () | 50916..51293 | + | 378 | WP_000869297.1 | hypothetical protein | - |
SE14_RS24155 () | 51293..51955 | + | 663 | WP_001231464.1 | hypothetical protein | - |
SE14_RS24160 () | 52279..52656 | + | 378 | WP_001326174.1 | hypothetical protein | - |
SE14_RS24165 () | 52801..53082 | + | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
SE14_RS24170 () | 53079..53705 | + | 627 | WP_001049717.1 | hypothetical protein | - |
SE14_RS24175 () | 53689..54606 | + | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
SE14_RS24180 () | 54606..55919 | + | 1314 | WP_024131605.1 | conjugal transfer protein TraB | - |
SE14_RS24185 () | 55916..56494 | + | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
SE14_RS24190 () | 56498..56890 | + | 393 | WP_000479535.1 | hypothetical protein | - |
SE14_RS24195 () | 57175..58437 | + | 1263 | WP_000608644.1 | IS1380-like element ISEc9 family transposase | - |
SE14_RS24200 () | 58761..59906 | + | 1146 | WP_000976514.1 | class C beta-lactamase CMY-2 | - |
SE14_RS24205 () | 60000..60533 | + | 534 | WP_001221666.1 | lipocalin family protein | - |
SE14_RS24210 () | 60530..60847 | - | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
SE14_RS24215 () | 61575..67061 | + | 5487 | WP_000606835.1 | DUF4165 domain-containing protein | - |
SE14_RS24220 () | 67210..67917 | + | 708 | WP_001259346.1 | DsbC family protein | - |
SE14_RS24225 () | 67914..70361 | + | 2448 | WP_000637384.1 | type IV secretion system protein TraC | - |
SE14_RS24230 () | 70376..70693 | + | 318 | WP_000351984.1 | hypothetical protein | - |
SE14_RS24235 () | 70690..71220 | + | 531 | WP_001010740.1 | S26 family signal peptidase | - |
SE14_RS24240 () | 71183..72448 | + | 1266 | WP_001447719.1 | conjugal transfer protein TraW | - |
SE14_RS24245 () | 72445..73116 | + | 672 | WP_000575345.1 | EAL domain-containing protein | - |
SE14_RS24250 () | 73113..74120 | + | 1008 | WP_000983282.1 | TraU family protein | - |
SE14_RS24255 () | 74224..77031 | + | 2808 | WP_001447718.1 | conjugal transfer mating pair stabilization protein TraN | - |
SE14_RS24260 () | 77070..77930 | - | 861 | WP_000709517.1 | hypothetical protein | - |
SE14_RS24265 () | 78053..78694 | - | 642 | WP_000796664.1 | hypothetical protein | - |
SE14_RS24270 () | 78988..79308 | + | 321 | WP_000547566.1 | hypothetical protein | - |
SE14_RS24275 () | 79612..79797 | + | 186 | WP_001186917.1 | hypothetical protein | - |
SE14_RS24280 () | 80017..80985 | + | 969 | WP_000085160.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
SE14_RS24285 () | 80996..81904 | + | 909 | WP_000739139.1 | hypothetical protein | - |
SE14_RS24290 () | 81965..82495 | + | 531 | WP_000987165.1 | single-stranded DNA-binding protein | - |
SE14_RS24295 () | 82590..83579 | + | 990 | WP_001282585.1 | phage recombination protein Bet | - |
SE14_RS24300 () | 83642..84652 | + | 1011 | WP_000706865.1 | YqaJ viral recombinase family protein | - |
SE14_RS24305 () | 84877..85581 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
SE14_RS24310 () | 85755..86105 | + | 351 | WP_001132147.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
SE14_RS24315 () | 86139..86336 | - | 198 | WP_000843496.1 | DUF2933 domain-containing protein | - |
SE14_RS24320 () | 86377..88854 | - | 2478 | WP_001398208.1 | Ag(+)-translocating P-type ATPase SilP | - |
SE14_RS24325 () | 88951..89391 | - | 441 | WP_000758221.1 | hypothetical protein | - |
SE14_RS24330 () | 89478..92624 | - | 3147 | WP_022630998.1 | Cu(+)/Ag(+) efflux RND transporter permease subunit SilA | - |
SE14_RS24335 () | 92635..93927 | - | 1293 | WP_001398209.1 | Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB | - |
SE14_RS24340 () | 94041..94394 | - | 354 | WP_001246155.1 | cation efflux system protein CusF | - |
SE14_RS24345 () | 94422..95807 | - | 1386 | WP_000475512.1 | Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC | - |
SE14_RS24350 () | 95997..96677 | + | 681 | WP_000697969.1 | copper/silver response regulator transcription factor SilR | - |
SE14_RS24355 () | 96670..98145 | + | 1476 | WP_022630999.1 | copper/silver sensor histidine kinase SilS | - |
SE14_RS24360 () | 98396..98827 | + | 432 | WP_000790483.1 | silver-binding protein SilE | - |
SE14_RS24365 () | 98971..99321 | + | 351 | WP_000694953.1 | DUF305 domain-containing protein | - |
SE14_RS24370 () | 99709..100617 | - | 909 | Protein_114 | HNH endonuclease | - |
SE14_RS24375 () | 101254..102228 | + | 975 | WP_001148756.1 | sensor domain-containing diguanylate cyclase | - |
SE14_RS28255 () | 103159..103830 | + | 672 | WP_000796235.1 | hypothetical protein | - |
SE14_RS24385 () | 103850..104638 | + | 789 | WP_022631000.1 | site-specific integrase | - |
SE14_RS24390 () | 104932..105828 | - | 897 | Protein_118 | IS3 family transposase | - |
SE14_RS24395 () | 105838..106989 | - | 1152 | Protein_119 | IS30-like element IS30 family transposase | - |
