MGE detailed information
MGE type: Prophage MGE length: 74926 bp
Accession: NZ_CP011132 Location: 5310919..5385844 Organism: Citrobacter amalonaticus Y19 Replicon: chromosome
Accession: NZ_CP011132 Location: 5310919..5385844 Organism: Citrobacter amalonaticus Y19 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F384_RS24740 () | 5307328..5307567 | + | 240 | Protein_4899 | glycerol dehydrogenase | - |
| F384_RS24745 () | 5307603..5308619 | + | 1017 | WP_001310555.1 | IS5-like element IS5 family transposase | - |
| F384_RS24750 () | 5308767..5309447 | - | 681 | Protein_4901 | site-specific DNA-methyltransferase | - |
| F384_RS24755 () | 5309507..5310916 | - | 1410 | WP_046495790.1 | DUF2130 domain-containing protein | - |
| F384_RS24760 () | 5310919..5312799 | - | 1881 | WP_046495793.1 | ATP-dependent endonuclease | - |
| F384_RS24765 () | 5312834..5313522 | - | 689 | Protein_4904 | DUF4391 domain-containing protein | - |
| F384_RS24770 () | 5313519..5316797 | - | 3279 | WP_046495798.1 | DEAD/DEAH box helicase family protein | - |
| F384_RS24775 () | 5317146..5318009 | + | 864 | WP_046495804.1 | GTPase family protein | - |
| F384_RS24780 () | 5318107..5318940 | + | 834 | WP_046495809.1 | DUF945 domain-containing protein | - |
| F384_RS24785 () | 5319142..5319846 | + | 705 | WP_046495813.1 | WYL domain-containing protein | - |
| F384_RS24790 () | 5319843..5320457 | + | 615 | WP_046495819.1 | hypothetical protein | - |
| F384_RS24795 () | 5320546..5320956 | + | 411 | WP_046495825.1 | hypothetical protein | - |
| F384_RS24800 () | 5321034..5321270 | + | 237 | WP_046495830.1 | DUF905 domain-containing protein | - |
| F384_RS24805 () | 5321349..5321807 | + | 459 | WP_046495834.1 | antirestriction protein | - |
| F384_RS24810 () | 5321823..5322299 | + | 477 | WP_046495838.1 | RadC family protein | - |
| F384_RS29540 () | 5322308..5322529 | + | 222 | WP_000691995.1 | DUF987 domain-containing protein | - |
| F384_RS24815 () | 5322548..5322865 | + | 318 | WP_046495841.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| F384_RS29545 () | 5322886..5323227 | + | 342 | WP_048215514.1 | TA system toxin CbtA family protein | Toxin Detail |
| F384_RS24825 () | 5323343..5324176 | + | 834 | WP_046495848.1 | DUF4942 domain-containing protein | - |
| F384_RS24830 () | 5324498..5325934 | + | 1437 | WP_046495851.1 | hypothetical protein ; Integrase | Integrase |
| F384_RS24835 () | 5325924..5326607 | + | 684 | WP_046495854.1 | hypothetical protein | - |
| F384_RS24840 () | 5326748..5326954 | + | 207 | WP_046495857.1 | helix-turn-helix domain-containing protein | - |
| F384_RS29550 () | 5327436..5327627 | - | 192 | WP_080950105.1 | toxin-antitoxin system HicB family antitoxin | - |
| F384_RS24845 () | 5327761..5328012 | + | 252 | WP_046495862.1 | host cell division inhibitor Icd-like protein | - |
| F384_RS24850 () | 5328005..5328196 | + | 192 | WP_046495865.1 | hypothetical protein | - |
| F384_RS24855 () | 5328189..5328497 | + | 309 | WP_046275065.1 | hypothetical protein | - |
| F384_RS24860 () | 5328494..5328862 | + | 369 | WP_046275066.1 | hypothetical protein | - |
