MGE detailed information
MGE type: Prophage MGE length: 61872 bp
Accession: NZ_CP010206 Location: 1377548..1439419 Organism: Escherichia coli strain M11 Replicon: chromosome
Accession: NZ_CP010206 Location: 1377548..1439419 Organism: Escherichia coli strain M11 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG60_RS06980 () | 1373584..1373874 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| RG60_RS06985 () | 1373941..1374297 | + | 357 | WP_001295500.1 | protein YebF | - |
| RG60_RS07000 () | 1374623..1375282 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| RG60_RS07010 () | 1375491..1377551 | + | 2061 | WP_000936956.1 | oligopeptidase B | - |
| RG60_RS07015 () | 1377548..1378210 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG60_RS07020 () | 1378234..1378890 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| RG60_RS07025 () | 1378992..1379222 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG60_RS07030 () | 1379361..1379735 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG60_RS07035 () | 1379739..1380611 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG60_RS07040 () | 1380624..1380965 | + | 342 | WP_000976492.1 | YebY family protein | - |
| RG60_RS07050 () | 1381358..1382434 | - | 1077 | WP_001189091.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| RG60_RS07055 () | 1382400..1382681 | - | 282 | WP_001311878.1 | excisionase | - |
| RG60_RS07060 () | 1382788..1382976 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - () | 1382792..1382970 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1382792..1382970 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1382792..1382970 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1382792..1382970 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| RG60_RS07065 () | 1382969..1383163 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| RG60_RS07070 () | 1383220..1384029 | - | 810 | WP_000166317.1 | recombination protein RecT | - |
| RG60_RS07075 () | 1384022..1386655 | - | 2634 | WP_021527613.1 | exodeoxyribonuclease VIII | - |
| RG60_RS07080 () | 1386754..1387029 | - | 276 | WP_001452559.1 | hypothetical protein | - |
| RG60_RS07085 () | 1387104..1387274 | - | 171 | WP_001359121.1 | hypothetical protein | - |
| RG60_RS07090 () | 1387274..1387495 | - | 222 | WP_073519610.1 | cell division protein FtsZ | - |
| RG60_RS07100 () | 1388025..1388219 | + | 195 | WP_001419881.1 | hypothetical protein | - |
| RG60_RS07105 () | 1388185..1388403 | - | 219 | WP_000232638.1 | hypothetical protein | - |
| RG60_RS07110 () | 1388703..1389122 | - | 420 | WP_000410105.1 | helix-turn-helix domain-containing protein | - |
| RG60_RS07115 () | 1389219..1389461 | + | 243 | WP_001033914.1 | helix-turn-helix domain-containing protein | - |
| RG60_RS07120 () | 1389458..1389880 | + | 423 | WP_000702025.1 | hypothetical protein | - |
| RG60_RS07125 () | 1389958..1391088 | + | 1131 | WP_073519611.1 | hypothetical protein | - |
| RG60_RS07130 () | 1391095..1391841 | + | 747 | WP_073519612.1 | IS21 family transposase ISCsa9 | Transposase |
| RG60_RS07135 () | 1391864..1392625 | + | 762 | WP_073519613.1 | DUF1627 domain-containing protein | - |
| RG60_RS07140 () | 1392641..1393063 | + | 423 | WP_073519614.1 | DUF977 family protein | - |
| RG60_RS07145 () | 1393060..1393260 | + | 201 | WP_073519615.1 | hypothetical protein | - |
| RG60_RS28740 () | 1393592..1393780 | + | 189 | WP_000797270.1 | hypothetical protein | - |
| RG60_RS28745 () | 1393782..1394039 | + | 258 | WP_073528026.1 | DUF4014 family protein | - |
| RG60_RS07160 () | 1394144..1395163 | + | 1020 | WP_073519448.1 | IS110 family transposase ISEc11 | Transposase |
| RG60_RS07165 () | 1395444..1395962 | + | 519 | WP_073519617.1 | DUF551 domain-containing protein | - |
| RG60_RS07170 () | 1395959..1396354 | + | 396 | WP_073519618.1 | hypothetical protein | - |
| RG60_RS28750 () | 1396370..1396543 | - | 174 | WP_123006590.1 | hypothetical protein | - |
| RG60_RS07175 () | 1396588..1396800 | + | 213 | WP_000018421.1 | type I toxin-antitoxin system Hok family toxin | - |
| RG60_RS07180 () | 1397009..1397188 | + | 180 | WP_000119355.1 | hypothetical protein | - |
| RG60_RS07185 () | 1397207..1397692 | + | 486 | WP_000818163.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| RG60_RS07190 () | 1397624..1397803 | - | 180 | WP_073519619.1 | hypothetical protein | - |
| RG60_RS28755 () | 1397877..1398128 | + | 252 | WP_049281514.1 | hypothetical protein | - |
| RG60_RS07200 () | 1398200..1398799 | + | 600 | WP_061892354.1 | DUF1367 family protein | - |
| RG60_RS07205 () | 1398799..1399089 | + | 291 | WP_073519620.1 | DUF1364 domain-containing protein | - |
| RG60_RS07210 () | 1399086..1399628 | + | 543 | WP_073519621.1 | DUF1133 family protein | - |
