MGE detailed information
MGE type: Prophage MGE length: 61921 bp
Accession: NZ_CP010240 Location: 3056536..3118456 Organism: Escherichia coli strain C7 Replicon: chromosome
Accession: NZ_CP010240 Location: 3056536..3118456 Organism: Escherichia coli strain C7 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG29_RS15945 () | 3052443..3053642 | + | 1200 | WP_000284709.1 | lipoprotein-releasing ABC transporter permease subunit LolC | - |
| RG29_RS15950 () | 3053635..3054336 | + | 702 | WP_001033695.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| RG29_RS15955 () | 3054336..3055580 | + | 1245 | WP_001251348.1 | lipoprotein-releasing ABC transporter permease subunit LolE | - |
| RG29_RS15960 () | 3055609..3056520 | + | 912 | WP_000291270.1 | N-acetylglucosamine kinase | - |
| RG29_RS15965 () | 3056536..3057357 | + | 822 | WP_000952736.1 | NAD-dependent protein deacylase | - |
| RG29_RS15970 () | 3057496..3058284 | - | 789 | WP_000713472.1 | TPM domain-containing protein | - |
| RG29_RS15975 () | 3058281..3058742 | - | 462 | WP_000076381.1 | DUF3592 domain-containing protein | - |
| RG29_RS15980 () | 3058800..3059846 | - | 1047 | WP_000759309.1 | spermidine/putrescine ABC transporter substrate-binding protein PotD | - |
| RG29_RS15985 () | 3059843..3060637 | - | 795 | WP_000580316.1 | spermidine/putrescine ABC transporter permease PotC | - |
| RG29_RS15990 () | 3060804..3061922 | - | 1119 | WP_000074983.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| RG29_RS15995 () | 3061891..3062160 | - | 270 | WP_000003742.1 | excisionase | - |
| RG29_RS16000 () | 3062222..3064693 | - | 2472 | WP_000048520.1 | exonuclease | - |
| RG29_RS16005 () | 3064786..3064977 | - | 192 | WP_001090200.1 | DUF1482 family protein | - |
| RG29_RS16010 () | 3064974..3065162 | - | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| RG29_RS16015 () | 3065563..3065727 | + | 165 | WP_001340038.1 | hypothetical protein | - |
| RG29_RS16020 () | 3065731..3065949 | - | 219 | WP_001171974.1 | hypothetical protein | - |
| RG29_RS16030 () | 3066109..3066264 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| RG29_RS16035 () | 3066534..3066824 | - | 291 | WP_014966210.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RG29_RS16040 () | 3066824..3067015 | - | 192 | WP_000100896.1 | hypothetical protein | Antitoxin Detail |
| RG29_RS16045 () | 3067033..3067533 | - | 501 | WP_000823909.1 | helix-turn-helix transcriptional regulator | - |
| RG29_RS16050 () | 3067641..3067916 | + | 276 | WP_001048458.1 | helix-turn-helix domain-containing protein | - |
| RG29_RS16055 () | 3067900..3068325 | + | 426 | WP_000693918.1 | Rha family transcriptional regulator | - |
| RG29_RS29950 () | 3068397..3069413 | + | 1017 | WP_001262344.1 | hypothetical protein | - |
| RG29_RS29955 () | 3069325..3069867 | + | 543 | WP_072130322.1 | replication protein | - |
| RG29_RS16070 () | 3069901..3070671 | + | 771 | WP_000450649.1 | DUF1627 domain-containing protein | - |
| RG29_RS16075 () | 3070687..3071109 | + | 423 | WP_001151239.1 | DUF977 family protein | - |
| RG29_RS16085 () | 3071188..3072168 | + | 981 | WP_000019399.1 | IS5-like element IS5 family transposase | - |
| RG29_RS16090 () | 3072414..3072626 | + | 213 | WP_000935423.1 | hypothetical protein | - |
| RG29_RS16095 () | 3072659..3072877 | + | 219 | WP_000209148.1 | DUF4014 family protein | - |
| RG29_RS16100 () | 3072879..3073142 | + | 264 | WP_000224233.1 | hypothetical protein | - |
| RG29_RS16105 () | 3073153..3074022 | + | 870 | WP_000208016.1 | DUF551 domain-containing protein | - |
| RG29_RS16110 () | 3074138..3074242 | + | 105 | WP_001278454.1 | hypothetical protein | - |
| RG29_RS16120 () | 3074489..3074644 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| RG29_RS16130 () | 3074812..3075090 | + | 279 | WP_001341382.1 | hypothetical protein | - |
| RG29_RS16135 () | 3075092..3076147 | + | 1056 | WP_001265092.1 | DUF968 domain-containing protein | - |
| RG29_RS16140 () | 3076148..3076513 | + | 366 | WP_000140011.1 | RusA family crossover junction endodeoxyribonuclease | - |
| RG29_RS16145 () | 3076522..3077064 | + | 543 | WP_000640023.1 | DUF1133 family protein | - |
| RG29_RS16150 () | 3077377..3077574 | + | 198 | WP_000917767.1 | hypothetical protein | - |
| RG29_RS16155 () | 3077725..3078774 | + | 1050 | WP_000611213.1 | site-specific DNA-methyltransferase | - |
| RG29_RS16170 () | 3079246..3079677 | + | 432 | WP_000466957.1 | tellurite resistance TerB family protein | - |
| RG29_RS16175 () | 3079674..3079929 | + | 256 | Protein_2893 | DUF3927 family protein | - |
