MGE detailed information
MGE type: Prophage MGE length: 53048 bp
Accession: NZ_CP010183 Location: 4707325..4760372 Organism: Escherichia coli strain M3 Replicon: chromosome
Accession: NZ_CP010183 Location: 4707325..4760372 Organism: Escherichia coli strain M3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG55_RS24640 () | 4704108..4705241 | + | 1134 | WP_046201463.1 | porin OmpN | - |
| RG55_RS24645 () | 4705382..4705816 | + | 435 | WP_001082294.1 | universal stress protein UspF | - |
| RG55_RS28135 () | 4706593..4706706 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| RG55_RS24650 () | 4706775..4707008 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| RG55_RS24655 () | 4707325..4707915 | + | 591 | WP_000078178.1 | recombinase family protein | - |
| RG55_RS24660 () | 4708013..4708588 | - | 576 | WP_001351719.1 | tail fiber assembly protein | - |
| RG55_RS24665 () | 4708588..4711659 | - | 3072 | WP_024251431.1 | prophage tail fiber N-terminal domain-containing protein | - |
| RG55_RS24670 () | 4711724..4712323 | - | 600 | WP_001230290.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| RG55_RS24675 () | 4712393..4715806 | - | 3414 | WP_053264956.1 | host specificity protein J | - |
| RG55_RS24680 () | 4715867..4716514 | - | 648 | WP_000741591.1 | tail assembly protein | - |
| RG55_RS24685 () | 4716412..4717155 | - | 744 | WP_001396591.1 | C40 family peptidase | - |
| RG55_RS24690 () | 4717161..4717859 | - | 699 | WP_001152432.1 | phage minor tail protein L | - |
| RG55_RS24695 () | 4717859..4718197 | - | 339 | WP_000024051.1 | phage tail protein | - |
| RG55_RS24700 () | 4718190..4721423 | - | 3234 | WP_000840622.1 | phage tail tape measure protein | - |
| RG55_RS24705 () | 4721895..4722254 | - | 360 | WP_149002945.1 | hypothetical protein | - |
| RG55_RS24710 () | 4722405..4723367 | - | 963 | WP_000094292.1 | hypothetical protein | - |
| RG55_RS24715 () | 4723394..4723786 | - | 393 | WP_000673076.1 | hypothetical protein | - |
| RG55_RS24720 () | 4723783..4724163 | - | 381 | WP_001029815.1 | hypothetical protein | - |
| RG55_RS24725 () | 4724164..4724547 | - | 384 | WP_000524260.1 | hypothetical protein | - |
| RG55_RS24730 () | 4724547..4724942 | - | 396 | WP_000634214.1 | hypothetical protein | - |
| RG55_RS28485 () | 4724946..4725122 | - | 177 | WP_000908084.1 | hypothetical protein | - |
| RG55_RS24735 () | 4725165..4726304 | - | 1140 | WP_000918482.1 | hypothetical protein | - |
| RG55_RS24740 () | 4726403..4727167 | - | 765 | WP_000770044.1 | hypothetical protein | - |
| RG55_RS24745 () | 4727272..4728384 | - | 1113 | WP_001351715.1 | hypothetical protein | - |
| RG55_RS24750 () | 4728368..4729774 | - | 1407 | WP_000763703.1 | DUF4055 domain-containing protein | - |
| RG55_RS24755 () | 4729777..4731078 | - | 1302 | WP_000625348.1 | terminase family protein | - |
| RG55_RS24760 () | 4731059..4732153 | - | 1095 | WP_000089447.1 | terminase small subunit | - |
| RG55_RS24765 () | 4732157..4732408 | - | 252 | WP_000613571.1 | hypothetical protein | - |
| RG55_RS24770 () | 4732344..4733276 | - | 933 | WP_001204037.1 | hypothetical protein | - |