| RG60_RS07235 () | 1401203..1401631 | + | 429 | WP_073519622.1 | cell envelope integrity protein TolA | - |
| RG60_RS07240 () | 1402440..1403015 | + | 576 | Protein_1339 | DUF1737 domain-containing protein | - |
| RG60_RS07245 () | 1403098..1403403 | + | 306 | WP_064768310.1 | DUF826 domain-containing protein | - |
| RG60_RS07250 () | 1403481..1403696 | + | 216 | WP_000284506.1 | class II holin family protein | - |
| RG60_RS07255 () | 1403700..1404251 | + | 552 | WP_073519623.1 | YdfR family protein | - |
| RG60_RS07260 () | 1404199..1404459 | - | 261 | WP_073519624.1 | hypothetical protein | - |
| RG60_RS07265 () | 1404574..1405107 | + | 534 | WP_061892325.1 | lysozyme | - |
| RG60_RS07270 () | 1405104..1405571 | + | 468 | WP_061892324.1 | lysis protein | - |
| RG60_RS07275 () | 1405559..1405711 | + | 153 | WP_061892323.1 | hypothetical protein | - |
| RG60_RS28760 () | 1405671..1405772 | + | 102 | Protein_1347 | transcriptional regulator | - |
| RG60_RS07280 () | 1406023..1406502 | - | 480 | WP_073519626.1 | DUF1398 family protein | - |
| RG60_RS07285 () | 1406697..1406887 | + | 191 | Protein_1349 | AlpA family transcriptional regulator | - |
| RG60_RS07290 () | 1407131..1407679 | + | 549 | WP_061892169.1 | terminase small subunit | - |
| RG60_RS07295 () | 1407609..1409579 | + | 1971 | WP_095374683.1 | phage terminase large subunit family protein | - |
| RG60_RS07300 () | 1409563..1409766 | + | 204 | WP_061892171.1 | phage tail protein | - |
| RG60_RS07305 () | 1409763..1411355 | + | 1593 | WP_061892172.1 | phage portal protein | - |
| RG60_RS07310 () | 1411345..1412850 | + | 1506 | WP_073519628.1 | S49 family peptidase | - |
| RG60_RS07315 () | 1412887..1413234 | + | 348 | WP_061892174.1 | head decoration protein | - |
| RG60_RS07320 () | 1413292..1414320 | + | 1029 | WP_073519629.1 | major capsid protein | - |
| RG60_RS07325 () | 1414373..1414753 | + | 381 | WP_061892713.1 | DNA-packaging protein FI | - |
| RG60_RS07330 () | 1414765..1415118 | + | 354 | WP_073519630.1 | head-tail joining protein | - |
| RG60_RS07335 () | 1415130..1415705 | + | 576 | WP_061892715.1 | phage tail protein | - |
| RG60_RS07340 () | 1415702..1416097 | + | 396 | WP_061892716.1 | phage minor tail U family protein | - |
| RG60_RS07345 () | 1416105..1416845 | + | 741 | WP_061892718.1 | phage tail protein | - |
| RG60_RS07350 () | 1416861..1417283 | + | 423 | WP_053294703.1 | phage minor tail protein G | - |
| RG60_RS07355 () | 1417265..1417699 | + | 435 | WP_073519631.1 | phage tail assembly protein T | - |
| RG60_RS07360 () | 1417692..1420271 | + | 2580 | WP_073519632.1 | phage tail tape measure protein | - |
| RG60_RS07365 () | 1420268..1420597 | + | 330 | WP_021528540.1 | phage tail protein | - |
| RG60_RS07370 () | 1420597..1421295 | + | 699 | WP_001152619.1 | phage minor tail protein L | - |
| RG60_RS07375 () | 1421301..1422044 | + | 744 | WP_073519633.1 | C40 family peptidase | - |
| RG60_RS07380 () | 1421981..1422614 | + | 634 | Protein_1368 | tail assembly protein | - |
| RG60_RS07385 () | 1422675..1426088 | + | 3414 | WP_073519634.1 | host specificity protein J | - |
| RG60_RS07390 () | 1426159..1426758 | + | 600 | WP_001233071.1 | hypothetical protein | VF |
| RG60_RS28060 () | 1426823..1427992 | + | 1170 | WP_077897941.1 | prophage tail fiber N-terminal domain-containing protein | - |
| RG60_RS07410 () | 1427976..1428542 | + | 567 | WP_077875810.1 | DUF4376 domain-containing protein | - |
| RG60_RS07415 () | 1428535..1428918 | + | 384 | WP_061892726.1 | DUF1353 domain-containing protein | - |
| RG60_RS07420 () | 1429204..1429386 | + | 183 | WP_077897940.1 | DUF1353 domain-containing protein | - |
| RG60_RS07425 () | 1431286..1431942 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| RG60_RS07430 () | 1431943..1432134 | - | 192 | WP_001296140.1 | YebW family protein | - |
| RG60_RS07435 () | 1432239..1432475 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG60_RS07440 () | 1432593..1434032 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG60_RS07445 () | 1434112..1436745 | - | 2634 | WP_001299674.1 | hypothetical protein | VF |
| RG60_RS07450 () | 1436714..1437997 | - | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| RG60_RS07455 () | 1438127..1438624 | + | 498 | WP_073519635.1 | L-methionine (R)-S-oxide reductase | - |
| RG60_RS07460 () | 1438721..1439419 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| RG60_RS07465 () | 1439439..1441487 | + | 2049 | WP_001326055.1 | carboxy terminal-processing peptidase | - |
| RG60_RS07470 () | 1441679..1442560 | + | 882 | WP_000984517.1 | protease HtpX | - |
| RG60_RS07475 () | 1442606..1443979 | - | 1374 | WP_001127216.1 | MFS transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|