NZ_CP0101841..200925

MGE detailed information

MGE type: Conjugative plasmid        MGE length: 200925 bp
Accession: NZ_CP010184        Location: 1..200925         Organism: Escherichia coli strain M3       Replicon: plasmid A


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RG55_RS25915 () 1313..1939 + 627 WP_000587689.1 ParA family plasmid-partitioning AAA ATPase -
RG55_RS28495 () 1936..2238 + 303 WP_046201803.1 hypothetical protein -
RG55_RS25935 () 2626..3686 + 1061 Protein_3 IS3 family transposase ISBcen15 Transposase
RG55_RS25940 () 4119..4775 + 657 WP_046201804.1 GntR family transcriptional regulator -
RG55_RS25945 () 4826..5590 - 765 WP_046201805.1 5-keto-D-gluconate 5-reductase VF
RG55_RS25950 () 5614..6078 - 465 WP_046201806.1 YhcH/YjgK/YiaL family protein -
RG55_RS25955 () 6090..7025 - 936 WP_046201807.1 sugar kinase -
RG55_RS25960 () 7022..7993 - 972 WP_046201808.1 C-terminal binding protein -
RG55_RS25965 () 8286..9560 + 1275 WP_046201809.1 MFS transporter -
RG55_RS25975 () 10078..10479 - 402 WP_001398199.1 type II toxin-antitoxin system toxin endoribonuclease PemK -
RG55_RS28195 () 10412..10669 - 258 WP_000557619.1 type II toxin-antitoxin system antitoxin PemI -
RG55_RS25985 () 10762..11415 - 654 WP_046201810.1 CPBP family intramembrane metalloprotease -
RG55_RS28205 () 11736..11846 + 111 Protein_13 IS481 family transposase -
RG55_RS25995 () 11992..15921 - 3930 WP_073535065.1 Serine protease EspC VF
RG55_RS26000 () 16465..16863 - 399 WP_046201812.1 hypothetical protein -
RG55_RS26005 () 16875..17228 - 354 WP_052734131.1 hypothetical protein -
RG55_RS26010 () 17598..18017 - 420 WP_046201814.1 Exc2 family lipoprotein -
RG55_RS28210 () 18569..18961 + 393 Protein_18 hypothetical protein -
RG55_RS26020 () 19048..19698 + 651 WP_000993925.1 IS66 family transposase IS679 Transposase
RG55_RS26025 () 19698..20045 + 348 WP_000623562.1 IS66 family transposase ISCro1 Transposase
RG55_RS26030 () 20065..21636 + 1572 WP_046201816.1 IS66 family transposase ISCro1 Transposase
RG55_RS26035 () 21767..22189 - 423 WP_046201817.1 DUF1380 family protein -
RG55_RS26040 () 22236..22538 - 303 WP_139108889.1 antirestriction protein -
RG55_RS28500 () 22845..23564 - 720 Protein_24 hypothetical protein -
RG55_RS26055 () 23725..24894 + 1170 WP_046201818.1 IS200-IS605 family transposase ISEc46 Transposase
RG55_RS26060 () 24934..25107 + 174 Protein_26 DUF4113 domain-containing protein -
RG55_RS26065 () 25248..26210 - 963 WP_046201819.1 ParB/RepB/Spo0J family partition protein -
RG55_RS26070 () 26207..27412 - 1206 WP_000817642.1 Plasmid partition protein A VF
RG55_RS26080 () 27786..27998 + 213 WP_000402944.1 hypothetical protein -
RG55_RS26085 () 28171..28422 + 252 WP_001132895.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin Detail
RG55_RS26090 () 28419..28706 + 288 WP_001270421.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
RG55_RS26095 () 28720..28979 + 260 Protein_32 hypothetical protein -
RG55_RS26100 () 28992..29282 + 291 WP_046201820.1 hypothetical protein -
RG55_RS28215 () 29329..29696 + 368 Protein_34 IS3 family transposase ISKpn37 Transposase
RG55_RS26120 () 30340..31317 + 978 WP_000361612.1 RepB family plasmid replication initiator protein -
RG55_RS26125 () 31596..32336 - 741 WP_046201823.1 tyrosine-type recombinase/integrase -
RG55_RS26130 () 32457..32618 - 162 WP_064756529.1 hypothetical protein -
RG55_RS27630 () 32930..33882 - 953 Protein_38 IS630 family transposase ISSpu2 Transposase
RG55_RS26155 () 34345..34848 - 504 WP_000450723.1 hypothetical protein -
RG55_RS26160 () 35641..36117 + 477 WP_000072543.1 hypothetical protein VF
