MGE detailed information
MGE type: Prophage MGE length: 63936 bp
Accession: NZ_CP010196 Location: 1771753..1835688 Organism: Escherichia coli strain M9 Replicon: chromosome
Accession: NZ_CP010196 Location: 1771753..1835688 Organism: Escherichia coli strain M9 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG58_RS09295 () | 1767193..1768566 | + | 1374 | WP_001127216.1 | MFS transporter | - |
| RG58_RS09300 () | 1768612..1769493 | - | 882 | WP_000984517.1 | protease HtpX | - |
| RG58_RS09305 () | 1769685..1771733 | - | 2049 | WP_001326055.1 | carboxy terminal-processing peptidase | - |
| RG58_RS09310 () | 1771753..1772451 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| RG58_RS09315 () | 1772548..1773045 | - | 498 | WP_073519635.1 | L-methionine (R)-S-oxide reductase | - |
| RG58_RS09320 () | 1773175..1774458 | + | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| RG58_RS09325 () | 1774427..1777060 | + | 2634 | WP_001299674.1 | hypothetical protein | VF |
| RG58_RS09330 () | 1777140..1778579 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG58_RS09335 () | 1778697..1778933 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG58_RS09340 () | 1779038..1779229 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG58_RS09345 () | 1779230..1779886 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| RG58_RS09350 () | 1781786..1781968 | - | 183 | WP_077897940.1 | DUF1353 domain-containing protein | - |
| RG58_RS09355 () | 1782254..1782637 | - | 384 | WP_061892726.1 | DUF1353 domain-containing protein | - |
| RG58_RS09360 () | 1782630..1783196 | - | 567 | WP_077897937.1 | DUF4376 domain-containing protein | - |
| RG58_RS27980 () | 1783180..1784349 | - | 1170 | WP_077897941.1 | prophage tail fiber N-terminal domain-containing protein | - |
| RG58_RS09380 () | 1784414..1785013 | - | 600 | WP_001233071.1 | Outer membrane protein X | VF |
| RG58_RS09385 () | 1785084..1788497 | - | 3414 | WP_073519634.1 | host specificity protein J | - |
| RG58_RS09390 () | 1788558..1789191 | - | 634 | Protein_1708 | tail assembly protein | - |
| RG58_RS09395 () | 1789128..1789871 | - | 744 | WP_073519633.1 | C40 family peptidase | - |
| RG58_RS09400 () | 1789877..1790575 | - | 699 | WP_001152619.1 | phage minor tail protein L | - |
| RG58_RS09405 () | 1790575..1790904 | - | 330 | WP_021528540.1 | phage tail protein | - |
| RG58_RS09410 () | 1790901..1793480 | - | 2580 | WP_073519632.1 | phage tail tape measure protein | - |
| RG58_RS09415 () | 1793473..1793907 | - | 435 | WP_073519631.1 | phage tail assembly protein T | - |
| RG58_RS09420 () | 1793889..1794311 | - | 423 | WP_053294703.1 | phage minor tail protein G | - |
| RG58_RS09425 () | 1794327..1795067 | - | 741 | WP_061892718.1 | phage tail protein | - |
| RG58_RS09430 () | 1795075..1795470 | - | 396 | WP_061892716.1 | phage minor tail U family protein | - |
| RG58_RS09435 () | 1795467..1796042 | - | 576 | WP_061892715.1 | phage tail protein | - |
| RG58_RS09440 () | 1796054..1796407 | - | 354 | WP_073519630.1 | head-tail joining protein | - |
| RG58_RS09445 () | 1796419..1796799 | - | 381 | WP_061892713.1 | DNA-packaging protein FI | - |
| RG58_RS09450 () | 1796852..1797880 | - | 1029 | WP_073519629.1 | major capsid protein | - |
| RG58_RS09455 () | 1797938..1798285 | - | 348 | WP_061892174.1 | head decoration protein | - |
| RG58_RS09460 () | 1798322..1799827 | - | 1506 | WP_073519628.1 | S49 family peptidase | - |
| RG58_RS09465 () | 1799817..1801409 | - | 1593 | WP_061892172.1 | phage portal protein | - |
| RG58_RS09470 () | 1801406..1801609 | - | 204 | WP_061892171.1 | phage tail protein | - |
| RG58_RS09475 () | 1801593..1803521 | - | 1929 | WP_073519627.1 | phage terminase large subunit family protein | - |
| RG58_RS09480 () | 1803493..1804041 | - | 549 | WP_061892169.1 | terminase small subunit | - |
| RG58_RS09490 () | 1804757..1805149 | + | 393 | WP_073528025.1 | DUF1398 family protein | - |
| RG58_RS09495 () | 1805461..1805613 | - | 153 | WP_061892323.1 | hypothetical protein | - |
| RG58_RS09500 () | 1805601..1806068 | - | 468 | WP_061892324.1 | lysis protein | - |
| RG58_RS09505 () | 1806065..1806598 | - | 534 | WP_061892325.1 | lysozyme | - |
| RG58_RS09510 () | 1806713..1806973 | + | 261 | WP_073519624.1 | hypothetical protein | - |
| RG58_RS09515 () | 1806921..1807472 | - | 552 | WP_073519623.1 | YdfR family protein | - |
| RG58_RS09520 () | 1807476..1807691 | - | 216 | WP_000284506.1 | class II holin family protein | - |
| RG58_RS09525 () | 1807769..1808074 | - | 306 | WP_064768310.1 | DUF826 domain-containing protein | - |
