MGE detailed information
MGE type: Conjugative plasmid MGE length: 61005 bp
Accession: NZ_CP010209 Location: 1..61005 Organism: Escherichia coli strain M11 Replicon: plasmid C
Accession: NZ_CP010209 Location: 1..61005 Organism: Escherichia coli strain M11 Replicon: plasmid C
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG60_RS27380 () | 259..990 | - | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| RG60_RS27385 () | 1004..1513 | - | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| RG60_RS27390 () | 1510..4335 | - | 2826 | WP_001007030.1 | conjugal transfer mating pair stabilization protein TraG | - |
| RG60_RS27395 () | 4332..5708 | - | 1377 | WP_000982833.1 | conjugal transfer protein TraH | - |
| RG60_RS27400 () | 5705..6067 | - | 363 | WP_073519999.1 | P-type conjugative transfer protein TrbJ | - |
| RG60_RS27405 () | 5997..6542 | - | 546 | WP_000060037.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| RG60_RS27410 () | 6529..6813 | - | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| RG60_RS27415 () | 6932..7279 | - | 348 | WP_072656932.1 | conjugal transfer protein TrbA | - |
| RG60_RS27420 () | 7295..8038 | - | 744 | WP_073520000.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| RG60_RS27425 () | 8031..8278 | - | 248 | Protein_10 | conjugal transfer protein TrbE | - |
| RG60_RS27430 () | 8314..10164 | - | 1851 | WP_073520001.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| RG60_RS27435 () | 10161..10583 | - | 423 | WP_073520002.1 | HNH endonuclease | - |
| RG60_RS27440 () | 10608..10979 | - | 372 | WP_073520003.1 | hypothetical protein | - |
| RG60_RS27445 () | 10976..11614 | - | 639 | WP_073520004.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| RG60_RS27450 () | 11641..12159 | - | 519 | WP_073520005.1 | hypothetical protein | - |
| RG60_RS27455 () | 12222..12533 | - | 312 | WP_073520006.1 | hypothetical protein | - |
| RG60_RS27460 () | 12562..13554 | - | 993 | WP_073520007.1 | conjugal transfer pilus assembly protein TraU | - |
| RG60_RS27465 () | 13551..14183 | - | 633 | WP_073520008.1 | type-F conjugative transfer system protein TraW | - |
| RG60_RS27470 () | 14180..14566 | - | 387 | WP_073520009.1 | type-F conjugative transfer system protein TrbI | - |
| RG60_RS27475 () | 14563..17190 | - | 2628 | WP_073520010.1 | type IV secretion system protein TraC | - |
| RG60_RS27480 () | 17217..17594 | - | 378 | WP_073520011.1 | hypothetical protein | - |
| RG60_RS27485 () | 17591..18064 | - | 474 | WP_073520012.1 | hypothetical protein | - |
| RG60_RS27490 () | 18057..18278 | - | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| RG60_RS27495 () | 18413..18928 | - | 516 | WP_073520013.1 | type IV conjugative transfer system lipoprotein TraV | - |
| RG60_RS27500 () | 18925..19176 | - | 252 | WP_073520014.1 | conjugal transfer protein TrbG | - |
| RG60_RS27505 () | 19169..19489 | - | 321 | WP_073520015.1 | conjugal transfer protein TrbD | - |
| RG60_RS27510 () | 19486..20058 | - | 573 | WP_024179131.1 | conjugal transfer protein TraP | - |
| RG60_RS27515 () | 20048..21475 | - | 1428 | WP_000146685.1 | conjugal transfer protein TraB | - |
| RG60_RS27520 () | 21475..22179 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| RG60_RS27525 () | 22190..22756 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| RG60_RS27530 () | 22778..23089 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| RG60_RS27535 () | 23104..23469 | - | 366 | WP_073520016.1 | type IV conjugative transfer system pilin TraA | - |
| RG60_RS27540 () | 23503..23730 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| RG60_RS27545 () | 23824..24510 | - | 687 | WP_073520017.1 | PAS domain-containing protein | - |
| RG60_RS27550 () | 24701..25084 | - | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| RG60_RS27560 () | 25361..26008 | + | 648 | WP_000614935.1 | hypothetical protein | VF |
| RG60_RS27565 () | 26305..27126 | - | 822 | WP_073520018.1 | DUF945 domain-containing protein | - |
| RG60_RS27570 () | 27244..27531 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| RG60_RS27575 () | 27556..27762 | - | 207 | WP_073520019.1 | single-stranded DNA-binding protein | - |
| RG60_RS28505 () | 27764..27952 | - | 189 | WP_032141200.1 | hypothetical protein | - |
| RG60_RS27590 () | 28452..28610 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 28654..28878 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 28654..28878 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 28654..28878 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 28654..28878 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| RG60_RS27600 () | 28890..29609 | - | 720 | WP_001276234.1 | plasmid SOS inhibition protein A | - |
