MGE detailed information
MGE type: Prophage MGE length: 58556 bp
Accession: NZ_CP010186 Location: 1777594..1836149 Organism: Escherichia coli strain M6 Replicon: chromosome
Accession: NZ_CP010186 Location: 1777594..1836149 Organism: Escherichia coli strain M6 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG56_RS09320 () | 1773008..1773505 | - | 498 | WP_073519635.1 | L-methionine (R)-S-oxide reductase | - |
| RG56_RS09325 () | 1773635..1774918 | + | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| RG56_RS09330 () | 1774887..1777520 | + | 2634 | WP_001299674.1 | lipid-binding membrane homeostasis protein YebT | - |
| RG56_RS09335 () | 1777600..1779039 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG56_RS09340 () | 1779157..1779393 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG56_RS09345 () | 1779498..1779689 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG56_RS09350 () | 1779690..1780346 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| RG56_RS09355 () | 1782246..1782428 | - | 183 | WP_077897940.1 | DUF1353 domain-containing protein | - |
| RG56_RS09360 () | 1782714..1783097 | - | 384 | WP_061892726.1 | DUF1353 domain-containing protein | - |
| RG56_RS09365 () | 1783090..1783656 | - | 567 | WP_077898612.1 | DUF4376 domain-containing protein | - |
| RG56_RS28030 () | 1783640..1784809 | - | 1170 | WP_077897941.1 | prophage tail fiber N-terminal domain-containing protein | - |
| RG56_RS09385 () | 1784874..1785473 | - | 600 | WP_001233071.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| RG56_RS09390 () | 1785544..1788957 | - | 3414 | WP_073546134.1 | host specificity protein J | - |
| RG56_RS09395 () | 1789018..1789651 | - | 634 | Protein_1710 | tail assembly protein | - |
| RG56_RS09400 () | 1789588..1790331 | - | 744 | WP_073519633.1 | C40 family peptidase | - |
| RG56_RS09405 () | 1790337..1791035 | - | 699 | WP_001152619.1 | phage minor tail protein L | - |
| RG56_RS09410 () | 1791035..1791364 | - | 330 | WP_021528540.1 | phage tail protein | - |
| RG56_RS09415 () | 1791361..1793940 | - | 2580 | WP_073519632.1 | phage tail tape measure protein | - |
| RG56_RS09420 () | 1793933..1794367 | - | 435 | WP_073519631.1 | phage tail assembly protein T | - |
| RG56_RS09425 () | 1794349..1794771 | - | 423 | WP_053294703.1 | phage minor tail protein G | - |
| RG56_RS09430 () | 1794787..1795527 | - | 741 | WP_061892718.1 | phage tail protein | - |
| RG56_RS09435 () | 1795535..1795930 | - | 396 | WP_061892716.1 | phage minor tail U family protein | - |
| RG56_RS09440 () | 1795927..1796502 | - | 576 | WP_061892715.1 | phage tail protein | - |
| RG56_RS09445 () | 1796514..1796867 | - | 354 | WP_073519630.1 | head-tail joining protein | - |
| RG56_RS09450 () | 1796879..1797259 | - | 381 | WP_061892713.1 | DNA-packaging protein FI | - |
| RG56_RS09455 () | 1797312..1798340 | - | 1029 | WP_073519629.1 | major capsid protein | - |
| RG56_RS09460 () | 1798398..1798745 | - | 348 | WP_061892174.1 | head decoration protein | - |
| RG56_RS09465 () | 1798782..1800287 | - | 1506 | WP_073519628.1 | S49 family peptidase | - |
| RG56_RS09470 () | 1800277..1801869 | - | 1593 | WP_061892172.1 | phage portal protein | - |
| RG56_RS09475 () | 1801866..1802069 | - | 204 | WP_061892171.1 | phage tail protein | - |
| RG56_RS09480 () | 1802053..1803981 | - | 1929 | WP_073519627.1 | phage terminase large subunit family protein | - |
| RG56_RS09485 () | 1803953..1804501 | - | 549 | WP_061892169.1 | terminase small subunit | - |
| RG56_RS09495 () | 1805217..1805609 | + | 393 | WP_073528025.1 | DUF1398 family protein | - |
| RG56_RS09500 () | 1805921..1806073 | - | 153 | WP_061892323.1 | hypothetical protein | - |
| RG56_RS09505 () | 1806061..1806528 | - | 468 | WP_061892324.1 | lysis protein | - |
| RG56_RS09510 () | 1806525..1807058 | - | 534 | WP_061892325.1 | lysozyme | - |
| RG56_RS09520 () | 1807381..1807932 | - | 552 | WP_073519623.1 | YdfR family protein | - |
| RG56_RS09525 () | 1807936..1808151 | - | 216 | WP_000284506.1 | class II holin family protein | - |
| RG56_RS09530 () | 1808229..1808534 | - | 306 | WP_064768310.1 | DUF826 domain-containing protein | - |
| RG56_RS09535 () | 1808614..1809192 | - | 579 | Protein_1736 | DUF1737 domain-containing protein | - |
| RG56_RS09540 () | 1810001..1810429 | - | 429 | WP_073519622.1 | cell envelope integrity protein TolA | - |
