MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 100282 bp
Accession: NZ_CP010898 Location: 1..100282 Organism: Pandoraea vervacti strain NS15 Replicon: plasmid pPV15
Accession: NZ_CP010898 Location: 1..100282 Organism: Pandoraea vervacti strain NS15 Replicon: plasmid pPV15
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UC34_RS24580 () | 194..493 | + | 300 | WP_047909192.1 | VirB3 family type IV secretion system protein | - |
| UC34_RS24585 () | 516..3179 | + | 2664 | WP_072617605.1 | Type IV secretion system protein virB4 | VF |
| UC34_RS24590 () | 3176..3844 | + | 669 | WP_072617593.1 | hypothetical protein | - |
| UC34_RS24595 () | 3897..4112 | + | 216 | WP_072617594.1 | hypothetical protein | - |
| UC34_RS24600 () | 4105..4512 | + | 408 | WP_072617595.1 | hypothetical protein | - |
| UC34_RS24605 () | 4500..5363 | + | 864 | WP_072617596.1 | type IV secretion system protein | - |
| UC34_RS24610 () | 5360..6034 | + | 675 | WP_044458717.1 | type IV secretion system protein | - |
| UC34_RS24615 () | 6100..6924 | + | 825 | WP_044458686.1 | Type IV secretion system protein virB9 | VF |
| UC34_RS24620 () | 6926..8155 | + | 1230 | WP_044458687.1 | Type IV secretion system protein virB10 | VF |
| UC34_RS24625 () | 8166..9188 | + | 1023 | WP_044458688.1 | Type IV secretion system protein VirB11 | VF |
| UC34_RS24630 () | 9256..10185 | + | 930 | WP_044458718.1 | Type IV secretion system protein virB1 | VF |
| UC34_RS24635 () | 10246..10851 | + | 606 | WP_044458689.1 | hypothetical protein | - |
| UC34_RS24640 () | 10877..11488 | + | 612 | WP_084071090.1 | Phospholipase D | VF |
| UC34_RS24645 () | 11513..13075 | + | 1563 | WP_044458690.1 | type IV secretion system DNA-binding domain-containing protein | - |
| UC34_RS24650 () | 13088..16078 | + | 2991 | WP_044458691.1 | Multifunctional conjugation protein TraI | Relaxase |
| UC34_RS24655 () | 16451..16812 | + | 362 | Protein_16 | conjugal transfer protein TraD | - |
| UC34_RS24660 () | 16946..17965 | + | 1020 | WP_044456547.1 | IS110 family transposase IS884 | Transposase |
| UC34_RS24665 () | 18194..19780 | - | 1587 | WP_044453172.1 | IS66 family transposase ISBcen14 | Transposase |
| UC34_RS24670 () | 19839..20186 | - | 348 | WP_044453173.1 | IS66 family transposase ISBcen14 | Transposase |
| UC34_RS24675 () | 20183..20671 | - | 489 | WP_084070255.1 | IS66 family transposase ISPre3 | Transposase |
| UC34_RS24680 () | 20836..21539 | + | 704 | Protein_21 | plasmid stabilization protein | - |
| UC34_RS24685 () | 21588..21941 | + | 354 | WP_044458720.1 | hypothetical protein | - |
| UC34_RS24690 () | 22025..22474 | - | 450 | WP_044458694.1 | DUF3318 domain-containing protein | - |
| UC34_RS24695 () | 22575..22919 | - | 345 | WP_044458695.1 | phage holin family protein | - |
| UC34_RS24700 () | 23050..23358 | - | 309 | WP_044458696.1 | YqjD family protein | - |
| UC34_RS24705 () | 24108..24320 | + | 213 | WP_044458697.1 | CsbD family protein | - |
| UC34_RS24710 () | 24662..25546 | + | 885 | WP_044458698.1 | hypothetical protein | - |
| UC34_RS24715 () | 25660..26329 | - | 670 | Protein_28 | glycosyltransferase family 2 protein | - |
| UC34_RS24720 () | 26326..26910 | - | 585 | WP_044458700.1 | class I SAM-dependent methyltransferase | - |
| UC34_RS24725 () | 26907..27665 | - | 759 | WP_044458701.1 | PIG-L family deacetylase | - |
