MGE detailed information
MGE type: Prophage MGE length: 47793 bp
Accession: NZ_CP010240 Location: 3590700..3638492 Organism: Escherichia coli strain C7 Replicon: chromosome
Accession: NZ_CP010240 Location: 3590700..3638492 Organism: Escherichia coli strain C7 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG29_RS18960 () | 3587213..3587959 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| RG29_RS18965 () | 3588048..3588734 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| RG29_RS18970 () | 3588912..3589115 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| RG29_RS18975 () | 3589151..3590611 | - | 1461 | WP_000527799.1 | mannitol dehydrogenase family protein | - |
| RG29_RS18980 () | 3590700..3591983 | - | 1284 | Protein_3406 | MHS family MFS transporter YdfJ | - |
| RG29_RS30035 () | 3592587..3592700 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| RG29_RS18985 () | 3592769..3593002 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| RG29_RS18990 () | 3593319..3593909 | + | 591 | WP_000086527.1 | recombinase family protein | - |
| RG29_RS18995 () | 3594007..3594582 | - | 576 | WP_000885621.1 | tail fiber assembly protein | - |
| RG29_RS19000 () | 3594582..3597496 | - | 2915 | Protein_3411 | prophage tail fiber N-terminal domain-containing protein | - |
| RG29_RS19005 () | 3597561..3598160 | - | 600 | WP_001230388.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| RG29_RS19010 () | 3598227..3601625 | - | 3399 | WP_073520352.1 | host specificity protein J | - |
| RG29_RS30460 () | 3601692..3602030 | - | 339 | WP_153274582.1 | hypothetical protein | - |
| RG29_RS19015 () | 3602103..3602744 | - | 642 | WP_028127181.1 | tail assembly protein | - |
| RG29_RS19020 () | 3602642..3603379 | - | 738 | WP_000967259.1 | C40 family peptidase | - |
| RG29_RS19025 () | 3603434..3604357 | - | 924 | WP_001434463.1 | phage antirepressor Ant | - |
| RG29_RS19030 () | 3604428..3604601 | - | 174 | WP_001154345.1 | Arc family DNA-binding protein | - |
| RG29_RS19035 () | 3604708..3605028 | + | 321 | WP_001302649.1 | Arc family DNA-binding protein | - |
| RG29_RS19040 () | 3605048..3605743 | - | 696 | WP_073520351.1 | phage minor tail protein L | - |
| RG29_RS19045 () | 3605753..3606082 | - | 330 | WP_000447247.1 | phage tail protein | - |
| RG29_RS19050 () | 3606082..3609147 | - | 3066 | WP_021574610.1 | phage tail tape measure protein | - |
| RG29_RS19055 () | 3609119..3609448 | - | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| RG29_RS19060 () | 3609457..3609843 | - | 387 | WP_001341514.1 | phage minor tail protein G | - |
| RG29_RS19065 () | 3609904..3610647 | - | 744 | WP_000211132.1 | Ig domain-containing protein | - |
| RG29_RS19070 () | 3610658..3611059 | - | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| RG29_RS19075 () | 3611056..3611634 | - | 579 | WP_000677093.1 | phage tail protein | - |
| RG29_RS19080 () | 3611646..3611921 | - | 276 | WP_001283154.1 | DNA breaking-rejoining protein | - |
| RG29_RS19085 () | 3611914..3612238 | - | 325 | Protein_3429 | DUF2190 family protein | - |
| RG29_RS19090 () | 3612325..3614352 | - | 2028 | WP_077898316.1 | Clp protease ClpP | - |
| RG29_RS19095 () | 3614330..3615805 | - | 1476 | WP_001459763.1 | phage portal protein | - |
| RG29_RS19100 () | 3615805..3616017 | - | 213 | WP_001072975.1 | hypothetical protein | - |
| RG29_RS19105 () | 3616014..3618117 | - | 2104 | Protein_3433 | phage terminase large subunit family protein | - |
| RG29_RS19110 () | 3618117..3618611 | - | 495 | WP_000373425.1 | DUF1441 family protein | - |
| RG29_RS19125 () | 3619174..3619380 | - | 207 | WP_001031433.1 | hypothetical protein | - |
| RG29_RS19135 () | 3619681..3620112 | + | 432 | WP_000035576.1 | DUF1398 domain-containing protein | - |