| RG60_RS27605 () | 29606..30040 | - | 435 | WP_000845949.1 | conjugation system SOS inhibitor PsiB | - |
| RG60_RS27610 () | 30095..32053 | - | 1959 | WP_073520020.1 | ParB/RepB/Spo0J family partition protein | - |
| RG60_RS27615 () | 32118..32351 | - | 234 | WP_001519997.1 | DUF905 family protein | - |
| RG60_RS27620 () | 32407..32946 | - | 540 | WP_009426937.1 | single-stranded DNA-binding protein | - |
| RG60_RS27625 () | 32972..33178 | - | 207 | WP_073520019.1 | single-stranded DNA-binding protein | - |
| RG60_RS27630 () | 33180..33368 | - | 189 | WP_032141200.1 | hypothetical protein | - |
| RG60_RS29220 () | 33291..33515 | + | 225 | WP_013279293.1 | hypothetical protein | - |
| RG60_RS27635 () | 33419..33646 | - | 228 | WP_071594011.1 | hypothetical protein | - |
| RG60_RS27640 () | 33798..34361 | - | 564 | WP_073520021.1 | class I SAM-dependent methyltransferase | - |
| RG60_RS27645 () | 34409..35770 | - | 1362 | WP_000170675.1 | DUF3560 domain-containing protein | - |
| RG60_RS27650 () | 35822..36052 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| RG60_RS28515 () | 36315..36572 | + | 258 | WP_072034878.1 | hypothetical protein | - |
| RG60_RS27660 () | 36482..36724 | - | 243 | WP_142295689.1 | hypothetical protein | - |
| RG60_RS27665 () | 37093..37284 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| RG60_RS27670 () | 37281..37703 | - | 423 | WP_042974081.1 | DUF1380 family protein | - |
| RG60_RS27675 () | 37750..38052 | - | 303 | WP_122987822.1 | antirestriction protein | - |
| RG60_RS27680 () | 38148..38714 | - | 567 | Protein_59 | DUF1472 domain-containing protein | - |
| RG60_RS29225 () | 39030..39363 | - | 334 | Protein_60 | hypothetical protein | - |
| RG60_RS27690 () | 39409..39843 | - | 435 | WP_073520023.1 | DUF1380 family protein | - |
| RG60_RS27695 () | 39857..40078 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| RG60_RS27700 () | 40079..40762 | - | 684 | WP_073520024.1 | DNA methylase | - |
| RG60_RS27705 () | 40838..41129 | - | 292 | Protein_64 | hypothetical protein | - |
| RG60_RS27710 () | 41277..42239 | + | 963 | WP_000959874.1 | plasmid segregation protein ParM | - |
| RG60_RS27715 () | 42242..42592 | + | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| RG60_RS27720 () | 42715..42996 | - | 282 | WP_001333089.1 | hypothetical protein | - |
| RG60_RS28520 () | 43124..43358 | - | 235 | Protein_68 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| RG60_RS28525 () | 43369..43674 | - | 306 | WP_001152000.1 | hypothetical protein | - |
| RG60_RS27730 () | 43885..44016 | + | 132 | Protein_70 | transposase | - |
| RG60_RS27735 () | 44294..46066 | - | 1773 | WP_001262766.1 | DUF262 domain-containing protein | - |
| RG60_RS27740 () | 46351..46752 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| RG60_RS29230 () | 46685..46942 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| RG60_RS27750 () | 47035..47688 | - | 654 | WP_000616800.1 | CPBP family intramembrane metalloprotease | - |
| RG60_RS27755 () | 47878..48264 | - | 387 | WP_073520026.1 | hypothetical protein | - |
| RG60_RS28530 () | 48396..48656 | + | 261 | WP_140429678.1 | hypothetical protein | - |
| RG60_RS27760 () | 48626..49483 | - | 858 | WP_073520027.1 | incFII family plasmid replication initiator RepA | - |
| RG60_RS27765 () | 49476..49550 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| RG60_RS27770 () | 49599..49745 | + | 147 | WP_001383969.1 | hypothetical protein | - |
| RG60_RS27775 () | 49789..50043 | - | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| RG60_RS27780 () | 50283..50873 | - | 591 | WP_073520028.1 | DUF2726 domain-containing protein | - |
| RG60_RS27785 () | 50911..51120 | - | 210 | WP_001299729.1 | hemolysin expression modulator Hha | - |
| RG60_RS27790 () | 51166..51627 | - | 462 | WP_073520029.1 | thermonuclease family protein | - |
| RG60_RS27795 () | 51872..52084 | - | 213 | WP_001311693.1 | hypothetical protein | - |
| RG60_RS27800 () | 52222..52782 | - | 561 | WP_073520030.1 | fertility inhibition protein FinO | - |
| RG60_RS27805 () | 52837..53571 | - | 735 | WP_073542046.1 | conjugal transfer pilus acetylase TraX | - |
| RG60_RS27810 () | 53588..58858 | - | 5271 | WP_073542047.1 | Multifunctional conjugation protein TraI | Relaxase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|