RG55_RS26165 () 36120..37598 + 1479 WP_000150697.1 hypothetical protein VF
RG55_RS26170 () 37608..38126 + 519 WP_046201825.1 hypothetical protein -
RG55_RS26175 () 38134..38556 + 423 WP_046201826.1 lysozyme family protein -
RG55_RS26180 () 38549..40351 + 1803 WP_046201827.1 type VI secretion system baseplate subunit TssF -
RG55_RS26185 () 40342..41274 + 933 WP_000268393.1 type VI secretion system baseplate subunit TssG -
RG55_RS26190 () 41287..43269 + 1983 WP_073520792.1 type VI secretion system tip protein VgrG -
RG55_RS26195 () 43280..43747 + 468 WP_000133489.1 hypothetical protein -
RG55_RS26200 () 43757..44056 + 300 WP_032246098.1 PAAR domain-containing protein -
RG55_RS26205 () 44060..45136 + 1077 WP_049590598.1 hypothetical protein VF
RG55_RS26210 () 45144..45686 + 543 WP_000152800.1 type VI secretion lipoprotein TssJ -
RG55_RS26215 () 45705..47087 + 1383 WP_073520793.1 type VI secretion system baseplate subunit TssK -
RG55_RS26225 () 47440..48054 + 615 WP_046201718.1 DotU family type IV/VI secretion system protein -
RG55_RS26230 () 48061..51465 + 3405 WP_073520794.1 type VI secretion protein -
RG55_RS26235 () 51469..54000 + 2532 WP_073520795.1 Protein ClpV1 VF
RG55_RS26240 () 54673..55812 + 1140 WP_073520796.1 type VI secretion system ImpA family N-terminal domain-containing protein -
RG55_RS26245 () 56312..56902 + 591 WP_073520797.1 hypothetical protein VF
RG55_RS28230 () 57185..57307 + 123 Protein_57 IS1 family transposase -
RG55_RS27645 () 57571..58167 + 597 WP_077787744.1 hypothetical protein -
RG55_RS26255 () 58176..58648 - 473 Protein_59 IS3 family transposase IS1351 Transposase
RG55_RS26260 () 58662..58796 + 135 Protein_60 transposase -
RG55_RS27650 () 59382..59603 + 222 WP_024179415.1 hypothetical protein -
RG55_RS28655 () 59817..59909 - 93 Protein_62 IS21 family transposase ISEc12 Transposase
RG55_RS26275 () 60157..60386 + 230 Protein_63 alpha/beta hydrolase -
RG55_RS27655 () 60610..60973 + 364 Protein_64 helix-turn-helix domain containing protein -
RG55_RS28235 () 60977..61189 + 213 Protein_65 IS21 family transposase -
RG55_RS26290 () 61196..61564 - 369 WP_032246119.1 hypothetical protein -
RG55_RS26295 () 62465..62572 - 108 Protein_67 IS3 family transposase -
RG55_RS26300 () 62575..63074 - 500 Protein_68 transposase -
RG55_RS26305 () 63115..63306 + 192 Protein_69 recombinase family protein -
RG55_RS26315 () 63569..63799 - 231 WP_046201726.1 hypothetical protein -
RG55_RS26320 () 64039..64164 - 126 Protein_71 IS66 family transposase IS682 Transposase
RG55_RS26325 () 64161..64595 - 435 WP_046201727.1 IS66 family transposase ISEc43 Transposase
RG55_RS27660 () 65165..65577 - 413 Protein_73 transposase -
RG55_RS26335 () 66007..69771 + 3765 WP_073535066.1 Serine protease EspC VF
RG55_RS26340 () 69854..70146 + 293 Protein_75 hypothetical protein VF
RG55_RS26345 () 70829..71329 - 501 WP_034173271.1 helix-turn-helix transcriptional regulator -
RG55_RS26350 () 71358..71840 - 483 WP_046201729.1 DNA-directed RNA polymerase sigma-70 factor -
RG55_RS26355 () 71962..75786 - 3825 WP_073535067.1 RTX toxin -
RG55_RS26360 () 75991..77238 - 1248 WP_046201730.1 HlyD family efflux transporter periplasmic adaptor subunit -
RG55_RS26365 () 77298..79445 - 2148 WP_000835433.1 Toxin RTX-I translocation ATP-binding protein VF
RG55_RS26370 () 79470..80711 - 1242 WP_046201731.1 TolC family protein -
RG55_RS26375 () 80774..81067 - 294 WP_071886270.1 Major pilu subunit operon regulatory protein PapB VF
RG55_RS27665 () 82370..82559 - 190 Protein_83 site-specific integrase -
RG55_RS26390 () 83066..83281 + 216 Protein_84 TIGR00156 family protein -
