MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 196361 bp
Accession: NZ_CP010516 Location: 2378755..2575115 Organism: Cupriavidus gilardii CR3 Replicon: chromosome
Accession: NZ_CP010516 Location: 2378755..2575115 Organism: Cupriavidus gilardii CR3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR3_RS10470 () | 2374036..2374824 | - | 789 | WP_053823156.1 | CPBP family intramembrane metalloprotease | - |
| CR3_RS10475 () | 2374824..2375042 | - | 219 | WP_053822229.1 | KTSC domain-containing protein | - |
| CR3_RS10485 () | 2375316..2377895 | - | 2580 | WP_144425818.1 | RNA polymerase sigma factor RpoD | - |
| CR3_RS10490 () | 2378112..2379923 | - | 1812 | WP_053822231.1 | DNA primase | - |
| CR3_RS10495 () | 2380112..2380561 | - | 450 | WP_053822232.1 | hypothetical protein | VF |
| CR3_RS10500 () | 2380714..2380926 | - | 213 | WP_006576196.1 | 30S ribosomal protein S21 | - |
| CR3_RS10505 () | 2380997..2382268 | - | 1272 | WP_053823157.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| CR3_RS10510 () | 2382468..2383502 | + | 1035 | WP_053822233.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| CR3_RS10515 () | 2383648..2384451 | - | 804 | WP_053822234.1 | GTP cyclohydrolase I FolE2 | - |
| CR3_RS26105 () | 2384450..2384590 | + | 141 | WP_158507263.1 | hypothetical protein | - |
| CR3_RS10520 () | 2384658..2386595 | - | 1938 | WP_053822235.1 | 1-deoxy-D-xylulose-5-phosphate synthase | - |
| CR3_RS10525 () | 2386667..2387551 | - | 885 | WP_053822236.1 | polyprenyl synthetase family protein | - |
| CR3_RS10530 () | 2387548..2387832 | - | 285 | WP_053822237.1 | exodeoxyribonuclease VII small subunit | - |
| CR3_RS10535 () | 2388170..2389273 | + | 1104 | WP_053822238.1 | aromatic ring-hydroxylating dioxygenase subunit alpha | - |
| CR3_RS26110 () | 2389464..2389610 | - | 147 | WP_158507264.1 | hypothetical protein | - |
| CR3_RS10540 () | 2389549..2390459 | + | 911 | Protein_2131 | DMT family transporter | - |
| CR3_RS10545 () | 2390650..2391528 | + | 879 | WP_053822239.1 | sulfurtransferase | - |
| CR3_RS10550 () | 2391593..2392437 | - | 845 | Protein_2133 | ZIP family metal transporter | - |
| CR3_RS10555 () | 2392604..2393059 | - | 456 | WP_053822240.1 | hypothetical protein | - |
| CR3_RS10560 () | 2393043..2393618 | - | 576 | WP_144425819.1 | nucleotidyltransferase domain-containing protein | - |
| CR3_RS10565 () | 2393706..2394581 | - | 876 | WP_053822241.1 | dienelactone hydrolase family protein | - |
| CR3_RS10570 () | 2394799..2396127 | - | 1329 | WP_053822242.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| CR3_RS10575 () | 2396255..2399068 | - | 2814 | WP_053822243.1 | DNA polymerase I | - |
| CR3_RS10580 () | 2399321..2400040 | + | 720 | WP_006577073.1 | TIGR00730 family Rossman fold protein | - |
| CR3_RS10585 () | 2400296..2400658 | + | 363 | WP_144425898.1 | hypothetical protein | - |
| CR3_RS10590 () | 2400836..2401819 | + | 984 | WP_053822244.1 | homoserine kinase | - |
| CR3_RS10595 () | 2401887..2402678 | + | 792 | WP_053823160.1 | hypothetical protein | - |
