MGE detailed information
MGE type: Prophage MGE length: 51756 bp
Accession: NZ_CP010371 Location: 1653976..1705731 Organism: Escherichia coli strain 6409 Replicon: chromosome
Accession: NZ_CP010371 Location: 1653976..1705731 Organism: Escherichia coli strain 6409 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RR31_RS08015 () | 1650491..1651237 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| RR31_RS08020 () | 1651326..1652012 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| RR31_RS08025 () | 1652189..1652392 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| RR31_RS08030 () | 1652427..1653887 | - | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| RR31_RS08035 () | 1653976..1655343 | - | 1368 | Protein_1524 | MHS family MFS transporter | - |
| RR31_RS28750 () | 1655864..1655977 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| RR31_RS08040 () | 1656046..1656279 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| RR31_RS08045 () | 1656596..1657186 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| RR31_RS08050 () | 1657284..1657859 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| RR31_RS08055 () | 1657859..1658761 | - | 903 | WP_044721746.1 | phage tail protein | - |
| RR31_RS08065 () | 1658827..1659989 | + | 1163 | WP_085947771.1 | IS3 family transposase IS3 | Transposase |
| RR31_RS26400 () | 1660527..1662194 | - | 1668 | Protein_1531 | prophage tail fiber N-terminal domain-containing protein | - |
| RR31_RS08090 () | 1662259..1662858 | - | 600 | WP_001230375.1 | Attachment invasion locus protein | VF |
| RR31_RS08095 () | 1662928..1666425 | - | 3498 | WP_000515714.1 | host specificity protein J | - |
| RR31_RS08100 () | 1666486..1667118 | - | 633 | WP_000090895.1 | tail assembly protein | - |
| RR31_RS08105 () | 1667055..1667798 | - | 744 | WP_000194783.1 | C40 family peptidase | - |
| RR31_RS08110 () | 1667804..1668502 | - | 699 | WP_001152640.1 | phage minor tail protein L | - |
| RR31_RS08115 () | 1668502..1668831 | - | 330 | WP_000847379.1 | phage tail protein | - |
| RR31_RS08120 () | 1668828..1671389 | - | 2562 | WP_000840342.1 | phage tail tape measure protein | - |
| RR31_RS08125 () | 1671382..1671816 | - | 435 | WP_000459465.1 | phage tail assembly protein T | - |
| RR31_RS08130 () | 1671798..1672220 | - | 423 | WP_000479142.1 | phage minor tail protein G | - |
| RR31_RS08135 () | 1672236..1672976 | - | 741 | WP_001349920.1 | phage tail protein | - |
| RR31_RS08140 () | 1672984..1673379 | - | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| RR31_RS08145 () | 1673376..1673954 | - | 579 | WP_000975070.1 | phage tail protein | - |
| RR31_RS08150 () | 1673966..1674319 | - | 354 | WP_000753007.1 | head-tail joining protein | - |
| RR31_RS08155 () | 1674331..1674729 | - | 399 | WP_000158905.1 | DNA-packaging protein FI | - |
| RR31_RS08160 () | 1674771..1675796 | - | 1026 | WP_000063277.1 | major capsid protein | - |
| RR31_RS08165 () | 1675853..1676185 | - | 333 | WP_001295978.1 | head decoration protein | - |
| RR31_RS08170 () | 1676195..1677514 | - | 1320 | WP_000123218.1 | S49 family peptidase | - |
| RR31_RS08175 () | 1677495..1679096 | - | 1602 | WP_001349919.1 | phage portal protein | - |
| RR31_RS08180 () | 1679093..1679299 | - | 207 | WP_000198149.1 | gpW family protein | - |
| RR31_RS08185 () | 1679296..1681221 | - | 1926 | WP_001027259.1 | phage terminase large subunit family protein | - |
| RR31_RS08190 () | 1681196..1681741 | - | 546 | WP_000453611.1 | DNA-packaging protein | - |
| RR31_RS08205 () | 1682130..1682363 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| RR31_RS08210 () | 1682421..1682831 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| RR31_RS08215 () | 1682983..1683156 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| RR31_RS08220 () | 1683328..1683483 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| RR31_RS28755 () | 1683563..1683628 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| RR31_RS26405 () | 1683631..1683819 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| RR31_RS08225 () | 1683830..1684042 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| RR31_RS08230 () | 1684405..1684902 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| RR31_RS08235 () | 1684899..1685432 | - | 534 | WP_001092971.1 | lysozyme | - |
| RR31_RS08240 () | 1685429..1685740 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| RR31_RS08245 () | 1685745..1685960 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| RR31_RS08260 () | 1687029..1687520 | - | 492 | WP_052424683.1 | antitermination protein | - |
| RR31_RS08265 () | 1687534..1688583 | - | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| RR31_RS08270 () | 1688585..1688863 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| RR31_RS08275 () | 1688930..1689181 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| RR31_RS08280 () | 1689398..1689553 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| RR31_RS08285 () | 1689625..1689912 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| RR31_RS08290 () | 1689912..1690151 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| RR31_RS26415 () | 1690176..1690481 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| RR31_RS08295 () | 1690684..1691016 | + | 333 | WP_001301033.1 | protein FlxA | - |
| RR31_RS08300 () | 1691453..1692766 | - | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| RR31_RS29310 () | 1693535..1693822 | - | 288 | Protein_1575 | hypothetical protein | - |
| RR31_RS08315 () | 1694044..1694448 | + | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| RR31_RS08320 () | 1694445..1694792 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| RR31_RS08325 () | 1694841..1696376 | + | 1536 | WP_001333339.1 | IS66 family transposase ISEc22 | Transposase |
| RR31_RS08330 () | 1696896..1697252 | - | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| RR31_RS08335 () | 1697249..1697671 | - | 423 | WP_001151262.1 | DUF977 family protein | - |
| RR31_RS08340 () | 1697712..1698677 | - | 966 | WP_000054512.1 | hypothetical protein | - |
| RR31_RS08345 () | 1698658..1699179 | - | 522 | WP_000705358.1 | hypothetical protein | - |
| RR31_RS08350 () | 1699163..1699393 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| RR31_RS08355 () | 1699477..1699884 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| RR31_RS08360 () | 1700051..1700206 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| RR31_RS08365 () | 1700366..1700584 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| RR31_RS08375 () | 1701152..1701340 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| RR31_RS08380 () | 1701337..1701528 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| RR31_RS08385 () | 1701621..1704092 | + | 2472 | Protein_1589 | 3'-5' exoribonuclease | - |
| RR31_RS08390 () | 1704165..1704416 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| RR31_RS08395 () | 1704451..1705731 | + | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| RR31_RS28085 () | 1705751..1705861 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| RR31_RS08400 () | 1705919..1706938 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| RR31_RS08405 () | 1706950..1708144 | - | 1195 | Protein_1594 | starvation-sensing protein RspA | - |
| RR31_RS08410 () | 1708350..1708676 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| RR31_RS08415 () | 1708811..1709152 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| RR31_RS08420 () | 1709187..1709747 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| RR31_RS08425 () | 1709750..1710460 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|