RG55_RS26395 () 83312..83730 - 419 Protein_85 Tn3 family transposase -
RG55_RS26400 () 84199..85044 - 846 WP_052734128.1 AraC family transcriptional regulator -
RG55_RS26405 () 85410..85994 + 585 WP_077787746.1 type 1 fimbrial protein -
RG55_RS26410 () 86101..86820 + 720 WP_073520801.1 Chaperone protein FocC VF
RG55_RS26415 () 86842..89352 + 2511 WP_046201734.1 Outer membrane usher protein FimD VF
RG55_RS26420 () 89362..90273 + 912 WP_139108882.1 fimbrial protein -
RG55_RS26425 () 90355..90663 + 309 WP_046201735.1 Cyclic di-GMP phosphodiesterase PdeL VF
RG55_RS28660 () 90954..91262 - 309 Protein_92 hemagglutinin -
RG55_RS26445 () 91898..101590 - 9693 WP_046201737.1 tRNA nuclease CdiA VF
RG55_RS26450 () 101603..103375 - 1773 WP_046201738.1 Hemolysin transporter protein ShlB VF
RG55_RS26455 () 103598..103846 - 249 Protein_95 DNA-binding protein -
RG55_RS26460 () 103932..104366 + 435 WP_053265047.1 IS66 family transposase ISEc43 Transposase
RG55_RS26465 () 104363..104668 + 306 WP_000624654.1 IS66 family transposase IS682 Transposase
RG55_RS27670 () 104744..106286 + 1543 Protein_98 IS66 family transposase -
RG55_RS26485 () 106317..106579 + 263 Protein_99 hypothetical protein -
RG55_RS26490 () 106681..107690 - 1010 Protein_100 IS3 family transposase IS3F Transposase
RG55_RS26500 () 107896..108126 + 231 Protein_101 IS1 family transposase -
RG55_RS26505 () 108318..108896 + 579 WP_073520802.1 Tn3 family transposase ISPsy39 Transposase
RG55_RS26510 () 108889..109161 + 273 WP_046201741.1 hypothetical protein -
RG55_RS26515 () 109205..109533 - 329 Protein_104 IS3 family transposase IS911 Transposase
RG55_RS28255 () 109937..110005 + 69 Protein_105 3'-5' exonuclease -
RG55_RS26520 () 110278..110631 - 354 WP_171819440.1 cytochrome b562 family protein -
RG55_RS26525 () 110711..112921 - 2211 WP_073520803.1 Catalase-peroxidase VF
RG55_RS26530 () 113267..117379 - 4113 WP_073520804.1 Serine protease pic autotransporter VF
RG55_RS26535 () 118643..119307 + 665 Protein_109 hypothetical protein -
RG55_RS26540 () 119450..119749 - 300 WP_046201747.1 type II toxin-antitoxin system RelE/ParE family toxin -
RG55_RS26545 () 119739..120002 - 264 WP_046201748.1 hypothetical protein -
RG55_RS26565 () 120941..121798 - 858 WP_034173827.1 incFII family plasmid replication initiator RepA -
RG55_RS26570 () 121791..121865 - 75 WP_001365705.1 RepA leader peptide Tap -
RG55_RS26580 () 122112..122360 - 249 WP_034173828.1 replication regulatory protein RepA -
RG55_RS26590 () 123093..124202 - 1110 WP_034173829.1 N-acetylneuraminate epimerase -
RG55_RS26595 () 124212..124922 - 711 WP_000748140.1 N-acetylneuraminic acid channel protein -
RG55_RS26600 () 124976..125797 - 822 WP_052734129.1 alpha/beta hydrolase -
RG55_RS26605 () 125813..127279 - 1467 WP_034173830.1 MFS transporter -
RG55_RS26610 () 127350..128225 - 876 WP_034173861.1 N-acetylmannosamine kinase -
RG55_RS26615 () 128285..129184 - 900 WP_046201838.1 N-acetylneuraminate lyase -
RG55_RS26620 () 129321..130406 - 1086 WP_077787749.1 hypothetical protein -
RG55_RS26625 () 130476..131204 + 729 WP_046201750.1 transcriptional regulator NanR -
RG55_RS26630 () 131229..132113 - 885 WP_034173833.1 alpha/beta hydrolase -
RG55_RS28665 () 132260..132361 + 102 Protein_124 transposase -
RG55_RS26645 () 132979..133539 - 561 WP_046201751.1 fertility inhibition protein FinO -
RG55_RS26650 () 133594..134328 - 735 WP_075262006.1 type-F conjugative transfer system pilin acetylase TraX -
RG55_RS26655 () 134351..134782 - 432 WP_000451345.1 hypothetical protein -
RG55_RS26660 () 134832..140102 - 5271 Protein_128 Multifunctional conjugation protein TraI Relaxase