| CR3_RS10600 () | 2402760..2405120 | - | 2361 | WP_053822245.1 | UvrD-helicase domain-containing protein | - |
| CR3_RS10605 () | 2405221..2405919 | - | 699 | WP_158507265.1 | TetR/AcrR family transcriptional regulator | - |
| CR3_RS10610 () | 2406289..2409154 | + | 2866 | Protein_2145 | valine--tRNA ligase | - |
| CR3_RS10615 () | 2409301..2410170 | + | 870 | WP_006578933.1 | Bifunctional protein GlmU | VF |
| CR3_RS10620 () | 2410379..2410605 | - | 227 | Protein_2147 | sulfurtransferase TusA family protein | - |
| CR3_RS10625 () | 2410661..2411248 | - | 588 | WP_053822247.1 | NUDIX hydrolase | - |
| CR3_RS10630 () | 2411317..2412348 | - | 1032 | WP_053822248.1 | low specificity L-threonine aldolase | - |
| CR3_RS10635 () | 2412437..2412625 | - | 189 | WP_006578927.1 | 4-oxalocrotonate tautomerase | - |
| CR3_RS10640 () | 2412680..2413465 | - | 786 | WP_053822249.1 | class II aldolase/adducin family protein | - |
| CR3_RS10645 () | 2413574..2415012 | - | 1439 | Protein_2152 | YbfB/YjiJ family MFS transporter | - |
| CR3_RS10650 () | 2415161..2416702 | + | 1542 | WP_053822250.1 | nodulation protein NfeD | - |
| CR3_RS10655 () | 2416699..2417547 | + | 849 | WP_082371517.1 | slipin family protein | - |
| CR3_RS10660 () | 2417589..2422952 | - | 5364 | WP_053822251.1 | hypothetical protein | - |
| CR3_RS10665 () | 2423244..2424839 | + | 1596 | WP_053822252.1 | ankyrin repeat domain-containing protein | - |
| CR3_RS10670 () | 2424882..2425409 | - | 528 | WP_006577062.1 | inorganic diphosphatase | - |
| CR3_RS10675 () | 2425616..2427052 | + | 1437 | WP_053823161.1 | aldehyde dehydrogenase family protein | - |
| CR3_RS10680 () | 2427045..2427287 | + | 243 | WP_006577064.1 | hypothetical protein | - |
| CR3_RS10685 () | 2427400..2427570 | - | 171 | WP_006577065.1 | rubredoxin | - |
| CR3_RS10690 () | 2427784..2429076 | + | 1293 | WP_053822253.1 | glutamate-1-semialdehyde 2,1-aminomutase | - |
| CR3_RS10695 () | 2429187..2429831 | + | 645 | WP_053822254.1 | LemA family protein | - |
| CR3_RS24980 () | 2429930..2430750 | + | 821 | Protein_2163 | TPM domain-containing protein | - |
| CR3_RS10710 () | 2430762..2431295 | + | 534 | WP_053822257.1 | TPM domain-containing protein | - |
| CR3_RS10715 () | 2431310..2432575 | - | 1266 | WP_053822258.1 | MFS transporter | - |
| CR3_RS10720 () | 2432710..2433642 | + | 933 | WP_053822259.1 | LysR family transcriptional regulator | - |
| CR3_RS10725 () | 2434549..2435925 | + | 1377 | WP_053822260.1 | Anaerobic nitric oxide reductase transcription regulator NorR | VF |
| CR3_RS10730 () | 2435979..2438084 | + | 2106 | WP_053822261.1 | GtrA family protein | - |
| CR3_RS10735 () | 2438094..2438881 | + | 788 | Protein_2169 | class I SAM-dependent methyltransferase | - |
| CR3_RS10740 () | 2438962..2440005 | - | 1044 | WP_053822262.1 | Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | VF |
| CR3_RS10745 () | 2440205..2441533 | - | 1329 | WP_053823162.1 | DUF2029 domain-containing protein | - |
