Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1829945..1830179 | Replicon | chromosome |
| Accession | NZ_CP010196 | ||
| Organism | Escherichia coli strain M9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1829946..1830049 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1829945..1830179 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG58_RS09700 | 1827143..1827952 | + | 810 | WP_000166317.1 | recombination protein RecT | - |
| RG58_RS09705 | 1828009..1828203 | + | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| RG58_RS09710 | 1828196..1828384 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 1828202..1828380 | - | 179 | NuclAT_0 | - | - |
| - | 1828202..1828380 | - | 179 | NuclAT_0 | - | - |
| - | 1828202..1828380 | - | 179 | NuclAT_0 | - | - |
| - | 1828202..1828380 | - | 179 | NuclAT_0 | - | - |
| RG58_RS09715 | 1828491..1828772 | + | 282 | WP_001311878.1 | excisionase | - |
| RG58_RS09720 | 1828738..1829814 | + | 1077 | WP_001189091.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1829945..1830179 | + | 235 | - | - | Antitoxin |
| - | 1829946..1830049 | - | 104 | - | - | Toxin |
| RG58_RS09730 | 1830207..1830548 | - | 342 | WP_000976492.1 | YebY family protein | - |
| RG58_RS09735 | 1830561..1831433 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG58_RS09740 | 1831437..1831811 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG58_RS09745 | 1831950..1832180 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG58_RS09750 | 1832282..1832938 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| RG58_RS09755 | 1832962..1833624 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1771753..1835688 | 63935 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51300 NZ_CP010196:c1830049-1829946 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT51300 NZ_CP010196:1829945-1830179 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