RG55_RS26665 () 140102..142309 - 2208 WP_046201753.1 type IV conjugative transfer system coupling protein TraD -
RG55_RS26670 () 142561..143292 - 732 WP_046201754.1 complement resistance protein TraT -
RG55_RS26675 () 143306..143815 - 510 WP_000628099.1 conjugal transfer entry exclusion protein TraS -
RG55_RS26680 () 143812..146658 - 2847 WP_049590596.1 conjugal transfer mating pair stabilization protein TraG -
RG55_RS26685 () 146655..148028 - 1374 WP_046201756.1 conjugal transfer protein TraH -
RG55_RS26690 () 148015..148440 - 426 WP_073520805.1 F-type conjugal transfer protein TrbF -
RG55_RS26695 () 148361..148735 - 375 WP_073520806.1 P-type conjugative transfer protein TrbJ -
RG55_RS26700 () 148665..149210 - 546 WP_046201758.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
RG55_RS26705 () 149197..149478 - 282 WP_073520807.1 type-F conjugative transfer system pilin chaperone TraQ -
RG55_RS26710 () 149544..149990 - 447 WP_046201760.1 hypothetical protein -
RG55_RS26715 () 150076..150441 - 366 WP_021572669.1 hypothetical protein -
RG55_RS26720 () 150455..151198 - 744 WP_046201761.1 type-F conjugative transfer system pilin assembly protein TraF -
RG55_RS26725 () 151191..151448 - 258 WP_046201762.1 conjugal transfer protein TrbE -
RG55_RS26730 () 151475..153304 - 1830 WP_046201763.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
RG55_RS26735 () 153301..153723 - 423 WP_046201764.1 HNH endonuclease -
RG55_RS26740 () 153749..154120 - 372 WP_071886277.1 hypothetical protein -
RG55_RS26745 () 154117..154755 - 639 WP_046201765.1 type-F conjugative transfer system pilin assembly protein TrbC -
RG55_RS26750 () 154948..155187 + 240 WP_001066128.1 hypothetical protein -
RG55_RS28265 () 155184..155363 - 180 WP_058153243.1 hypothetical protein -
RG55_RS26755 () 155384..156376 - 993 WP_046201766.1 conjugal transfer pilus assembly protein TraU -
RG55_RS26760 () 156373..157005 - 633 WP_046201767.1 type-F conjugative transfer system protein TraW -
RG55_RS26765 () 157002..157388 - 387 WP_046201768.1 type-F conjugative transfer system protein TrbI -
RG55_RS26770 () 157385..160015 - 2631 WP_049590594.1 type IV secretion system protein TraC -
RG55_RS28270 () 160148..160495 - 348 WP_046201769.1 hypothetical protein -
RG55_RS26780 () 160523..160741 - 219 WP_046201770.1 hypothetical protein -
RG55_RS26785 () 160821..161294 - 474 WP_073520808.1 hypothetical protein -
RG55_RS26790 () 161287..161700 - 414 WP_046201772.1 hypothetical protein -
RG55_RS26795 () 161693..161914 - 222 WP_046201773.1 conjugal transfer protein TraR -
RG55_RS26800 () 162049..162564 - 516 WP_046201774.1 type IV conjugative transfer system lipoprotein TraV -
RG55_RS26805 () 162561..162812 - 252 WP_046201775.1 conjugal transfer protein TrbG -
RG55_RS26810 () 162824..163159 - 336 WP_139108888.1 conjugal transfer protein TrbD -
RG55_RS26815 () 163113..163694 - 582 WP_071886278.1 conjugal transfer protein TraP -
RG55_RS26820 () 163663..165111 - 1449 WP_046201777.1 conjugal transfer protein TraB -
RG55_RS26825 () 165111..165815 - 705 WP_149026042.1 type-F conjugative transfer system secretin TraK -
RG55_RS26830 () 165826..166392 - 567 WP_046201779.1 type IV conjugative transfer system protein TraE -
RG55_RS26835 () 166414..166725 - 312 WP_046201780.1 type IV conjugative transfer system protein TraL -
RG55_RS26840 () 166740..167105 - 366 WP_046201781.1 type IV conjugative transfer system pilin TraA -
RG55_RS26845 () 167138..167365 - 228 WP_071886279.1 conjugal transfer relaxosome protein TraY -