| CR3_RS25710 () | 2441567..2441911 | + | 345 | WP_144425821.1 | hypothetical protein | - |
| CR3_RS10755 () | 2442726..2442899 | + | 174 | WP_006578843.1 | Flp family type IVb pilin | - |
| CR3_RS24985 () | 2442993..2443163 | + | 171 | WP_082371518.1 | Flp family type IVb pilin | - |
| CR3_RS10760 () | 2443217..2443756 | + | 540 | WP_053822264.1 | prepilin peptidase | - |
| CR3_RS10765 () | 2443782..2445221 | + | 1440 | WP_053822265.1 | ATP-binding protein | - |
| CR3_RS10770 () | 2445309..2446160 | + | 852 | WP_053822266.1 | hypothetical protein | VF |
| CR3_RS10775 () | 2446244..2448148 | + | 1905 | Protein_2178 | type II and III secretion system protein family protein | - |
| CR3_RS26355 () | 2448170..2448510 | + | 341 | Protein_2179 | hypothetical protein | - |
| CR3_RS24995 () | 2448578..2449841 | + | 1264 | Protein_2180 | pilus assembly protein TadG | - |
| CR3_RS10790 () | 2449923..2450441 | + | 519 | WP_053822269.1 | pilus assembly protein | - |
| CR3_RS10795 () | 2450438..2450907 | + | 470 | Protein_2182 | pilus assembly protein | - |
| CR3_RS10800 () | 2450969..2452153 | + | 1185 | WP_053822270.1 | AAA family ATPase | - |
| CR3_RS10805 () | 2452321..2453700 | + | 1380 | WP_053822271.1 | hypothetical protein | VF |
| CR3_RS10810 () | 2453713..2454726 | + | 1014 | WP_053822272.1 | type II secretion system F family protein | - |
| CR3_RS10815 () | 2454758..2455708 | + | 951 | WP_193392486.1 | hypothetical protein | VF |
| CR3_RS10820 () | 2455899..2456699 | + | 801 | WP_053822273.1 | metallophosphoesterase family protein | - |
| CR3_RS10825 () | 2456825..2458468 | - | 1644 | WP_053822274.1 | 60 kDa chaperonin | VF |
| CR3_RS10830 () | 2458577..2458867 | - | 291 | WP_053822275.1 | co-chaperone GroES | - |
| CR3_RS10835 () | 2459135..2460190 | - | 1056 | WP_082371519.1 | TIGR03885 family FMN-dependent LLM class oxidoreductase | - |
| CR3_RS10840 () | 2460231..2460629 | - | 399 | WP_053822276.1 | hypothetical protein | - |
| CR3_RS10845 () | 2460679..2462304 | - | 1626 | WP_053822277.1 | alpha-amylase family protein | - |
| CR3_RS10850 () | 2462366..2463973 | - | 1608 | WP_053823163.1 | DUF3459 domain-containing protein | - |
| CR3_RS10855 () | 2464304..2464594 | - | 291 | WP_053822278.1 | hypothetical protein | - |
| CR3_RS10860 () | 2464813..2465343 | + | 531 | WP_053822279.1 | hypothetical protein | - |
| CR3_RS10865 () | 2465444..2467708 | - | 2265 | WP_053822280.1 | xanthine dehydrogenase family protein molybdopterin-binding subunit | - |
| CR3_RS10870 () | 2467728..2468186 | - | 459 | WP_053822281.1 | (2Fe-2S)-binding protein | - |
| CR3_RS10875 () | 2468500..2469633 | - | 1134 | WP_053822282.1 | hypothetical protein | - |
| CR3_RS10880 () | 2469899..2470309 | - | 411 | WP_053822283.1 | hypothetical protein | - |
| CR3_RS10885 () | 2470940..2474380 | + | 3441 | WP_053822284.1 | diguanylate cyclase | - |
| CR3_RS10890 () | 2474409..2476265 | - | 1857 | WP_053822285.1 | hypothetical protein | - |
| CR3_RS10895 () | 2476596..2477108 | + | 513 | WP_053822286.1 | DUF861 domain-containing protein | - |
