MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 109825 bp
Accession: NZ_CP010411 Location: 1817566..1927390 Organism: Bifidobacterium longum subsp. infantis strain BT1 Replicon: chromosome
Accession: NZ_CP010411 Location: 1817566..1927390 Organism: Bifidobacterium longum subsp. infantis strain BT1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RY67_RS07660 () | 1813554..1814678 | - | 1125 | WP_007054423.1 | ROK family transcriptional regulator | - |
| RY67_RS07665 () | 1815016..1815828 | + | 813 | WP_007057381.1 | glucosamine-6-phosphate deaminase | - |
| RY67_RS07670 () | 1815884..1817167 | + | 1284 | WP_060620877.1 | N-acetylglucosamine-6-phosphate deacetylase | - |
| RY67_RS07675 () | 1817447..1819081 | + | 1635 | WP_060620878.1 | ABC transporter substrate-binding protein | - |
| RY67_RS07680 () | 1819245..1820336 | + | 1092 | WP_007052566.1 | ABC transporter permease | - |
| RY67_RS07685 () | 1820338..1821507 | + | 1170 | WP_007052567.1 | ABC transporter permease | - |
| RY67_RS07690 () | 1821511..1823220 | + | 1710 | WP_007052568.1 | Glutathione import ATP-binding protein GsiA | VF |
| RY67_RS07695 () | 1823270..1823791 | - | 522 | WP_013140948.1 | NUDIX domain-containing protein | - |
| RY67_RS07700 () | 1823934..1825535 | - | 1602 | WP_060620879.1 | aminopeptidase P family protein | - |
| RY67_RS07705 () | 1825839..1826690 | - | 852 | WP_007057256.1 | hypothetical protein | - |
| RY67_RS07710 () | 1827945..1829528 | + | 1584 | WP_041081007.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| RY67_RS07715 () | 1829589..1833266 | + | 3678 | WP_060620880.1 | chromosome segregation protein SMC | - |
| RY67_RS07720 () | 1833385..1834380 | - | 996 | WP_007055266.1 | GNAT family N-acetyltransferase | - |
| RY67_RS07725 () | 1834502..1836055 | - | 1554 | WP_060620881.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| RY67_RS07730 () | 1836194..1836982 | + | 789 | WP_060620882.1 | sigma-70 family RNA polymerase sigma factor | - |
| RY67_RS07735 () | 1836982..1837302 | + | 321 | WP_007054435.1 | hypothetical protein | - |
| RY67_RS07740 () | 1837568..1838512 | - | 945 | WP_060620883.1 | aldose 1-epimerase family protein | - |
| RY67_RS07745 () | 1838637..1839593 | - | 957 | WP_060620884.1 | aldose 1-epimerase family protein | - |
| RY67_RS07750 () | 1839864..1840877 | + | 1014 | WP_082248083.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| RY67_RS07755 () | 1840917..1841426 | - | 510 | WP_029679435.1 | Cys-tRNA(Pro) deacylase | - |
| RY67_RS07760 () | 1841519..1842577 | - | 1059 | WP_003830594.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| RY67_RS07765 () | 1842818..1843543 | - | 726 | WP_007054441.1 | thiamine diphosphokinase | - |
| RY67_RS07770 () | 1843775..1844779 | + | 1005 | WP_007054442.1 | fused MFS/spermidine synthase | - |
| RY67_RS07775 () | 1845064..1845786 | + | 723 | WP_032682519.1 | translation initiation factor IF-3 | - |
| RY67_RS07780 () | 1845767..1845961 | + | 195 | WP_007052593.1 | 50S ribosomal protein L35 | - |
| RY67_RS07785 () | 1846014..1846397 | + | 384 | WP_007052594.1 | 50S ribosomal protein L20 | - |
| RY67_RS07790 () | 1846467..1847393 | + | 927 | WP_012471804.1 | Tyrosine recombinase XerD | VF |
| RY67_RS07795 () | 1847521..1850367 | + | 2847 | WP_060620886.1 | putative ABC transporter ATP-binding protein YknY | VF |
| RY67_RS07800 () | 1850629..1851468 | + | 840 | WP_007052597.1 | hypothetical protein | VF |