SE14_RS24400 () | 107071..107220 | - | 150 | Protein_120 | IS3 family transposase | - |
SE14_RS24405 () | 107367..107648 | + | 282 | WP_000639434.1 | hypothetical protein | - |
SE14_RS27900 () | 107749..108447 | - | 699 | Protein_122 | IS1 family transposase | - |
SE14_RS24420 () | 108557..109882 | + | 1326 | WP_022631019.1 | pyridine nucleotide-disulfide oxidoreductase | - |
SE14_RS27915 () | 110061..110758 | + | 698 | Protein_124 | IS1 family transposase | - |
SE14_RS24435 () | 110788..111135 | + | 348 | WP_000612626.1 | IS66 family insertion sequence element accessory protein TnpB | - |
SE14_RS27260 () | 111184..112721 | + | 1538 | Protein_126 | IS66 family transposase | - |
SE14_RS28260 () | 113887..114585 | + | 699 | Protein_127 | IS1 family transposase | - |
SE14_RS24460 () | 114604..115449 | + | 846 | Protein_128 | IS3 family transposase | - |
SE14_RS24465 () | 115815..116786 | - | 972 | WP_000817038.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
SE14_RS24470 () | 116786..117403 | - | 618 | Protein_130 | AAA family ATPase | - |
SE14_RS24475 () | 117467..118171 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
SE14_RS24480 () | 118340..118819 | + | 480 | WP_000888203.1 | Rrf2 family transcriptional regulator | - |
SE14_RS24485 () | 118889..122041 | - | 3153 | WP_000347934.1 | multidrug efflux RND transporter permease subunit OqxB | - |
SE14_RS24490 () | 122065..123240 | - | 1176 | WP_002914189.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA | - |
SE14_RS24495 () | 123560..124264 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
SE14_RS25745 () | 124388..124672 | + | 285 | WP_001376233.1 | bleomycin resistance protein | - |
SE14_RS24500 () | 124992..125384 | - | 393 | WP_000084745.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
SE14_RS24505 () | 125869..126660 | - | 792 | WP_001206356.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2 | - |
SE14_RS28265 () | 126666..126956 | - | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
SE14_RS24510 () | 127068..127565 | - | 498 | WP_001083725.1 | trimethoprim-resistant dihydrofolate reductase DfrA12 | - |
SE14_RS24515 () | 127710..128723 | + | 1014 | WP_000845054.1 | class 1 integron integrase IntI1 | - |
SE14_RS24520 () | 128858..129562 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
SE14_RS28350 () | 129640..129735 | + | 96 | WP_162198500.1 | hypothetical protein | - |
SE14_RS24525 () | 129856..130230 | + | 375 | WP_000868820.1 | hypothetical protein | - |
SE14_RS24530 () | 130345..131070 | + | 726 | WP_000988731.1 | hypothetical protein | - |
SE14_RS24535 () | 131203..135456 | + | 4254 | WP_001257735.1 | RHS domain-containing protein | - |
SE14_RS24540 () | 135428..135868 | + | 441 | WP_001326394.1 | hypothetical protein | - |
SE14_RS28360 () | 136039..136491 | + | 453 | Protein_148 | hypothetical protein | - |
SE14_RS24550 () | 136507..137109 | - | 603 | WP_000278322.1 | hypothetical protein | - |
SE14_RS24555 () | 137379..137660 | + | 282 | WP_000575657.1 | hypothetical protein | - |
SE14_RS24565 () | 137959..138495 | + | 537 | WP_000949433.1 | hypothetical protein | - |
SE14_RS24570 () | 138498..139508 | + | 1011 | WP_000543934.1 | tyrosine-type recombinase/integrase | - |
SE14_RS24575 () | 139513..140382 | + | 870 | WP_000997323.1 | 3'-5' exonuclease | - |
SE14_RS24580 () | 140379..140870 | + | 492 | WP_000139717.1 | hypothetical protein | - |
SE14_RS24585 () | 141197..142072 | + | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
SE14_RS24590 () | 142234..143274 | + | 1041 | WP_000101568.1 | DNA-binding protein | - |
SE14_RS24600 () | 143561..145072 | + | 1512 | WP_000811656.1 | UvrD-helicase domain-containing protein | - |
SE14_RS24605 () | 145183..146223 | + | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
SE14_RS24610 () | 146225..147658 | + | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
SE14_RS24615 () | 147671..151285 | + | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
SE14_RS24620 () | 151323..151685 | - | 363 | WP_000683483.1 | hypothetical protein | - |
SE14_RS24625 () | 152401..152673 | + | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
SE14_RS24630 () | 152673..153206 | + | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
SE14_RS24635 () | 153217..153825 | + | 609 | Protein_164 | transcriptional regulator | - |
SE14_RS24640 () | 153822..154373 | + | 552 | WP_001020646.1 | hypothetical protein | - |
SE14_RS24645 () | 154433..154852 | - | 420 | WP_000651490.1 | H-NS histone family protein | - |
SE14_RS24650 () | 154854..155147 | - | 294 | WP_000919078.1 | hypothetical protein | - |
SE14_RS24655 () | 155164..156147 | - | 984 | WP_000077458.1 | ParM/StbA family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
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