MGE detailed information
MGE type: Genomic_island MGE length: 11601 bp
Accession: NZ_CP011321 Location: 1573329..1584929 Organism: Escherichia coli strain SQ88 Replicon: chromosome
Accession: NZ_CP011321 Location: 1573329..1584929 Organism: Escherichia coli strain SQ88 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SG49_RS07800 () | 1570144..1571829 | - | 1686 | WP_000628576.1 | ABC transporter ATP-binding protein/permease | - |
| SG49_RS25450 () | 1572032..1572154 | + | 123 | WP_120795387.1 | protein YneP | - |
| SG49_RS07805 () | 1572120..1573277 | - | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| SG49_RS07810 () | 1573329..1575011 | - | 1683 | WP_001295684.1 | sulfatase | - |
| SG49_RS07815 () | 1575413..1576174 | - | 762 | WP_000060495.1 | acid stress response transcriptional regulator YdeO | - |
| SG49_RS07820 () | 1576249..1576446 | - | 198 | WP_000543384.1 | two-component system connector SafA | - |
| SG49_RS07825 () | 1576694..1578973 | - | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| SG49_RS07830 () | 1579307..1580221 | - | 915 | WP_000520676.1 | Type 1 fimbrin D-mannose specific adhesin | VF |
| SG49_RS07835 () | 1580280..1580783 | - | 504 | WP_000825452.1 | Protein FimG | VF |
| SG49_RS07840 () | 1580796..1581326 | - | 531 | WP_000876763.1 | Protein FimF | VF |
| SG49_RS07845 () | 1581340..1582566 | - | 1227 | Protein_1502 | Outer membrane usher protein FimD | VF |
| SG49_RS07850 () | 1582821..1583029 | - | 209 | Protein_1503 | helix-turn-helix transcriptional regulator | - |
| SG49_RS07855 () | 1583341..1584663 | - | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| SG49_RS07860 () | 1584663..1584929 | - | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| SG49_RS07865 () | 1585152..1586552 | - | 1401 | WP_001083595.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.003 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22685 | NC_010473 | 1669461..1680091 | 0.002 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0 |