| RY67_RS07805 () | 1851487..1852401 | + | 915 | WP_082248084.1 | segregation/condensation protein A | - |
| RY67_RS07810 () | 1852414..1853130 | + | 717 | WP_082248085.1 | SMC-Scp complex subunit ScpB | - |
| RY67_RS07815 () | 1853262..1854089 | + | 828 | WP_060620888.1 | NUDIX hydrolase | - |
| RY67_RS07820 () | 1854149..1855429 | + | 1281 | WP_007052601.1 | quinolinate synthase NadA | - |
| RY67_RS07825 () | 1855521..1857152 | + | 1632 | WP_060620889.1 | L-aspartate oxidase | - |
| RY67_RS07830 () | 1857156..1858049 | + | 894 | WP_060620890.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| RY67_RS07835 () | 1858052..1859299 | + | 1248 | WP_060620891.1 | cysteine desulfurase | - |
| RY67_RS07840 () | 1859485..1861416 | + | 1932 | WP_012577281.1 | GTP-binding protein TypA/BipA | VF |
| RY67_RS11700 () | 1861599..1863006 | - | 1408 | Protein_1541 | MFS transporter | - |
| RY67_RS07850 () | 1863537..1863983 | + | 447 | WP_060620892.1 | hypothetical protein | - |
| RY67_RS07855 () | 1864063..1865040 | + | 978 | WP_007054454.1 | chorismate mutase | - |
| RY67_RS07860 () | 1865034..1866098 | + | 1065 | WP_012577286.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| RY67_RS07865 () | 1866308..1866565 | + | 258 | WP_007052610.1 | hypothetical protein | - |
| RY67_RS07870 () | 1866600..1867661 | + | 1062 | WP_060620893.1 | Tyrosine recombinase XerC | VF |
| RY67_RS07875 () | 1867915..1869555 | + | 1641 | WP_060620894.1 | ABC transporter substrate-binding protein | - |
| RY67_RS07880 () | 1869856..1870782 | + | 927 | WP_060620895.1 | ABC transporter permease | - |
| RY67_RS07885 () | 1870803..1871807 | + | 1005 | WP_060620896.1 | ABC transporter permease | - |
| RY67_RS07890 () | 1871830..1873839 | + | 2010 | WP_060620897.1 | Glutathione import ATP-binding protein GsiA | VF |
| RY67_RS07895 () | 1874148..1875008 | - | 861 | WP_060620898.1 | exodeoxyribonuclease III | - |
| RY67_RS07900 () | 1875133..1875987 | + | 855 | WP_060620899.1 | DUF3710 domain-containing protein | - |
| RY67_RS07905 () | 1876003..1876782 | + | 780 | WP_060620900.1 | DUF3159 domain-containing protein | - |
| RY67_RS07910 () | 1876772..1878040 | + | 1269 | WP_060620901.1 | class I SAM-dependent RNA methyltransferase | - |
| RY67_RS07915 () | 1878052..1878747 | + | 696 | WP_060620902.1 | hypothetical protein | - |
| RY67_RS07920 () | 1878838..1881414 | + | 2577 | WP_060620903.1 | HAD-IC family P-type ATPase | - |
| RY67_RS07925 () | 1881535..1884234 | + | 2700 | WP_060620904.1 | aconitate hydratase AcnA | - |
| RY67_RS07930 () | 1884380..1884742 | + | 363 | WP_060620905.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| RY67_RS07935 () | 1884742..1885233 | + | 492 | WP_060620906.1 | PIN domain-containing protein | Toxin Detail |
| RY67_RS07940 () | 1885294..1887399 | - | 2106 | WP_060620907.1 | DUF262 domain-containing protein | - |
| RY67_RS07945 () | 1887488..1888129 | - | 642 | WP_013140893.1 | GNAT family N-acetyltransferase | - |
| RY67_RS11705 () | 1888170..1888310 | - | 141 | Protein_1562 | DNA-binding response regulator | - |
| RY67_RS07950 () | 1888479..1889381 | + | 903 | WP_032745207.1 | Bax inhibitor-1/YccA family protein | - |
| RY67_RS07955 () | 1889521..1890537 | + | 1017 | WP_060620908.1 | DMT family transporter | - |
| RY67_RS07960 () | 1890571..1891311 | - | 741 | WP_080771594.1 | GTP pyrophosphokinase YwaC | VF |
| RY67_RS07965 () | 1891458..1892642 | - | 1185 | WP_060620909.1 | IS256 family transposase ISBlo5 | Transposase |
