MGE detailed information
MGE type: Genomic_island MGE length: 18721 bp
Accession: NZ_CP010304 Location: 5416949..5435669 Organism: Escherichia coli O157:H7 str. SS52 Replicon: chromosome
Accession: NZ_CP010304 Location: 5416949..5435669 Organism: Escherichia coli O157:H7 str. SS52 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SS52_RS27905 () | 5412100..5413278 | - | 1179 | WP_001089435.1 | MFS transporter | - |
| SS52_RS27910 () | 5413346..5414188 | - | 843 | WP_000746206.1 | YjiK family protein | - |
| SS52_RS27915 () | 5414454..5416637 | - | 2184 | WP_000535062.1 | T3SS effector pentapeptide repeat protein EspX6 | - |
| SS52_RS27920 () | 5416949..5417215 | - | 267 | WP_000657677.1 | DUF3343 domain-containing protein | - |
| SS52_RS27925 () | 5417212..5417979 | - | 768 | WP_000222489.1 | hypothetical protein | - |
| SS52_RS27930 () | 5417989..5419140 | - | 1152 | WP_001301805.1 | 2-hydroxyacyl-CoA dehydratase subunit D | - |
| SS52_RS27935 () | 5419256..5420527 | - | 1272 | WP_001037406.1 | DUF445 domain-containing protein | - |
| SS52_RS27940 () | 5420568..5421800 | - | 1233 | WP_001136983.1 | multidrug efflux MFS transporter MdtM | - |
| SS52_RS27945 () | 5422267..5423019 | + | 753 | Protein_5239 | Recombination-promoting nuclease RpnD | VF |
| SS52_RS33475 () | 5423024..5423224 | + | 201 | WP_001310455.1 | hypothetical protein | - |
| SS52_RS27950 () | 5423467..5424879 | - | 1413 | WP_000199295.1 | PLP-dependent aminotransferase family protein | - |
| SS52_RS27955 () | 5425056..5425220 | + | 165 | WP_000394274.1 | DUF1127 domain-containing protein | - |
| SS52_RS27960 () | 5425317..5426198 | + | 882 | WP_001304007.1 | DUF262 domain-containing protein | - |
| SS52_RS31330 () | 5426246..5427409 | + | 1164 | WP_001304006.1 | DUF1524 domain-containing protein | - |
| SS52_RS27970 () | 5427456..5427797 | - | 342 | WP_000132630.1 | endoribonuclease SymE | Toxin Detail |
| - () | 5427792..5427868 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - () | 5427792..5427868 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - () | 5427792..5427868 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - () | 5427792..5427868 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - () | 5427792..5427868 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 5427792..5427868 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 5427792..5427868 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 5427792..5427868 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| SS52_RS27975 () | 5428018..5429772 | - | 1755 | WP_000110082.1 | restriction endonuclease subunit S | - |
| SS52_RS27980 () | 5429772..5431241 | - | 1470 | WP_001302468.1 | type I restriction-modification system subunit M | - |
| SS52_RS27985 () | 5431308..5433740 | - | 2433 | WP_000819018.1 | DEAD/DEAH box helicase family protein | - |
| SS52_RS27990 () | 5434018..5434302 | + | 285 | WP_001304005.1 | DUF262 domain-containing protein | - |
| SS52_RS27995 () | 5434311..5435669 | + | 1359 | WP_001304004.1 | DUF262 domain-containing protein | - |
| SS52_RS28000 () | 5435738..5436694 | - | 957 | WP_001297640.1 | GTPase | - |
| SS52_RS28005 () | 5436705..5436908 | - | 204 | WP_000467859.1 | YbdD/YjiX family protein | - |
| SS52_RS28010 () | 5436958..5439108 | - | 2151 | WP_001298933.1 | pyruvate/proton symporter BtsT | - |
| SS52_RS28020 () | 5439401..5439943 | - | 543 | WP_000934391.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. EDL933 | NC_002655 | 5456776..5475497 | 0 | |||
| Escherichia coli O157:H7 str. Sakai | NC_002695 | 5426911..5445631 | 0 |