| RG29_RS19140 () | 3620264..3620437 | - | 174 | WP_001019139.1 | addiction module toxin, GnsA/GnsB family | - |
| RG29_RS19145 () | 3620609..3620764 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| RG29_RS30045 () | 3620844..3620909 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| RG29_RS19150 () | 3620912..3621100 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| RG29_RS19155 () | 3621111..3621323 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| RG29_RS19160 () | 3621685..3622182 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| RG29_RS19165 () | 3622179..3622712 | - | 534 | WP_001092971.1 | lysozyme | - |
| RG29_RS19170 () | 3622709..3623020 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| RG29_RS19175 () | 3623025..3623240 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| RG29_RS30655 () | 3623460..3623630 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| RG29_RS19180 () | 3623994..3624209 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| RG29_RS19185 () | 3624509..3624721 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| RG29_RS30050 () | 3624776..3624865 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| RG29_RS19190 () | 3625133..3625885 | - | 753 | WP_001047135.1 | antitermination protein | - |
| RG29_RS19195 () | 3625899..3626948 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| RG29_RS19200 () | 3626950..3627228 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| RG29_RS19205 () | 3627295..3627546 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| RG29_RS19210 () | 3627763..3627918 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| RG29_RS19215 () | 3627990..3628277 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| RG29_RS19220 () | 3628277..3628516 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| RG29_RS19225 () | 3628541..3628846 | + | 306 | WP_071527819.1 | hypothetical protein | - |
| RG29_RS19235 () | 3629049..3629381 | + | 333 | WP_001317460.1 | FlxA-like family protein | - |
| RG29_RS19240 () | 3629818..3631158 | - | 1341 | WP_000589015.1 | ISNCY family transposase | - |
| RG29_RS19245 () | 3631192..3631611 | - | 420 | WP_001151196.1 | DUF977 family protein | - |
| RG29_RS19250 () | 3631652..3632617 | - | 966 | WP_000054504.1 | hypothetical protein | - |
| RG29_RS19255 () | 3632598..3633119 | - | 522 | WP_000705349.1 | hypothetical protein | - |
| RG29_RS19260 () | 3633103..3633330 | - | 228 | WP_000476993.1 | transcriptional regulator | - |
| RG29_RS19265 () | 3633408..3633815 | + | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| RG29_RS19270 () | 3634008..3634163 | + | 156 | WP_000379589.1 | DUF1391 family protein | - |
| RG29_RS19275 () | 3634165..3634740 | + | 576 | WP_000344954.1 | hypothetical protein | - |
| RG29_RS19280 () | 3635227..3635415 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| RG29_RS19285 () | 3635412..3635603 | + | 192 | WP_001083280.1 | lysis protein YdfD | - |
| RG29_RS19290 () | 3635697..3638168 | + | 2472 | WP_073520356.1 | exonuclease | - |
| RG29_RS19295 () | 3638241..3638492 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| RG29_RS19300 () | 3638527..3639786 | + | 1260 | Protein_3471 | DUF3596 domain-containing protein | - |
| RG29_RS19305 () | 3639789..3640481 | - | 693 | Protein_3472 | starvation-sensing protein RspA | - |
| RG29_RS19315 () | 3640687..3641013 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| RG29_RS19320 () | 3641148..3641489 | + | 342 | WP_000705197.1 | DUF1283 family protein | - |
| RG29_RS19325 () | 3641524..3642084 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| RG29_RS19330 () | 3642087..3642797 | - | 711 | WP_001443598.1 | YnfC family lipoprotein | - |
| RG29_RS19335 () | 3642905..3643210 | + | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|