MGE detailed information
MGE type: Genomic_island MGE length: 39308 bp
Accession: NZ_CP011020 Location: 4684467..4723774 Organism: Pseudomonas chlororaphis strain UFB2 isolate Soil Replicon: chromosome
Accession: NZ_CP011020 Location: 4684467..4723774 Organism: Pseudomonas chlororaphis strain UFB2 isolate Soil Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VM99_RS20535 () | 4679898..4680569 | + | 672 | WP_047738376.1 | lactate utilization protein | - |
| VM99_RS20540 () | 4680566..4683376 | + | 2811 | WP_047738378.1 | FAD-binding oxidoreductase | - |
| VM99_RS20545 () | 4683504..4683785 | + | 282 | WP_042729997.1 | hypothetical protein | - |
| VM99_RS20550 () | 4684467..4685723 | + | 1257 | WP_047738380.1 | Prophage integrase IntA ; Integrase | Integrase |
| VM99_RS20555 () | 4686674..4687654 | + | 981 | WP_047739543.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| VM99_RS28325 () | 4687651..4687932 | + | 282 | WP_080964338.1 | hypothetical protein | - |
| VM99_RS20565 () | 4688320..4691331 | + | 3012 | WP_047738383.1 | DEAD/DEAH box helicase family protein | - |
| VM99_RS20570 () | 4691746..4692129 | + | 384 | WP_047738385.1 | nucleotide pyrophosphohydrolase | - |
| VM99_RS20575 () | 4692154..4694022 | + | 1869 | WP_047738386.1 | DUF2075 domain-containing protein | - |
| VM99_RS20580 () | 4694402..4695229 | - | 828 | WP_047739545.1 | M24 family metallopeptidase | - |
| VM99_RS20585 () | 4695485..4695847 | - | 363 | WP_053007398.1 | hypothetical protein | - |
| VM99_RS20590 () | 4696516..4697454 | - | 939 | WP_042728195.1 | AraC family transcriptional regulator | - |
| VM99_RS20595 () | 4697478..4698311 | - | 834 | WP_047739548.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| VM99_RS20600 () | 4698760..4699662 | + | 903 | WP_042728194.1 | HTH-type transcriptional regulator PgrR | VF |
| VM99_RS20605 () | 4699687..4701042 | - | 1356 | WP_047738388.1 | fatty acid--CoA ligase family protein | - |
| VM99_RS20610 () | 4701070..4702266 | - | 1197 | WP_042728192.1 | cytochrome P450 | - |
| VM99_RS20615 () | 4702263..4702937 | - | 675 | WP_047738390.1 | HAD family phosphatase | - |
| VM99_RS20620 () | 4702961..4703980 | - | 1020 | WP_047738392.1 | ketoacyl-ACP synthase III | - |
| VM99_RS20625 () | 4703977..4704231 | - | 255 | WP_042728189.1 | acyl carrier protein | - |
| VM99_RS20630 () | 4704260..4704964 | - | 705 | WP_042728188.1 | SDR family oxidoreductase | - |
| VM99_RS20635 () | 4704954..4705259 | - | 306 | WP_042728187.1 | hypothetical protein | - |
| VM99_RS28335 () | 4705281..4706081 | - | 801 | WP_080922005.1 | hypothetical protein | - |
| VM99_RS20645 () | 4706093..4706848 | - | 756 | WP_047738394.1 | thioesterase II family protein | - |
| VM99_RS20650 () | 4707220..4708413 | - | 1194 | WP_042728184.1 | MFS transporter | - |
| VM99_RS20655 () | 4708437..4709990 | - | 1554 | WP_047738396.1 | MFS transporter | - |
| VM99_RS20660 () | 4710135..4711058 | + | 924 | WP_047738397.1 | HTH-type transcriptional regulator PgrR | VF |
| VM99_RS20665 () | 4711185..4711700 | + | 516 | WP_042728200.1 | putative RNA polymerase sigma factor FecI | VF |
| VM99_RS20670 () | 4711687..4712667 | + | 981 | WP_047738399.1 | DUF4880 domain-containing protein | - |
| VM99_RS20675 () | 4712789..4715161 | + | 2373 | WP_047738400.1 | TonB-dependent siderophore receptor | - |
| VM99_RS20680 () | 4715335..4715613 | + | 279 | WP_047738402.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| VM99_RS20685 () | 4715622..4715927 | + | 306 | WP_042728178.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| VM99_RS20690 () | 4715947..4717428 | - | 1482 | WP_047738404.1 | hypothetical protein | - |
| VM99_RS20695 () | 4717649..4718194 | + | 546 | WP_047738406.1 | RNA 2'-phosphotransferase | - |
| VM99_RS20700 () | 4718252..4718593 | - | 342 | WP_042728175.1 | hypothetical protein | - |
| VM99_RS20705 () | 4719329..4720177 | - | 849 | WP_047738408.1 | phosphatase PAP2 family protein | - |
| VM99_RS20710 () | 4720202..4720894 | - | 693 | WP_047738409.1 | histidine phosphatase family protein | - |
| VM99_RS20715 () | 4721139..4723058 | + | 1920 | WP_047738411.1 | Methyl-accepting chemotaxis protein McpS | VF |
| VM99_RS20720 () | 4723113..4723532 | - | 420 | WP_047738413.1 | type II toxin-antitoxin system VapC family toxin | - |
| VM99_RS20725 () | 4723529..4723774 | - | 246 | WP_042728168.1 | plasmid stabilization protein | - |
| VM99_RS20730 () | 4724010..4726568 | + | 2559 | WP_047738415.1 | toxin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|