| CR3_RS10900 () | 2477536..2478846 | + | 1311 | WP_053822287.1 | dicarboxylate/amino acid:cation symporter | - |
| CR3_RS10905 () | 2479171..2481027 | + | 1857 | WP_053823164.1 | sensor histidine kinase | - |
| CR3_RS10910 () | 2481008..2482336 | + | 1329 | WP_053822288.1 | Anaerobic nitric oxide reductase transcription regulator NorR | VF |
| CR3_RS10915 () | 2482391..2483749 | - | 1359 | WP_053822289.1 | hypothetical protein | VF |
| CR3_RS10920 () | 2483845..2485773 | - | 1929 | WP_082371520.1 | capsular polysaccharide biosynthesis protein | - |
| CR3_RS26115 () | 2485943..2486461 | - | 519 | WP_158507266.1 | tetratricopeptide repeat protein | - |
| CR3_RS26120 () | 2486785..2487321 | - | 537 | WP_158507267.1 | hypothetical protein | - |
| CR3_RS25005 () | 2487318..2488643 | - | 1326 | WP_082371521.1 | glycosyltransferase | - |
| CR3_RS25010 () | 2489293..2491683 | - | 2391 | WP_158507268.1 | hypothetical protein | VF |
| CR3_RS10930 () | 2491865..2493517 | - | 1653 | WP_144425899.1 | hypothetical protein | VF |
| CR3_RS10935 () | 2493697..2494788 | - | 1092 | WP_053822291.1 | hypothetical protein | VF |
| CR3_RS10940 () | 2494785..2495447 | - | 663 | WP_053822292.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| CR3_RS10945 () | 2495444..2496238 | - | 795 | WP_053822293.1 | hypothetical protein | VF |
| CR3_RS10950 () | 2496235..2497233 | - | 999 | WP_082371524.1 | Inosine-5'-monophosphate dehydrogenase | VF |
| CR3_RS10955 () | 2497732..2498040 | + | 309 | WP_053822295.1 | hypothetical protein | - |
| CR3_RS10960 () | 2498037..2499113 | - | 1077 | WP_053822296.1 | ornithine cyclodeaminase | - |
| CR3_RS10965 () | 2499155..2500075 | - | 921 | WP_053822297.1 | amidinotransferase | - |
| CR3_RS10970 () | 2500250..2500672 | + | 423 | WP_053822298.1 | Lrp/AsnC family transcriptional regulator | - |
| CR3_RS10975 () | 2500856..2501515 | + | 660 | WP_053823167.1 | paraquat-inducible protein A | - |
| CR3_RS10980 () | 2501512..2502237 | + | 726 | Protein_2222 | paraquat-inducible protein A | - |
| CR3_RS10985 () | 2502396..2504042 | + | 1647 | WP_053822299.1 | hypothetical protein | VF |
| CR3_RS10990 () | 2504081..2504797 | + | 717 | WP_053823168.1 | PqiC family protein | - |
| CR3_RS10995 () | 2504811..2505323 | - | 513 | WP_053822300.1 | nucleoside 2-deoxyribosyltransferase | - |
| CR3_RS11000 () | 2505532..2506473 | + | 942 | WP_053822301.1 | 2-hydroxyacid dehydrogenase | - |
| CR3_RS11005 () | 2506576..2507076 | + | 501 | WP_053822302.1 | helix-turn-helix transcriptional regulator | - |
| CR3_RS11010 () | 2507263..2508075 | + | 813 | WP_170265945.1 | molybdate ABC transporter substrate-binding protein | - |
| CR3_RS11015 () | 2508098..2508769 | + | 672 | WP_053822303.1 | molybdate ABC transporter permease subunit | - |
| CR3_RS11020 () | 2508841..2509518 | + | 678 | WP_053822304.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| CR3_RS11025 () | 2509615..2510433 | - | 819 | WP_053822305.1 | TOBE domain-containing protein | - |