| RG56_RS09565 () | 1812004..1812546 | - | 543 | WP_073519621.1 | DUF1133 family protein | - |
| RG56_RS09570 () | 1812543..1812833 | - | 291 | WP_073519620.1 | DUF1364 domain-containing protein | - |
| RG56_RS09575 () | 1812833..1813432 | - | 600 | WP_061892354.1 | DUF1367 family protein | - |
| RG56_RS28645 () | 1813504..1813716 | - | 213 | WP_000411312.1 | hypothetical protein | - |
| RG56_RS09590 () | 1813940..1814425 | - | 486 | WP_000818163.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| RG56_RS09595 () | 1814444..1814623 | - | 180 | WP_000119355.1 | hypothetical protein | - |
| RG56_RS09600 () | 1814832..1814987 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| RG56_RS09605 () | 1815278..1815673 | - | 396 | WP_073519618.1 | hypothetical protein | - |
| RG56_RS09610 () | 1815670..1816188 | - | 519 | WP_073519617.1 | DUF551 domain-containing protein | - |
| RG56_RS09615 () | 1816469..1817489 | - | 1021 | Protein_1747 | IS110 family transposase | - |
| RG56_RS09620 () | 1817594..1817851 | - | 258 | WP_073528026.1 | DUF4014 family protein | - |
| RG56_RS09630 () | 1818373..1818573 | - | 201 | WP_073519615.1 | hypothetical protein | - |
| RG56_RS09635 () | 1818570..1818992 | - | 423 | WP_073519614.1 | DUF977 family protein | - |
| RG56_RS09640 () | 1819008..1819769 | - | 762 | WP_073519613.1 | DUF1627 domain-containing protein | - |
| RG56_RS09645 () | 1819792..1820538 | - | 747 | WP_073519612.1 | ATP-binding protein | - |
| RG56_RS09650 () | 1820545..1821675 | - | 1131 | WP_073519611.1 | hypothetical protein | - |
| RG56_RS09655 () | 1821753..1822175 | - | 423 | WP_000702025.1 | hypothetical protein | - |
| RG56_RS09660 () | 1822172..1822414 | - | 243 | WP_001033914.1 | helix-turn-helix domain-containing protein | - |
| RG56_RS09665 () | 1822511..1822930 | + | 420 | WP_000410105.1 | helix-turn-helix domain-containing protein | - |
| RG56_RS09670 () | 1823230..1823448 | + | 219 | WP_000232638.1 | hypothetical protein | - |
| RG56_RS09675 () | 1823414..1823608 | - | 195 | WP_001419881.1 | hypothetical protein | - |
| RG56_RS09685 () | 1824138..1824359 | + | 222 | WP_073519610.1 | cell division protein FtsZ | - |
| RG56_RS09690 () | 1824353..1824529 | + | 177 | WP_000245528.1 | hypothetical protein | - |
| RG56_RS09695 () | 1824604..1824879 | + | 276 | WP_001452559.1 | hypothetical protein | - |
| RG56_RS09700 () | 1824978..1827611 | + | 2634 | WP_021527613.1 | exodeoxyribonuclease VIII | - |
| RG56_RS09705 () | 1827604..1828413 | + | 810 | WP_000166317.1 | recombination protein RecT | - |
| RG56_RS09710 () | 1828470..1828664 | + | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| RG56_RS09715 () | 1828657..1828845 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - () | 1828663..1828841 | - | 179 | NuclAT_0 | - | - |
| - () | 1828663..1828841 | - | 179 | NuclAT_0 | - | - |
| - () | 1828663..1828841 | - | 179 | NuclAT_0 | - | - |
| - () | 1828663..1828841 | - | 179 | NuclAT_0 | - | - |
| RG56_RS09720 () | 1828952..1829233 | + | 282 | WP_001311878.1 | excisionase | - |
| RG56_RS09725 () | 1829199..1830275 | + | 1077 | WP_001189091.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - () | 1830406..1830640 | + | 235 | - | - | Antitoxin Detail |
| - () | 1830407..1830510 | - | 104 | - | - | Toxin Detail |
| RG56_RS09735 () | 1830668..1831009 | - | 342 | WP_000976492.1 | YebY family protein | - |
| RG56_RS09740 () | 1831022..1831894 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG56_RS09745 () | 1831898..1832272 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG56_RS09750 () | 1832411..1832641 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG56_RS09755 () | 1832743..1833399 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| RG56_RS09760 () | 1833423..1834085 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG56_RS09765 () | 1834082..1836149 | - | 2068 | Protein_1774 | oligopeptidase B | - |
| RG56_RS09775 () | 1836358..1837017 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| RG56_RS09790 () | 1837343..1837699 | - | 357 | WP_001295500.1 | protein YebF | - |
| RG56_RS09795 () | 1837766..1838056 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| RG56_RS09800 () | 1838190..1839368 | + | 1179 | WP_000173491.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| RG56_RS09805 () | 1839424..1840065 | - | 642 | WP_000800523.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|