| RG58_RS09530 () | 1808154..1808732 | - | 579 | Protein_1735 | DUF1737 domain-containing protein | - |
| RG58_RS09535 () | 1809541..1809969 | - | 429 | WP_073519622.1 | cell envelope integrity protein TolA | - |
| RG58_RS09560 () | 1811544..1812086 | - | 543 | WP_073519621.1 | DUF1133 family protein | - |
| RG58_RS09565 () | 1812083..1812373 | - | 291 | WP_073519620.1 | DUF1364 domain-containing protein | - |
| RG58_RS09570 () | 1812373..1812972 | - | 600 | WP_061892354.1 | DUF1367 family protein | - |
| RG58_RS28580 () | 1813044..1813256 | - | 213 | WP_000411312.1 | hypothetical protein | - |
| RG58_RS09585 () | 1813480..1813965 | - | 486 | WP_000818163.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| RG58_RS09590 () | 1813984..1814163 | - | 180 | WP_000119355.1 | hypothetical protein | - |
| RG58_RS09595 () | 1814372..1814527 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| RG58_RS09600 () | 1814818..1815213 | - | 396 | WP_073519618.1 | hypothetical protein | - |
| RG58_RS09605 () | 1815210..1815728 | - | 519 | WP_073519617.1 | DUF551 domain-containing protein | - |
| RG58_RS09610 () | 1816009..1817028 | - | 1020 | WP_073519448.1 | IS110 family transposase ISEc11 | Transposase |
| RG58_RS09615 () | 1817133..1817390 | - | 258 | WP_073528026.1 | DUF4014 family protein | - |
| RG58_RS09625 () | 1817912..1818112 | - | 201 | WP_073519615.1 | hypothetical protein | - |
| RG58_RS09630 () | 1818109..1818531 | - | 423 | WP_073519614.1 | DUF977 family protein | - |
| RG58_RS09635 () | 1818547..1819308 | - | 762 | WP_073519613.1 | DUF1627 domain-containing protein | - |
| RG58_RS09640 () | 1819331..1820077 | - | 747 | WP_073519612.1 | IS21 family transposase ISCsa9 | Transposase |
| RG58_RS09645 () | 1820084..1821214 | - | 1131 | WP_073519611.1 | hypothetical protein | - |
| RG58_RS09650 () | 1821292..1821714 | - | 423 | WP_000702025.1 | hypothetical protein | - |
| RG58_RS09655 () | 1821711..1821953 | - | 243 | WP_001033914.1 | helix-turn-helix domain-containing protein | - |
| RG58_RS09660 () | 1822050..1822469 | + | 420 | WP_000410105.1 | helix-turn-helix domain-containing protein | - |
| RG58_RS09665 () | 1822769..1822987 | + | 219 | WP_000232638.1 | hypothetical protein | - |
| RG58_RS09670 () | 1822953..1823147 | - | 195 | WP_001419881.1 | hypothetical protein | - |
| RG58_RS09680 () | 1823677..1823898 | + | 222 | WP_073519610.1 | cell division protein FtsZ | - |
| RG58_RS09685 () | 1823892..1824068 | + | 177 | WP_000245528.1 | hypothetical protein | - |
| RG58_RS09690 () | 1824143..1824418 | + | 276 | WP_001452559.1 | hypothetical protein | - |
| RG58_RS09695 () | 1824517..1827150 | + | 2634 | WP_021527613.1 | exodeoxyribonuclease VIII | - |
| RG58_RS09700 () | 1827143..1827952 | + | 810 | WP_000166317.1 | recombination protein RecT | - |
| RG58_RS09705 () | 1828009..1828203 | + | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| RG58_RS09710 () | 1828196..1828384 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - () | 1828202..1828380 | - | 179 | NuclAT_0 | - | - |
| - () | 1828202..1828380 | - | 179 | NuclAT_0 | - | - |
| - () | 1828202..1828380 | - | 179 | NuclAT_0 | - | - |
| - () | 1828202..1828380 | - | 179 | NuclAT_0 | - | - |
| RG58_RS09715 () | 1828491..1828772 | + | 282 | WP_001311878.1 | excisionase | - |
| RG58_RS09720 () | 1828738..1829814 | + | 1077 | WP_001189091.1 | hypothetical protein ; Integrase | Integrase |
| - () | 1829945..1830179 | + | 235 | - | - | Antitoxin Detail |
| - () | 1829946..1830049 | - | 104 | - | - | Toxin Detail |
| RG58_RS09730 () | 1830207..1830548 | - | 342 | WP_000976492.1 | YebY family protein | - |
| RG58_RS09735 () | 1830561..1831433 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG58_RS09740 () | 1831437..1831811 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG58_RS09745 () | 1831950..1832180 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG58_RS09750 () | 1832282..1832938 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| RG58_RS09755 () | 1832962..1833624 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG58_RS09760 () | 1833621..1835688 | - | 2068 | Protein_1773 | oligopeptidase B | - |
| RG58_RS09770 () | 1835897..1836556 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| RG58_RS09785 () | 1836882..1837238 | - | 357 | WP_001295500.1 | protein YebF | - |
| RG58_RS09790 () | 1837305..1837595 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| RG58_RS09795 () | 1837729..1838907 | + | 1179 | WP_000173491.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| RG58_RS09800 () | 1838963..1839604 | - | 642 | WP_000800523.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|