| CR3_RS11030 () | 2510615..2511751 | + | 1137 | WP_053822306.1 | HPP family protein | - |
| CR3_RS11035 () | 2512065..2512759 | + | 695 | Protein_2233 | transglycosylase domain-containing protein | - |
| CR3_RS11040 () | 2512910..2513377 | + | 468 | WP_053822307.1 | hypothetical protein | VF |
| CR3_RS25015 () | 2513521..2513802 | + | 282 | WP_082371643.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CR3_RS11045 () | 2513834..2514148 | + | 315 | WP_053823170.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| CR3_RS11050 () | 2514204..2514425 | - | 222 | WP_053822308.1 | formate dehydrogenase subunit delta | - |
| CR3_RS11055 () | 2514428..2515234 | - | 807 | WP_053823171.1 | formate dehydrogenase accessory sulfurtransferase FdhD | - |
| CR3_RS11060 () | 2515338..2518220 | - | 2883 | WP_053822309.1 | formate dehydrogenase subunit alpha | - |
| CR3_RS11065 () | 2518280..2519875 | - | 1596 | WP_193392487.1 | formate dehydrogenase beta subunit | - |
| CR3_RS11070 () | 2519872..2520462 | - | 591 | WP_053822311.1 | formate dehydrogenase subunit gamma | - |
| CR3_RS11075 () | 2520583..2521673 | + | 1091 | Protein_2242 | helix-turn-helix transcriptional regulator | - |
| CR3_RS11080 () | 2521713..2522642 | - | 930 | WP_053822312.1 | polyphosphate kinase 2 | - |
| CR3_RS11085 () | 2522773..2523726 | - | 954 | WP_053823172.1 | LysR family transcriptional regulator | - |
| CR3_RS11090 () | 2523950..2527581 | + | 3632 | Protein_2245 | indolepyruvate ferredoxin oxidoreductase family protein | - |
| CR3_RS11095 () | 2527705..2529717 | - | 2013 | WP_053823173.1 | 3-isopropylmalate dehydratase | - |
| CR3_RS11100 () | 2529975..2530889 | + | 915 | WP_053822313.1 | LysR family transcriptional regulator | - |
| CR3_RS11105 () | 2531078..2532100 | + | 1023 | WP_053822314.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| CR3_RS11110 () | 2532267..2532848 | - | 582 | WP_053822315.1 | hypothetical protein | VF |
| CR3_RS11115 () | 2533055..2534440 | - | 1386 | WP_082371525.1 | exodeoxyribonuclease VII large subunit | - |
| CR3_RS11120 () | 2535404..2536024 | + | 621 | WP_053822317.1 | hypothetical protein | VF |
| CR3_RS11125 () | 2536040..2536468 | + | 429 | WP_053823174.1 | biopolymer transporter ExbD | - |
| CR3_RS11130 () | 2536690..2537805 | + | 1116 | WP_053822318.1 | Tetraacyldisaccharide 4'-kinase | VF |
| CR3_RS11135 () | 2537786..2537974 | + | 189 | WP_006579104.1 | Trm112 family protein | - |
| CR3_RS11140 () | 2537986..2538795 | + | 810 | WP_053822319.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | VF |
| CR3_RS11145 () | 2539140..2539805 | + | 666 | WP_053822320.1 | adenylate kinase | - |
| CR3_RS11150 () | 2539881..2541608 | - | 1728 | WP_053822321.1 | hypothetical protein | - |
| CR3_RS11155 () | 2541958..2542716 | + | 759 | WP_053822322.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| CR3_RS11160 () | 2542926..2544797 | + | 1872 | WP_144425825.1 | hypothetical protein | VF |
| CR3_RS11165 () | 2545058..2545951 | - | 894 | WP_053822323.1 | HTH-type transcriptional regulator ArgP | VF |