| UC34_RS24730 () | 27653..28693 | - | 1041 | WP_052811327.1 | acyl-CoA/acyl-ACP dehydrogenase | - |
| UC34_RS25240 () | 28969..29255 | - | 287 | Protein_32 | chromosome partitioning protein ParB | - |
| UC34_RS24745 () | 30667..31872 | - | 1206 | WP_044453212.1 | IS110 family transposase ISBma3 | Transposase |
| UC34_RS24750 () | 32618..32857 | - | 240 | WP_157123390.1 | hypothetical protein | - |
| UC34_RS24755 () | 33138..33428 | - | 291 | WP_044458705.1 | DUF2471 family protein | - |
| UC34_RS25570 () | 33533..33874 | - | 342 | WP_157123391.1 | hypothetical protein | - |
| UC34_RS24760 () | 34269..35801 | + | 1533 | WP_044458706.1 | group II intron reverse transcriptase/maturase | - |
| UC34_RS24770 () | 36651..38462 | - | 1812 | WP_084071106.1 | ATM1-type heavy metal exporter | VF |
| UC34_RS24775 () | 39219..39845 | - | 627 | WP_044458708.1 | hypothetical protein | - |
| UC34_RS24780 () | 40507..41031 | + | 525 | WP_072617597.1 | plasmid stabilization protein | - |
| UC34_RS24785 () | 41080..41433 | + | 354 | WP_044458723.1 | hypothetical protein | - |
| UC34_RS24790 () | 41518..41967 | - | 450 | WP_052811329.1 | DUF3318 domain-containing protein | - |
| UC34_RS24795 () | 42068..42412 | - | 345 | WP_044458695.1 | phage holin family protein | - |
| UC34_RS24800 () | 42543..42803 | - | 261 | WP_044458710.1 | DUF883 family protein | - |
| UC34_RS24810 () | 42829..44027 | + | 1199 | WP_167370682.1 | IS3 family transposase ISButh1 | Transposase |
| UC34_RS25575 () | 44067..44153 | - | 87 | Protein_46 | DUF883 domain-containing protein | - |
| UC34_RS24820 () | 44321..45166 | - | 846 | WP_044458711.1 | universal stress protein | - |
| UC34_RS24825 () | 45282..47369 | + | 2088 | WP_167370705.1 | PAS domain-containing sensor histidine kinase | - |
| UC34_RS24830 () | 47374..48366 | - | 993 | WP_044458727.1 | zinc-dependent alcohol dehydrogenase family protein | - |
| UC34_RS24835 () | 48403..49203 | - | 801 | WP_052811322.1 | helix-turn-helix domain-containing protein | - |
| UC34_RS24840 () | 49332..49985 | - | 654 | WP_044458650.1 | Oxygen regulatory protein NreC | VF |
| UC34_RS24845 () | 50140..50610 | - | 471 | WP_044458651.1 | universal stress protein | - |
| UC34_RS24850 () | 50618..51169 | - | 552 | WP_052811323.1 | universal stress protein | - |
| UC34_RS24855 () | 51851..52138 | + | 288 | WP_044458652.1 | DUF1488 domain-containing protein | - |
| UC34_RS24860 () | 52409..53455 | + | 1047 | WP_072617598.1 | IS110 family transposase ISBcen5 | Transposase |
| UC34_RS24875 () | 55051..55576 | + | 526 | Protein_57 | cytochrome b | - |
| UC34_RS24880 () | 55664..57940 | + | 2277 | WP_044458655.1 | Cadmium-transporting ATPase | VF |
| UC34_RS24885 () | 58113..59090 | + | 978 | WP_084071098.1 | universal stress protein | - |
| UC34_RS24890 () | 59138..59791 | - | 654 | WP_044458657.1 | BON domain-containing protein | - |
| UC34_RS24895 () | 60278..60481 | + | 204 | WP_044458714.1 | dodecin family protein | - |
| UC34_RS24900 () | 60925..61980 | - | 1056 | WP_044458658.1 | hydrogenase expression/formation protein HypE | - |
| UC34_RS24905 () | 61977..63122 | - | 1146 | WP_044458659.1 | hydrogenase formation protein HypD | - |
| UC34_RS24910 () | 63119..63361 | - | 243 | WP_044458660.1 | HypC/HybG/HupF family hydrogenase formation chaperone | - |
