MGE detailed information
MGE type: Prophage MGE length: 74632 bp
Accession: NZ_CP010443 Location: 982037..1056668 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010443 Location: 982037..1056668 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH04_RS04710 () | 977480..979198 | - | 1719 | WP_001260717.1 | proline--tRNA ligase | - |
| SH04_RS04715 () | 979310..980017 | - | 708 | WP_000094011.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| SH04_RS04720 () | 980014..980418 | - | 405 | WP_001202329.1 | Rcs stress response system protein RcsF | - |
| SH04_RS04725 () | 980536..981351 | - | 816 | WP_000874226.1 | methionine ABC transporter substrate-binding lipoprotein MetQ | - |
| SH04_RS04730 () | 981391..982044 | - | 654 | WP_001294600.1 | methionine ABC transporter permease MetI | - |
| SH04_RS04735 () | 982037..983068 | - | 1032 | WP_000594006.1 | hypothetical protein | VF |
| SH04_RS04740 () | 983256..983831 | + | 576 | WP_001140187.1 | hypothetical protein | VF |
| SH04_RS04775 () | 989590..990393 | + | 804 | WP_000997010.1 | 2,5-didehydrogluconate reductase DkgB | - |
| SH04_RS04780 () | 990390..991304 | - | 915 | WP_000648572.1 | hypothetical protein | VF |
| SH04_RS04785 () | 991545..992345 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| SH04_RS04790 () | 992376..992972 | + | 597 | Protein_882 | methyltransferase domain-containing protein | - |
| SH04_RS04795 () | 993020..994378 | - | 1359 | WP_000644685.1 | hypothetical protein | VF |
| SH04_RS04800 () | 994450..995205 | - | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| SH04_RS04805 () | 995239..995961 | + | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| SH04_RS04810 () | 995958..996425 | - | 468 | WP_000917883.1 | ribonuclease HI | - |
| SH04_RS04815 () | 996490..997221 | + | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| SH04_RS04825 () | 997758..998543 | + | 786 | WP_001086141.1 | lipoprotein | - |
| SH04_RS04830 () | 998680..999159 | - | 480 | WP_001236645.1 | hypothetical protein | - |
| SH04_RS04835 () | 999169..999525 | - | 357 | Protein_890 | hypothetical protein | - |
| SH04_RS25380 () | 999523..999801 | + | 279 | Protein_891 | ISAs1 family transposase | - |
| SH04_RS04845 () | 999842..1000612 | - | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| SH04_RS04850 () | 1000793..1001239 | + | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| SH04_RS04855 () | 1001282..1003726 | - | 2445 | WP_000973083.1 | hypothetical protein | VF |
| SH04_RS04860 () | 1003966..1004544 | + | 579 | WP_000284050.1 | hypothetical protein | VF |
| SH04_RS04865 () | 1004750..1005517 | + | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| SH04_RS04870 () | 1005488..1006228 | - | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| SH04_RS04875 () | 1006384..1006662 | - | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| SH04_RS04880 () | 1006665..1006925 | - | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| SH04_RS04885 () | 1007135..1007884 | + | 750 | WP_000056849.1 | hypothetical protein | VF |
| SH04_RS04890 () | 1008060..1008557 | + | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| SH04_RS04895 () | 1008781..1010493 | - | 1713 | Protein_902 | hypothetical protein | VF |
| SH04_RS04900 () | 1010465..1011250 | + | 786 | WP_000207552.1 | hypothetical protein | VF |
| SH04_RS04905 () | 1011321..1012376 | + | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| SH04_RS04910 () | 1012428..1012721 | + | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| SH04_RS04915 () | 1012724..1013122 | + | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| SH04_RS04920 () | 1013132..1013584 | + | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| SH04_RS04925 () | 1013902..1014108 | + | 207 | Protein_908 | RtcB family protein | - |
| SH04_RS04930 () | 1014104..1014625 | + | 522 | Protein_909 | peptide chain release factor H | - |
| SH04_RS04935 () | 1014682..1016139 | - | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| SH04_RS04940 () | 1016400..1016858 | + | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| SH04_RS04945 () | 1016950..1018194 | + | 1245 | WP_000189532.1 | esterase FrsA | - |
| - () | 1017454..1017534 | + | 81 | NuclAT_12 | - | - |
| - () | 1017454..1017534 | + | 81 | NuclAT_12 | - | - |
| - () | 1017454..1017534 | + | 81 | NuclAT_12 | - | - |
| - () | 1017454..1017534 | + | 81 | NuclAT_12 | - | - |
| SH04_RS04950 () | 1018252..1018653 | + | 402 | WP_000174689.1 | sigma factor-binding protein Crl | - |
| SH04_RS04955 () | 1018692..1019747 | - | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| SH04_RS04960 () | 1020035..1021138 | + | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| SH04_RS04965 () | 1021150..1022403 | + | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| SH04_RS04975 () | 1022975..1023316 | - | 342 | WP_000854672.1 | type IV toxin-antitoxin system toxin YkfI | Toxin Detail |
| SH04_RS04980 () | 1023337..1023654 | - | 318 | WP_000070395.1 | type IV toxin-antitoxin system antitoxin YafW | Antitoxin Detail |
| SH04_RS23435 () | 1023673..1023894 | - | 222 | WP_000691994.1 | DUF987 domain-containing protein | - |
| SH04_RS04985 () | 1023903..1024379 | - | 477 | WP_000811693.1 | RadC family protein | - |
| SH04_RS04990 () | 1024395..1024853 | - | 459 | WP_000211838.1 | antirestriction protein | - |
| SH04_RS04995 () | 1024951..1025190 | - | 240 | WP_000194654.1 | DUF905 domain-containing protein | - |
| SH04_RS05000 () | 1025267..1025734 | - | 468 | WP_001547765.1 | hypothetical protein | - |
| SH04_RS25385 () | 1025757..1026200 | - | 444 | WP_000824223.1 | hypothetical protein | - |
| SH04_RS25390 () | 1026200..1026427 | - | 228 | WP_001548158.1 | hypothetical protein | - |
| SH04_RS25395 () | 1026423..1026614 | - | 192 | Protein_926 | DeoR family transcriptional regulator | - |
| SH04_RS05015 () | 1026831..1027652 | - | 822 | WP_000197389.1 | DUF945 domain-containing protein | - |
| SH04_RS05020 () | 1027744..1028607 | - | 864 | WP_001065553.1 | GTPase family protein | - |
| SH04_RS05025 () | 1028936..1029829 | - | 894 | WP_000770246.1 | LysR family transcriptional regulator | - |
| SH04_RS05030 () | 1029925..1030182 | + | 258 | Protein_930 | IS3 family transposase ISEc52 | Transposase |
| SH04_RS05035 () | 1030250..1031401 | + | 1152 | WP_001254938.1 | IS30 family transposase IS30D | Transposase |
| SH04_RS05040 () | 1031411..1031836 | + | 426 | Protein_932 | IS3 family transposase | - |
| SH04_RS05055 () | 1032509..1033600 | + | 1092 | Protein_933 | group II intron reverse transcriptase/maturase | - |
| SH04_RS05060 () | 1033748..1034764 | - | 1017 | WP_010723085.1 | IS5 family transposase IS5D | Transposase |
| SH04_RS05065 () | 1034972..1036375 | + | 1404 | WP_001393629.1 | S-methylmethionine permease | - |
| SH04_RS05070 () | 1036362..1037294 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| SH04_RS05075 () | 1037403..1038449 | - | 1047 | WP_000192349.1 | hypothetical protein | VF |
| SH04_RS05080 () | 1038461..1038808 | - | 348 | Protein_938 | ABC transporter permease subunit | - |
| SH04_RS05085 () | 1038825..1039522 | - | 698 | Protein_939 | IS1 family transposase IS1R | Transposase |
| SH04_RS23460 () | 1039578..1039751 | + | 174 | Protein_940 | IS30 family transposase | - |
| SH04_RS05095 () | 1039761..1040009 | - | 249 | Protein_941 | IS3 family transposase ISEhe3 | Transposase |
| SH04_RS05100 () | 1040032..1040382 | - | 351 | WP_001030800.1 | type IV toxin-antitoxin system antitoxin YagB | - |
| SH04_RS05105 () | 1040476..1041630 | - | 1155 | WP_010723086.1 | IS481 family transposase ISEc19 | Transposase |
| SH04_RS05110 () | 1041925..1042833 | + | 909 | WP_001136613.1 | 2-keto-3-deoxygluconate aldolase | - |
| SH04_RS05115 () | 1042848..1044815 | + | 1968 | WP_000151261.1 | xylonate dehydratase YagF | - |
| SH04_RS05120 () | 1045042..1046424 | + | 1383 | WP_000192863.1 | MFS transporter | - |
| SH04_RS05125 () | 1046436..1048046 | + | 1611 | WP_000406871.1 | glycoside hydrolase family 43 protein | - |
| SH04_RS05130 () | 1048051..1048809 | - | 759 | WP_001121657.1 | DNA-binding transcriptional repressor XynR | - |
| SH04_RS05135 () | 1048948..1049952 | - | 1005 | WP_001281825.1 | hypothetical protein | VF |
| SH04_RS23465 () | 1050076..1050279 | + | 204 | Protein_950 | DUF3987 domain-containing protein | - |
| SH04_RS05140 () | 1050296..1050993 | - | 698 | Protein_951 | IS1 family transposase | - |
| SH04_RS05145 () | 1051048..1051878 | + | 831 | Protein_952 | type III restriction endonuclease subunit R | - |
| SH04_RS05150 () | 1051969..1052595 | - | 627 | WP_000860996.1 | inovirus Gp2 family protein | - |
| SH04_RS05155 () | 1052867..1053565 | - | 699 | WP_001214248.1 | recombinase family protein | - |
| SH04_RS05160 () | 1053592..1054446 | - | 855 | WP_000072039.1 | hypothetical protein | - |
| SH04_RS05165 () | 1054565..1054789 | - | 225 | WP_001272156.1 | helix-turn-helix domain-containing protein | - |
| SH04_RS05170 () | 1054786..1055226 | - | 441 | WP_000224818.1 | hypothetical protein | - |
| SH04_RS05175 () | 1055343..1056743 | - | 1401 | WP_001407714.1 | hypothetical protein ; Integrase | Integrase |
| SH04_RS05185 () | 1057028..1057366 | - | 339 | Protein_959 | LysR family transcriptional regulator | - |
| SH04_RS05190 () | 1057417..1058373 | - | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| SH04_RS05195 () | 1058383..1060581 | - | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| SH04_RS05200 () | 1060578..1061534 | - | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|