| F384_RS24865 () | 5328859..5330658 | + | 1800 | WP_046275067.1 | DNA primase | - |
| F384_RS24870 () | 5331199..5332239 | + | 1041 | WP_046275068.1 | major capsid protein | - |
| F384_RS24875 () | 5332249..5332590 | + | 342 | WP_046275069.1 | head decoration protein | - |
| F384_RS24880 () | 5332601..5332984 | + | 384 | WP_046495875.1 | AlpA family phage regulatory protein | - |
| F384_RS24885 () | 5333255..5333830 | + | 576 | WP_052746986.1 | tail assembly protein | - |
| F384_RS24890 () | 5333908..5334594 | + | 687 | WP_046495887.1 | hypothetical protein | - |
| F384_RS24900 () | 5334966..5335472 | + | 507 | WP_046495891.1 | G/U mismatch-specific DNA glycosylase | - |
| F384_RS24905 () | 5335506..5335916 | - | 411 | WP_046495895.1 | hypothetical protein | - |
| F384_RS24910 () | 5336119..5337966 | - | 1848 | WP_046495899.1 | RNA polymerase sigma factor RpoD | - |
| F384_RS24915 () | 5338135..5339880 | - | 1746 | WP_046495904.1 | DNA primase | - |
| F384_RS24920 () | 5340109..5340324 | - | 216 | WP_001144069.1 | 30S ribosomal protein S21 | - |
| F384_RS24925 () | 5340552..5341565 | + | 1014 | WP_046496796.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| F384_RS24930 () | 5341690..5342307 | - | 618 | WP_042324316.1 | Urease accessory protein UreG | VF |
| F384_RS24935 () | 5342317..5342991 | - | 675 | WP_046496804.1 | urease accessory protein UreF | - |
| F384_RS24940 () | 5342991..5343449 | - | 459 | WP_046496807.1 | urease accessory protein UreE | - |
| F384_RS24945 () | 5343459..5345162 | - | 1704 | WP_046496810.1 | Urease subunit alpha | VF |
| F384_RS24950 () | 5345155..5345475 | - | 321 | WP_046496813.1 | Urease subunit beta | VF |
| F384_RS24955 () | 5345485..5345787 | - | 303 | WP_046496816.1 | Urease subunit gamma | VF |
| F384_RS24960 () | 5345798..5346538 | - | 741 | WP_046498634.1 | urease accessory protein UreD | - |
| F384_RS24965 () | 5346746..5348209 | - | 1464 | WP_046496819.1 | anion permease | - |
| F384_RS24970 () | 5348258..5348863 | - | 606 | WP_046496822.1 | L(+)-tartrate dehydratase subunit beta | - |
| F384_RS24975 () | 5348860..5349771 | - | 912 | WP_094464815.1 | L(+)-tartrate dehydratase subunit alpha | - |
| F384_RS24980 () | 5349982..5350914 | + | 933 | WP_046498638.1 | LysR family transcriptional regulator | - |
| F384_RS24985 () | 5350948..5351565 | - | 618 | WP_042324298.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| F384_RS24990 () | 5351672..5352037 | + | 366 | WP_042324296.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| F384_RS24995 () | 5352263..5353084 | + | 822 | WP_046496827.1 | undecaprenyl-diphosphate phosphatase | - |
| F384_RS25000 () | 5353189..5354430 | - | 1242 | WP_046496831.1 | multifunctional CCA addition/repair protein | - |
| F384_RS25005 () | 5354496..5355116 | - | 621 | WP_046496834.1 | SH3 domain-containing protein | - |
| F384_RS25010 () | 5355358..5356659 | + | 1302 | WP_046496838.1 | inorganic triphosphatase | - |
| F384_RS25015 () | 5356767..5359592 | + | 2826 | WP_046496841.1 | bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase | - |
| F384_RS25020 () | 5359644..5361077 | + | 1434 | WP_046496846.1 | Bifunctional protein HldE | VF |
| F384_RS25025 () | 5361242..5361448 | + | 207 | WP_080343280.1 | cell surface composition regulator GlgS | - |
| F384_RS25030 () | 5361482..5361778 | - | 297 | WP_046496849.1 | ubiquinone biosynthesis accessory factor UbiK | - |
| F384_RS25040 () | 5362166..5362819 | + | 654 | WP_046496857.1 | 3,4-dihydroxy-2-butanone-4-phosphate synthase | - |
| F384_RS28155 () | 5363032..5363208 | + | 177 | WP_052746987.1 | hypothetical protein | - |
| F384_RS25045 () | 5363228..5364001 | - | 774 | WP_046496864.1 | zinc transporter ZupT | - |
| F384_RS25050 () | 5364134..5364922 | + | 789 | WP_046496869.1 | 4,5-DOPA dioxygenase extradiol | - |
| F384_RS25055 () | 5365008..5366168 | - | 1161 | WP_046496874.1 | glutathionylspermidine synthase family protein | - |
| F384_RS25060 () | 5366174..5366839 | - | 666 | WP_046496880.1 | DUF1190 family protein | - |
| F384_RS25065 () | 5366989..5368470 | - | 1482 | WP_046496884.1 | outer membrane channel protein TolC | - |
| F384_RS25070 () | 5368676..5369308 | + | 633 | WP_046496890.1 | ADP-ribose diphosphatase | - |
| F384_RS25075 () | 5369305..5369727 | + | 423 | WP_046496895.1 | DUF1249 family protein | - |
| F384_RS25080 () | 5369752..5370579 | + | 828 | WP_046496900.1 | 3',5'-cyclic-AMP phosphodiesterase | - |
| F384_RS25085 () | 5370579..5371160 | + | 582 | WP_046496904.1 | esterase YqiA | - |
| F384_RS25090 () | 5371188..5373080 | + | 1893 | WP_046496908.1 | DNA topoisomerase IV subunit B | - |
| F384_RS25095 () | 5373128..5373976 | - | 849 | WP_046496911.1 | AraC family transcriptional regulator | - |
| F384_RS25100 () | 5374142..5375962 | + | 1821 | WP_046496914.1 | DUF2264 domain-containing protein | - |
| F384_RS25105 () | 5375973..5377241 | + | 1269 | WP_046496917.1 | oligosaccharide MFS transporter | - |
| F384_RS25110 () | 5377265..5378455 | + | 1191 | WP_046496919.1 | glycoside hydrolase family 88 protein | - |
| F384_RS25115 () | 5378632..5379816 | + | 1185 | WP_046496923.1 | PLP-dependent aminotransferase family protein | - |
| F384_RS25120 () | 5379871..5380185 | - | 315 | WP_046496927.1 | antibiotic biosynthesis monooxygenase | - |
| F384_RS25125 () | 5380216..5380797 | - | 582 | WP_046496933.1 | NAD(P)H-dependent oxidoreductase | - |
| F384_RS25130 () | 5380906..5382255 | - | 1350 | WP_046496938.1 | two-component system sensor histidine kinase QseC | - |
| F384_RS25135 () | 5382246..5382911 | - | 666 | WP_046496944.1 | Transcriptional regulatory protein QseB | VF |
| F384_RS25140 () | 5383063..5383455 | + | 393 | WP_042324346.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| F384_RS25145 () | 5383586..5385844 | + | 2259 | WP_046496949.1 | DNA topoisomerase IV subunit A | - |
| F384_RS25150 () | 5386028..5386765 | + | 738 | WP_046496954.1 | 1-acylglycerol-3-phosphate O-acyltransferase | - |
| F384_RS25155 () | 5386888..5388300 | + | 1413 | WP_046496959.1 | cell division protein FtsP | - |
| F384_RS25160 () | 5388410..5390581 | + | 2172 | WP_046496962.1 | YgiQ family radical SAM protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|