MGE detailed information
MGE type: Genomic_island MGE length: 28087 bp
Accession: NZ_CP011117 Location: 5154154..5182240 Organism: Pseudomonas synxantha strain LBUM223 Replicon: chromosome
Accession: NZ_CP011117 Location: 5154154..5182240 Organism: Pseudomonas synxantha strain LBUM223 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VO64_RS24210 () | 5149188..5149748 | - | 561 | WP_003189463.1 | glycine cleavage system protein R | - |
| VO64_RS24215 () | 5150011..5150889 | + | 879 | WP_046071422.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| VO64_RS24220 () | 5150907..5152022 | + | 1116 | WP_046071423.1 | outer membrane protein assembly factor BamC | - |
| VO64_RS24225 () | 5152027..5152785 | + | 759 | WP_046071424.1 | MBL fold metallo-hydrolase | - |
| VO64_RS24230 () | 5152813..5153526 | + | 714 | WP_010212191.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| VO64_RS24240 () | 5154154..5155560 | + | 1407 | WP_046071425.1 | hypothetical protein | - |
| VO64_RS24245 () | 5155625..5156002 | - | 378 | WP_046071426.1 | hypothetical protein | - |
| VO64_RS24250 () | 5156873..5157778 | - | 906 | WP_046071427.1 | replication initiation protein | - |
| VO64_RS24255 () | 5158203..5159309 | - | 1107 | WP_080944799.1 | DnaJ domain-containing protein | - |
| VO64_RS24260 () | 5159414..5161252 | - | 1839 | WP_046071428.1 | hypothetical protein | - |
| VO64_RS24265 () | 5161730..5163301 | - | 1572 | WP_130871776.1 | hypothetical protein ; Integrase | Integrase |
| VO64_RS24270 () | 5163579..5163974 | + | 396 | WP_046071429.1 | nucleotidyltransferase domain-containing protein | - |
| VO64_RS24275 () | 5163964..5164383 | + | 420 | WP_046071430.1 | DUF86 domain-containing protein | - |
| VO64_RS31540 () | 5164416..5164496 | - | 81 | Protein_4675 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| VO64_RS31545 () | 5164497..5164607 | - | 111 | Protein_4676 | multidrug transporter | - |
| VO64_RS24285 () | 5164802..5166316 | + | 1515 | WP_046067918.1 | IS21 family transposase ISPsy14 | Transposase |
| VO64_RS24290 () | 5166337..5167092 | + | 756 | WP_046067917.1 | IS21 family transposase ISPsy41 | Transposase |
| VO64_RS24300 () | 5167601..5167852 | + | 252 | WP_046071431.1 | hypothetical protein | - |
| VO64_RS24305 () | 5167928..5169154 | - | 1227 | WP_005786037.1 | MFS transporter | - |
| VO64_RS24310 () | 5169347..5170597 | + | 1251 | WP_046068046.1 | IS256 family transposase ISPa73 | Transposase |
| VO64_RS24315 () | 5170753..5171040 | - | 288 | WP_003189536.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| VO64_RS24320 () | 5171043..5171357 | - | 315 | WP_046071432.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| VO64_RS24325 () | 5171463..5172404 | - | 942 | WP_046071433.1 | LysR family transcriptional regulator | - |
| VO64_RS24330 () | 5172562..5173878 | + | 1317 | WP_046071434.1 | MHS family MFS transporter | - |
| VO64_RS24335 () | 5173890..5175119 | + | 1230 | WP_046071435.1 | hypothetical protein | VF |
| VO64_RS24340 () | 5175131..5176168 | + | 1038 | WP_046071436.1 | histone deacetylase family protein | - |
| VO64_RS24345 () | 5176187..5176540 | - | 354 | WP_046071437.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| VO64_RS24350 () | 5176537..5176941 | - | 405 | WP_046071438.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| VO64_RS24355 () | 5177152..5178054 | + | 903 | WP_046072677.1 | hypothetical protein | VF |
| VO64_RS24360 () | 5178046..5178804 | - | 759 | WP_046071439.1 | substrate-binding domain-containing protein | - |
| VO64_RS24365 () | 5178804..5180108 | - | 1305 | WP_046071440.1 | MFS transporter | - |
| VO64_RS31550 () | 5180306..5180449 | + | 144 | WP_173664474.1 | hypothetical protein | - |
| VO64_RS24370 () | 5180610..5181047 | - | 438 | WP_046071441.1 | hypothetical protein | - |
| VO64_RS31555 () | 5182064..5182240 | - | 177 | WP_173664475.1 | hypothetical protein | - |
| VO64_RS24385 () | 5182370..5183293 | + | 924 | WP_046071442.1 | LysR family transcriptional regulator | - |
| VO64_RS24390 () | 5183383..5184318 | - | 936 | WP_046071443.1 | LysR family transcriptional regulator | - |
| VO64_RS24395 () | 5184456..5185643 | - | 1188 | WP_046071444.1 | cyanate transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|