| RY67_RS12570 () | 1892887..1893057 | + | 171 | WP_158082793.1 | hypothetical protein | - |
| RY67_RS07970 () | 1893130..1893969 | + | 840 | WP_060620910.1 | phosphotransferase | - |
| RY67_RS12245 () | 1893966..1894724 | + | 759 | WP_129558979.1 | hypothetical protein | - |
| RY67_RS07975 () | 1895529..1896107 | + | 579 | WP_060620911.1 | flavoprotein | - |
| RY67_RS12250 () | 1896120..1896707 | + | 588 | WP_129558980.1 | hypothetical protein | - |
| RY67_RS07980 () | 1896711..1897712 | + | 1002 | WP_060620912.1 | methyltransferase domain-containing protein | - |
| RY67_RS07985 () | 1897726..1899351 | + | 1626 | WP_060620913.1 | ATP-binding cassette domain-containing protein | - |
| RY67_RS07990 () | 1899805..1900839 | + | 1035 | WP_129559015.1 | IS30 family transposase ISBlo4 | Transposase |
| RY67_RS07995 () | 1901116..1902315 | + | 1200 | WP_060620914.1 | IS110 family transposase ISArsp5 | Transposase |
| RY67_RS08000 () | 1902490..1903944 | + | 1455 | WP_060620915.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| RY67_RS08005 () | 1903954..1904940 | + | 987 | WP_012577307.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| RY67_RS08010 () | 1904974..1905723 | - | 750 | WP_014484740.1 | putative adenosine monophosphate-protein transferase fic | VF |
| RY67_RS08015 () | 1905936..1908845 | + | 2910 | WP_060620916.1 | DNA translocase FtsK | - |
| RY67_RS08020 () | 1909025..1909660 | + | 636 | WP_060620917.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| RY67_RS08025 () | 1909672..1910205 | + | 534 | WP_060620918.1 | CinA family protein | - |
| RY67_RS08030 () | 1910265..1910780 | + | 516 | WP_077323764.1 | helix-turn-helix transcriptional regulator | - |
| RY67_RS08035 () | 1910892..1911125 | + | 234 | WP_032745197.1 | DUF3046 domain-containing protein | - |
| RY67_RS08040 () | 1911426..1912619 | + | 1194 | WP_060621613.1 | recombinase RecA | - |
| RY67_RS08045 () | 1912622..1913215 | + | 594 | WP_060620919.1 | RecX family transcriptional regulator | - |
| RY67_RS08055 () | 1914073..1914735 | + | 663 | WP_060620920.1 | ribosome-associated translation inhibitor RaiA | - |
| RY67_RS08060 () | 1914897..1917791 | + | 2895 | WP_060620921.1 | preprotein translocase subunit SecA | - |
| RY67_RS08065 () | 1917918..1918550 | - | 633 | WP_060620922.1 | GDSL family lipase | - |
| RY67_RS08070 () | 1918774..1919820 | + | 1047 | WP_060620923.1 | anthranilate phosphoribosyltransferase | - |
| RY67_RS08075 () | 1919817..1920473 | - | 657 | WP_060620924.1 | hypothetical protein | - |
| RY67_RS08080 () | 1920534..1921235 | + | 702 | WP_012577321.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| RY67_RS08085 () | 1921279..1923552 | - | 2274 | WP_060620925.1 | Serine/threonine-protein kinase PK-1 | VF |
| RY67_RS08090 () | 1923696..1924778 | - | 1083 | WP_060620926.1 | polyprenyl synthetase family protein | - |
| RY67_RS08095 () | 1924985..1925647 | + | 663 | WP_007052659.1 | DUF4192 family protein | - |
| RY67_RS08100 () | 1925850..1927238 | + | 1389 | WP_060620927.1 | RNA polymerase principal sigma factor HrdB | VF |
| RY67_RS08105 () | 1927296..1929611 | + | 2316 | WP_013140869.1 | type IIA DNA topoisomerase subunit B | - |
| RY67_RS08110 () | 1929778..1931004 | + | 1227 | WP_029679497.1 | MFS transporter | - |
| RY67_RS08115 () | 1931048..1931644 | + | 597 | WP_060620928.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|