MGE detailed information
MGE type: Prophage MGE length: 37996 bp
Accession: NZ_CP010226 Location: 1905205..1943200 Organism: Escherichia coli strain S1 Replicon: chromosome
Accession: NZ_CP010226 Location: 1905205..1943200 Organism: Escherichia coli strain S1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG64_RS10405 () | 1901719..1902465 | + | 747 | WP_001324973.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| RG64_RS10410 () | 1902554..1903240 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| RG64_RS10415 () | 1903417..1903620 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| RG64_RS10420 () | 1903656..1905116 | - | 1461 | WP_000527800.1 | mannitol dehydrogenase family protein | - |
| RG64_RS10425 () | 1905205..1906488 | - | 1284 | Protein_1850 | MHS family MFS transporter YdfJ | - |
| RG64_RS26645 () | 1907093..1907206 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| RG64_RS10430 () | 1907275..1907508 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| RG64_RS10435 () | 1907825..1908415 | + | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| RG64_RS10440 () | 1908513..1908956 | - | 444 | Protein_1854 | tail fiber assembly protein | - |
| RG64_RS10445 () | 1908907..1909587 | - | 681 | WP_073527384.1 | phage portal protein | - |
| RG64_RS10450 () | 1909584..1909790 | - | 207 | WP_000198149.1 | gpW family protein | - |
| RG64_RS10455 () | 1909787..1911712 | - | 1926 | WP_001027297.1 | phage terminase large subunit family protein | - |
| RG64_RS10460 () | 1911687..1912232 | - | 546 | WP_000453611.1 | DNA-packaging protein | - |
| RG64_RS10465 () | 1912621..1912854 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| RG64_RS10470 () | 1912912..1913322 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| RG64_RS10475 () | 1913474..1913647 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| RG64_RS10480 () | 1913819..1913974 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| RG64_RS26650 () | 1914053..1914118 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| RG64_RS10485 () | 1914121..1914309 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| RG64_RS10490 () | 1914320..1914532 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| RG64_RS10495 () | 1914894..1915392 | - | 499 | Protein_1866 | DUF2514 domain-containing protein | - |
| RG64_RS10500 () | 1915389..1915922 | - | 534 | WP_001515369.1 | lysozyme | - |
| RG64_RS10505 () | 1915978..1916292 | - | 315 | WP_001515370.1 | YdfR family protein | - |
| RG64_RS10510 () | 1916297..1916512 | - | 216 | WP_073527385.1 | phage lysis protein EssD | - |
| RG64_RS10515 () | 1916703..1917416 | - | 714 | WP_001146314.1 | HTH-type transcriptional regulator GadW | VF |
| RG64_RS10525 () | 1917823..1918782 | - | 960 | WP_000592549.1 | DUF523 and DUF1722 domain-containing protein | - |
| RG64_RS10530 () | 1918975..1919499 | + | 525 | WP_000780584.1 | lipocalin family protein | - |
| RG64_RS10535 () | 1919655..1920032 | - | 378 | WP_001204787.1 | antitermination protein | - |
| RG64_RS10540 () | 1920050..1921099 | - | 1050 | WP_001515372.1 | DUF968 domain-containing protein | - |
| RG64_RS10545 () | 1921101..1921379 | - | 279 | WP_001515373.1 | hypothetical protein | - |
| RG64_RS10550 () | 1921446..1921697 | - | 252 | WP_001463433.1 | hypothetical protein | - |
| RG64_RS10555 () | 1921914..1922069 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| RG64_RS10560 () | 1922141..1922428 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| RG64_RS10565 () | 1922428..1922667 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| RG64_RS10570 () | 1922692..1922997 | + | 306 | WP_071593935.1 | hypothetical protein | - |
| RG64_RS10580 () | 1923200..1923532 | + | 333 | WP_001301033.1 | protein FlxA | - |
| RG64_RS27075 () | 1923969..1924121 | - | 153 | WP_187658858.1 | hypothetical protein | - |
| RG64_RS10590 () | 1924113..1924391 | - | 279 | Protein_1883 | hypothetical protein | - |
| RG64_RS10600 () | 1924494..1925656 | + | 1163 | WP_085947771.1 | IS3 family transposase IS3 | Transposase |
| RG64_RS10605 () | 1925670..1925864 | - | 195 | WP_073527387.1 | transcriptional regulator | - |
| RG64_RS10610 () | 1925945..1926352 | + | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| RG64_RS10615 () | 1926521..1926676 | + | 156 | WP_000379588.1 | DUF1391 family protein | - |
| RG64_RS10625 () | 1926836..1927054 | + | 219 | WP_001171952.1 | hypothetical protein | - |
| RG64_RS10635 () | 1927622..1927810 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| RG64_RS10640 () | 1927807..1927998 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| RG64_RS10645 () | 1928092..1930563 | + | 2472 | WP_001515375.1 | exonuclease | - |
| RG64_RS10650 () | 1930636..1930887 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| RG64_RS10655 () | 1930922..1931917 | + | 996 | Protein_1893 | IS91 family transposase ISTha3 | Transposase |
| RG64_RS26000 () | 1931974..1932657 | + | 684 | Protein_1894 | IS1 family transposase | - |
| RG64_RS10680 () | 1932702..1933265 | + | 564 | WP_001296758.1 | Type-1 fimbrial protein, A chain | VF |
| RG64_RS10685 () | 1933626..1934336 | + | 711 | WP_001195166.1 | Chaperone protein FocC | VF |
| RG64_RS10690 () | 1934378..1936282 | + | 1905 | Protein_1897 | Outer membrane usher protein FimD | VF |
| RG64_RS26005 () | 1936298..1936981 | - | 684 | Protein_1898 | IS1 family transposase | - |
| RG64_RS10705 () | 1937037..1937792 | + | 756 | Protein_1899 | Outer membrane usher protein FimD | VF |
| RG64_RS10710 () | 1937806..1938171 | + | 366 | Protein_1900 | Protein FimF | VF |
| RG64_RS26010 () | 1938187..1938870 | - | 684 | Protein_1901 | IS1 family transposase | - |
| RG64_RS10735 () | 1938928..1939098 | + | 171 | Protein_1902 | type 1 fimbrial protein | - |
| RG64_RS10740 () | 1939111..1939614 | + | 504 | WP_000825452.1 | Protein FimG | VF |
| RG64_RS10745 () | 1939673..1940587 | + | 915 | Protein_1904 | Type 1 fimbrin D-mannose specific adhesin | VF |
| RG64_RS10750 () | 1940921..1943200 | + | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| RG64_RS10755 () | 1943448..1943645 | + | 198 | WP_032169965.1 | two-component system connector SafA | - |
| RG64_RS10760 () | 1943720..1944481 | + | 762 | WP_000060493.1 | acid stress response transcriptional regulator YdeO | - |
| RG64_RS10765 () | 1944883..1945119 | + | 237 | Protein_1908 | sulfatase | - |
| RG64_RS26020 () | 1945177..1945860 | + | 684 | Protein_1909 | IS1 family transposase | - |
| RG64_RS10780 () | 1945878..1947272 | + | 1395 | Protein_1910 | TonB-dependent receptor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|