| RG29_RS29335 () | 3080248..3082097 | + | 1850 | Protein_2894 | DUF1737 domain-containing protein | - |
| RG29_RS16205 () | 3082379..3082594 | + | 216 | WP_053897820.1 | class II holin family protein | - |
| RG29_RS16215 () | 3082850..3083122 | - | 273 | WP_000138558.1 | hypothetical protein | - |
| RG29_RS16225 () | 3083282..3083815 | + | 534 | WP_001003112.1 | lysozyme | - |
| RG29_RS29965 () | 3084462..3084668 | + | 207 | WP_001208682.1 | Rz1 family lipoprotein | - |
| RG29_RS16245 () | 3084733..3084957 | + | 225 | WP_000735655.1 | hypothetical protein | - |
| RG29_RS16255 () | 3085314..3085454 | + | 141 | WP_000347013.1 | hypothetical protein | - |
| RG29_RS16260 () | 3085584..3085769 | - | 186 | WP_001341372.1 | YlcI/YnfO family protein | - |
| RG29_RS16265 () | 3085811..3086176 | + | 366 | WP_000279816.1 | HNH endonuclease | - |
| RG29_RS16270 () | 3086467..3087030 | + | 564 | WP_000958380.1 | terminase small subunit | - |
| RG29_RS16275 () | 3087027..3088688 | + | 1662 | WP_001399867.1 | terminase large subunit | - |
| RG29_RS16280 () | 3088752..3090689 | + | 1938 | WP_069722407.1 | phage major capsid protein | - |
| RG29_RS16285 () | 3090734..3090955 | + | 222 | WP_001063094.1 | hypothetical protein | - |
| RG29_RS16290 () | 3090901..3093161 | + | 2261 | Protein_2907 | phage portal protein | - |
| RG29_RS16295 () | 3093158..3093484 | + | 327 | WP_000125984.1 | head-tail connector protein | - |
| RG29_RS16300 () | 3093495..3093845 | + | 351 | WP_001007892.1 | phage head closure protein | - |
| RG29_RS16305 () | 3093842..3094288 | + | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| RG29_RS16310 () | 3094285..3094629 | + | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| RG29_RS16315 () | 3094696..3095412 | + | 717 | WP_001275471.1 | tail protein | - |
| RG29_RS16320 () | 3095418..3095792 | + | 375 | WP_001030060.1 | phage tail assembly chaperone | - |
| RG29_RS16325 () | 3095888..3096097 | + | 210 | WP_001513217.1 | DUF4035 domain-containing protein | - |
| RG29_RS16330 () | 3096145..3099387 | + | 3243 | WP_000212983.1 | phage tail tape measure protein | - |
| RG29_RS16335 () | 3099380..3099721 | + | 342 | WP_000807940.1 | phage tail protein | - |
| RG29_RS16340 () | 3099721..3100419 | + | 699 | WP_001335877.1 | phage minor tail protein L | - |
| RG29_RS16345 () | 3100430..3101173 | + | 744 | WP_001429308.1 | C40 family peptidase | - |
| RG29_RS16350 () | 3101119..3101751 | + | 633 | WP_122993493.1 | tail assembly protein | - |
| RG29_RS16355 () | 3101997..3104690 | + | 2694 | Protein_2920 | host specificity protein J | - |
| RG29_RS29970 () | 3104694..3105179 | + | 486 | Protein_2921 | tail assembly protein | - |
| RG29_RS16360 () | 3105425..3108901 | + | 3477 | WP_073520354.1 | host specificity protein J | - |
| RG29_RS16365 () | 3108970..3109593 | + | 624 | WP_001360257.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| RG29_RS16370 () | 3109658..3110980 | + | 1323 | WP_073519394.1 | prophage tail fiber N-terminal domain-containing protein | - |
| RG29_RS16375 () | 3110982..3111251 | + | 270 | WP_001023435.1 | phage tail fiber C-terminal domain-containing protein | - |
| RG29_RS16380 () | 3111365..3111940 | + | 576 | WP_001131642.1 | DUF1076 domain-containing protein | - |
| RG29_RS16385 () | 3112231..3112812 | + | 582 | WP_001118085.1 | T3SS effector NleG family protein | - |
| RG29_RS16390 () | 3112880..3113515 | + | 636 | WP_012816780.1 | DUF1076 domain-containing protein | - |
| RG29_RS16395 () | 3113643..3114701 | - | 1059 | WP_001299273.1 | T3SS effector EspW | - |
| RG29_RS16400 () | 3114776..3115426 | - | 651 | WP_001144080.1 | T3SS effector NleG family protein | - |
| RG29_RS16405 () | 3115609..3116199 | + | 591 | WP_001132165.1 | bfpT-regulated chaperone | - |
| RG29_RS16415 () | 3116473..3117336 | - | 864 | WP_000799399.1 | spermidine/putrescine ABC transporter permease PotB | - |
| RG29_RS16420 () | 3117320..3118456 | - | 1137 | WP_000531594.1 | spermidine/putrescine ABC transporter ATP-binding protein PotA | - |
| RG29_RS16430 () | 3118706..3119935 | + | 1230 | WP_000359439.1 | peptidase T | - |
| RG29_RS16435 () | 3120081..3121202 | - | 1122 | WP_000456506.1 | [50S ribosomal protein L16]-arginine 3-hydroxylase | - |
| RG29_RS16440 () | 3121278..3122738 | - | 1461 | WP_000735406.1 | two-component system sensor histidine kinase PhoQ | - |
| RG29_RS16445 () | 3122738..3123409 | - | 672 | WP_001265481.1 | two-component system response regulator PhoP | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|