| UC34_RS24915 () | 63361..65691 | - | 2331 | WP_044458661.1 | carbamoyltransferase HypF | - |
| UC34_RS24920 () | 65691..65975 | - | 285 | WP_044458662.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| UC34_RS24925 () | 65968..66483 | - | 516 | WP_044458663.1 | hydrogenase maturation protease | - |
| UC34_RS24930 () | 66480..67774 | - | 1295 | Protein_68 | nickel-dependent hydrogenase large subunit | - |
| UC34_RS24935 () | 67764..68540 | - | 777 | WP_044458664.1 | oxidoreductase | - |
| UC34_RS24940 () | 68542..69396 | - | 855 | WP_044458665.1 | FAD/NAD(P)-binding protein | - |
| UC34_RS24945 () | 69383..69841 | - | 459 | WP_044458666.1 | cyclic nucleotide-binding domain-containing protein | - |
| UC34_RS24950 () | 69828..70994 | - | 1167 | WP_044458667.1 | 4Fe-4S dicluster domain-containing protein | - |
| UC34_RS24955 () | 71249..71966 | - | 718 | Protein_73 | IS6 family transposase ISEas1 | Transposase |
| UC34_RS24960 () | 72679..74493 | - | 1815 | WP_167370706.1 | hypothetical protein | - |
| UC34_RS24965 () | 75425..76894 | + | 1470 | WP_044458669.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| UC34_RS24970 () | 76891..77847 | + | 957 | WP_044458670.1 | restriction endonuclease BsuBI | - |
| UC34_RS25580 () | 78136..79476 | - | 1341 | WP_157123393.1 | hypothetical protein | - |
| UC34_RS24985 () | 79732..80775 | - | 1044 | WP_044458671.1 | ParB N-terminal domain-containing protein | - |
| UC34_RS24990 () | 80779..82008 | - | 1230 | WP_044458672.1 | Sporulation initiation inhibitor protein Soj | VF |
| UC34_RS24995 () | 82397..83572 | + | 1176 | WP_044458673.1 | ATP-binding protein | - |
| UC34_RS25000 () | 83860..84153 | - | 294 | WP_044458674.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| UC34_RS25005 () | 84141..84413 | - | 273 | WP_044458675.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| UC34_RS25010 () | 84579..85151 | + | 573 | Protein_83 | Tn3 family transposase ISPsy42 | Transposase |
| UC34_RS25015 () | 85290..86189 | - | 900 | WP_044458676.1 | HTH-type transcriptional regulator ArgP | VF |
| UC34_RS25020 () | 86339..87400 | - | 1062 | WP_157123394.1 | hypothetical protein | - |
| UC34_RS25025 () | 87616..88437 | - | 822 | WP_044453167.1 | IS21 family transposase ISRel5 | Transposase |
| UC34_RS25030 () | 88434..89927 | - | 1494 | WP_044458677.1 | IS21 family transposase ISCARN49 | Transposase |
| UC34_RS25585 () | 90012..90203 | - | 192 | WP_044458678.1 | hypothetical protein | - |
| UC34_RS25035 () | 90219..91175 | - | 957 | WP_084071100.1 | fatty acid desaturase | - |
| UC34_RS25040 () | 91423..91854 | + | 432 | WP_157123395.1 | ACT domain-containing protein | - |
| UC34_RS25045 () | 92745..93851 | - | 1107 | WP_044454374.1 | IS5 family transposase ISBxe5 | Transposase |
| UC34_RS25050 () | 93892..94404 | - | 513 | WP_072617601.1 | IS701 family transposase ISRso17 | Transposase |
| UC34_RS25055 () | 94401..94658 | - | 258 | WP_072617602.1 | transposase | - |
| UC34_RS25060 () | 95054..96169 | + | 1116 | WP_167370707.1 | methyltransferase domain-containing protein | - |
| UC34_RS25065 () | 96166..96984 | + | 819 | WP_044458681.1 | hypothetical protein | - |
| UC34_RS25070 () | 96981..98657 | + | 1677 | WP_044458682.1 | thiamine pyrophosphate-binding protein | - |
| UC34_RS25075 () | 98658..99872 | + | 1215 | WP_044458683.1 | MFS transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|