RG55_RS26850 () 167490..168143 - 654 WP_046201782.1 conjugal transfer protein TraJ -
RG55_RS26855 () 168336..168719 - 384 WP_046201845.1 relaxosome protein TraM -
RG55_RS26865 () 169042..169644 + 603 WP_077787755.1 hypothetical protein VF
RG55_RS26870 () 169940..170761 - 822 WP_046201784.1 DUF945 domain-containing protein -
RG55_RS26875 () 170880..171167 - 288 WP_046201785.1 hypothetical protein -
RG55_RS26885 () 171323..171625 - 303 WP_046201786.1 hypothetical protein -
RG55_RS28280 () 171649..171855 - 207 WP_046201787.1 hypothetical protein -
RG55_RS26905 () 172314..173885 - 1572 WP_073520623.1 IS66 family transposase ISCro1 Transposase
RG55_RS26910 () 173905..174252 - 348 WP_000624622.1 IS66 family transposase ISCro1 Transposase
RG55_RS26915 () 174252..174899 - 648 WP_077897823.1 IS66 family transposase IS679 Transposase
RG55_RS26920 () 175240..175401 - 162 WP_000775238.1 type I toxin-antitoxin system Hok family toxin -
- () 175447..175659 - 213 NuclAT_0 - -
- () 175447..175659 - 213 NuclAT_0 - -
- () 175447..175659 - 213 NuclAT_0 - -
- () 175447..175659 - 213 NuclAT_0 - -
RG55_RS26930 () 175608..175922 - 315 WP_000872077.1 hypothetical protein -
RG55_RS26935 () 175919..176638 - 720 WP_046201788.1 plasmid SOS inhibition protein A -
RG55_RS26940 () 176635..177069 - 435 WP_046201789.1 conjugation system SOS inhibitor PsiB -
RG55_RS26945 () 177124..179082 - 1959 WP_046201790.1 ParB/RepB/Spo0J family partition protein -
RG55_RS26950 () 179143..179376 - 234 WP_046201791.1 DUF905 family protein -
RG55_RS26955 () 179439..179972 - 534 WP_046201792.1 single-stranded DNA-binding protein -
RG55_RS26965 () 180274..180735 + 462 WP_073520809.1 hypothetical protein -
RG55_RS26975 () 180821..181384 - 564 WP_046201795.1 class I SAM-dependent methyltransferase -
RG55_RS26980 () 181431..182792 - 1362 WP_046201796.1 DUF3560 domain-containing protein -
RG55_RS26985 () 182844..183074 - 231 WP_000218642.1 hypothetical protein -
RG55_RS27005 () 184057..184248 - 192 WP_001027495.1 hypothetical protein -
RG55_RS27010 () 184245..184667 - 423 WP_032167172.1 DUF1380 family protein -
RG55_RS27015 () 184714..185016 - 303 WP_139108892.1 antirestriction protein -
RG55_RS28505 () 185551..186321 - 771 WP_046201798.1 hypothetical protein -
RG55_RS27030 () 186366..186800 - 435 WP_000274404.1 DUF1380 family protein -
RG55_RS27035 () 186812..187033 - 222 WP_046201846.1 hypothetical protein -
RG55_RS27040 () 187033..187686 - 654 WP_046201799.1 DNA methylase -
RG55_RS27050 () 188266..189966 + 1701 WP_046201411.1 group II intron reverse transcriptase/maturase -
RG55_RS27055 () 190196..190500 - 305 Protein_196 hypothetical protein -
RG55_RS27060 () 190504..191406 - 903 WP_077787757.1 DUF1281 domain-containing protein -
RG55_RS27070 () 191824..192072 + 249 WP_000618110.1 DinI-like family protein -
RG55_RS27075 () 192069..192506 + 438 WP_046201801.1 translesion error-prone DNA polymerase V autoproteolytic subunit -
RG55_RS27080 () 192506..192634 + 129 Protein_200 protein ImpB -
RG55_RS27085 () 192679..194907 - 2229 WP_032325774.1 Mov34/MPN/PAD-1 family protein -
RG55_RS27090 () 194904..196085 - 1182 WP_032325773.1 hypothetical protein -
RG55_RS27095 () 196221..197075 + 855 WP_032325772.1 WYL domain-containing protein -
RG55_RS27100 () 197088..197606 + 519 WP_000993248.1 hypothetical protein -
RG55_RS28300 () 197653..198876 - 1224 WP_089557530.1 tyrosine-type recombinase/integrase -
RG55_RS28305 () 198955..199863 - 909 Protein_206 site-specific integrase -
RG55_RS27110 () 199860..200858 - 999 WP_032325769.1 IS91 family transposase ISMno24 Transposase

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance