MGE detailed information
MGE type: Genomic_island MGE length: 26985 bp
Accession: NZ_CP010443 Location: 3999305..4026289 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010443 Location: 3999305..4026289 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH04_RS19725 () | 3994590..3995954 | - | 1365 | WP_000622126.1 | L-serine ammonia-lyase | - |
| SH04_RS19730 () | 3996026..3996415 | - | 390 | WP_000719990.1 | enamine/imine deaminase | - |
| SH04_RS19735 () | 3996429..3998723 | - | 2295 | WP_000861734.1 | 2-ketobutyrate formate-lyase/pyruvate formate-lyase | - |
| SH04_RS24560 () | 3998757..3999158 | - | 402 | Protein_3731 | propionate/acetate kinase | - |
| SH04_RS19745 () | 3999305..4000321 | - | 1017 | WP_010723085.1 | IS5 family transposase IS5D | Transposase |
| SH04_RS19750 () | 4000352..4001164 | - | 813 | Protein_3733 | acetate/propionate family kinase | - |
| SH04_RS19755 () | 4001190..4002521 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| SH04_RS19760 () | 4002543..4003532 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| SH04_RS19765 () | 4003631..4004569 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| SH04_RS25920 () | 4004884..4005102 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| SH04_RS19775 () | 4005358..4005897 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| SH04_RS19780 () | 4005919..4007106 | + | 1188 | WP_000484600.1 | YhaC family protein | - |
| SH04_RS19785 () | 4008129..4009274 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| SH04_RS19790 () | 4009371..4010261 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| SH04_RS19795 () | 4010291..4011061 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| SH04_RS19800 () | 4011077..4012411 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| SH04_RS19805 () | 4012786..4014357 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| SH04_RS19810 () | 4014506..4014841 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| SH04_RS19815 () | 4014841..4015305 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| SH04_RS19820 () | 4015360..4016169 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| SH04_RS19825 () | 4016418..4017698 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| SH04_RS19830 () | 4017721..4018194 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| SH04_RS19835 () | 4018205..4018576 | + | 372 | Protein_3750 | PTS sugar transporter subunit IIC | - |
| SH04_RS19840 () | 4018572..4019129 | + | 558 | Protein_3751 | amidohydrolase family protein | - |
| SH04_RS19845 () | 4019480..4020634 | + | 1155 | WP_001114869.1 | AgaS family sugar isomerase | - |
| SH04_RS19850 () | 4020647..4021507 | + | 861 | WP_000022766.1 | tagatose-bisphosphate aldolase subunit KbaY | - |
| SH04_RS19855 () | 4021674..4022150 | + | 477 | WP_000203711.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| SH04_RS19860 () | 4022189..4022992 | + | 804 | WP_000544489.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| SH04_RS19865 () | 4022982..4023773 | + | 792 | WP_000534347.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| SH04_RS19870 () | 4023774..4024529 | + | 756 | WP_077782073.1 | galactosamine-6-phosphate isomerase | - |
| SH04_RS19875 () | 4024930..4025514 | + | 585 | WP_001045432.1 | type 1 fimbrial protein | - |
| SH04_RS19880 () | 4025594..4026289 | + | 696 | WP_000044775.1 | hypothetical protein | VF |
| SH04_RS19885 () | 4026318..4028834 | + | 2517 | WP_001355538.1 | fimbrial biogenesis outer membrane usher protein | - |
| SH04_RS19890 () | 4028845..4029936 | + | 1092 | WP_000816992.1 | fimbrial protein | - |
| SH04_RS19895 () | 4029979..4030839 | - | 861 | WP_000809262.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|