| CR3_RS11170 () | 2546115..2547134 | + | 1020 | WP_053822324.1 | bile acid:sodium symporter | - |
| CR3_RS11175 () | 2547307..2548827 | - | 1521 | WP_053822325.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CR3_RS11180 () | 2548821..2549333 | - | 513 | WP_053822326.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| CR3_RS11185 () | 2549350..2550558 | + | 1209 | WP_053822327.1 | tRNA epoxyqueuosine(34) reductase QueG | - |
| CR3_RS11190 () | 2550629..2551522 | - | 894 | WP_053822328.1 | AEC family transporter | - |
| CR3_RS11195 () | 2551758..2552399 | + | 642 | WP_082371528.1 | chalcone isomerase family protein | - |
| CR3_RS11200 () | 2552512..2553483 | + | 972 | WP_053822329.1 | tripartite tricarboxylate transporter substrate binding protein BugE | - |
| CR3_RS11205 () | 2553739..2554197 | + | 459 | WP_053823176.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| CR3_RS11210 () | 2554290..2555186 | + | 897 | WP_053823177.1 | Tyrosine recombinase XerD | VF |
| CR3_RS11215 () | 2555204..2555698 | + | 495 | WP_006579148.1 | Cys-tRNA(Pro) deacylase | - |
| CR3_RS11220 () | 2555855..2556478 | + | 624 | WP_053822330.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| CR3_RS11225 () | 2556558..2557835 | - | 1278 | WP_053822331.1 | HAMP domain-containing protein | - |
| CR3_RS11230 () | 2557832..2558572 | - | 741 | WP_053822332.1 | Regulator of RpoS | VF |
| CR3_RS11235 () | 2559041..2560429 | + | 1389 | WP_144425826.1 | Multidrug resistance protein MdtA | VF |
| CR3_RS11240 () | 2560448..2563606 | + | 3159 | WP_053822333.1 | Multidrug resistance protein MdtB | VF |
| CR3_RS11245 () | 2563603..2566943 | + | 3341 | Protein_2276 | efflux RND transporter permease subunit | - |
| CR3_RS11250 () | 2566946..2568412 | + | 1467 | WP_053822334.1 | hypothetical protein | VF |
| CR3_RS11255 () | 2568449..2569363 | - | 915 | WP_053822335.1 | HTH-type transcriptional regulator HdfR | VF |
| CR3_RS11260 () | 2569513..2569965 | + | 453 | WP_053822336.1 | PACE efflux transporter | - |
| CR3_RS11265 () | 2570123..2570335 | - | 213 | WP_006579879.1 | hypothetical protein | - |
| CR3_RS11270 () | 2570528..2571307 | + | 780 | WP_053822337.1 | hypothetical protein | - |
| CR3_RS11275 () | 2571403..2572665 | + | 1263 | WP_053822338.1 | Kynurenine 3-monooxygenase | VF |
| CR3_RS11280 () | 2572700..2573859 | + | 1160 | Protein_2283 | ABC transporter substrate-binding protein | - |
| CR3_RS11285 () | 2573856..2574364 | + | 509 | Protein_2284 | DUF3237 domain-containing protein | - |
| CR3_RS11290 () | 2574369..2574936 | + | 568 | Protein_2285 | MarR family transcriptional regulator | - |
| CR3_RS11295 () | 2575072..2576169 | + | 1098 | WP_144425827.1 | hypothetical protein | - |
| CR3_RS11300 () | 2576308..2576751 | + | 444 | WP_144425828.1 | hypothetical protein | - |
| CR3_RS11305 () | 2576962..2577783 | + | 822 | WP_053822341.1 | hypothetical protein | - |
| CR3_RS11310 () | 2577921..2579498 | + | 1578 | WP_053822342.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|