| RG55_RS24775 () | 4733269..4734060 | - | 792 | WP_001291094.1 | ParB/Srx family N-terminal domain-containing protein | - |
| RG55_RS24785 () | 4734198..4735655 | - | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| RG55_RS27575 () | 4735852..4736037 | - | 186 | WP_001228688.1 | prophage lysis lipoprotein RzoD | - |
| RG55_RS24795 () | 4736254..4736751 | - | 498 | WP_001135310.1 | lysozyme RrrD | - |
| RG55_RS24800 () | 4736751..4736966 | - | 216 | WP_000839565.1 | phage lysis protein EssD | - |
| RG55_RS24805 () | 4737218..4737592 | - | 375 | WP_001348108.1 | hypothetical protein | - |
| RG55_RS24810 () | 4737764..4738192 | - | 429 | WP_000506936.1 | cell envelope integrity protein TolA | - |
| RG55_RS24820 () | 4739237..4739779 | - | 543 | WP_000640161.1 | DUF1133 family protein | - |
| RG55_RS24825 () | 4739776..4740066 | - | 291 | WP_000247763.1 | DUF1364 domain-containing protein | - |
| RG55_RS24830 () | 4740066..4740665 | - | 600 | WP_000940319.1 | DUF1367 family protein | - |
| RG55_RS24835 () | 4741082..4743346 | - | 2265 | WP_000091105.1 | S8 family peptidase | - |
| RG55_RS24840 () | 4743321..4744475 | - | 1155 | WP_000385105.1 | ATP-binding protein | - |
| RG55_RS24850 () | 4744669..4745100 | - | 432 | WP_001141107.1 | DUF977 family protein | - |
| RG55_RS24855 () | 4745116..4745877 | - | 762 | WP_000450658.1 | DUF1627 domain-containing protein | - |
| RG55_RS24860 () | 4745900..4746646 | - | 747 | WP_000788769.1 | ATP-binding protein | - |
| RG55_RS24865 () | 4746653..4747440 | - | 788 | Protein_4452 | hypothetical protein | - |
| RG55_RS24870 () | 4747518..4747940 | - | 423 | WP_000693803.1 | hypothetical protein | - |
| RG55_RS24875 () | 4747937..4748191 | - | 255 | WP_001072342.1 | hypothetical protein | - |
| RG55_RS24880 () | 4748271..4748690 | + | 420 | WP_000233319.1 | helix-turn-helix domain-containing protein | - |
| RG55_RS24890 () | 4748933..4749112 | + | 180 | WP_001326317.1 | hypothetical protein | - |
| RG55_RS24895 () | 4749123..4749278 | + | 156 | WP_001169151.1 | YdaF family protein | - |
| RG55_RS24900 () | 4749275..4749763 | - | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| RG55_RS24910 () | 4750205..4750426 | + | 222 | WP_000560224.1 | killing protein KilR | - |
| RG55_RS24915 () | 4750426..4750596 | + | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| RG55_RS24920 () | 4750671..4750946 | + | 276 | WP_024251429.1 | hypothetical protein | - |
| RG55_RS24925 () | 4751048..4753648 | + | 2601 | WP_000105136.1 | exodeoxyribonuclease VIII | - |
| RG55_RS24930 () | 4753641..4754450 | + | 810 | WP_000166319.1 | recombination protein RecT | - |
| RG55_RS24935 () | 4754507..4754701 | + | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| RG55_RS24940 () | 4754694..4754891 | + | 198 | WP_024170988.1 | DUF1187 family protein | - |
| - () | 4754700..4754866 | - | 167 | NuclAT_1 | - | Antitoxin Detail |
| - () | 4754700..4754866 | - | 167 | NuclAT_1 | - | Antitoxin Detail |
| - () | 4754700..4754866 | - | 167 | NuclAT_1 | - | Antitoxin Detail |
| - () | 4754700..4754866 | - | 167 | NuclAT_1 | - | Antitoxin Detail |
| RG55_RS24945 () | 4754970..4755185 | + | 216 | WP_000079604.1 | excisionase XisR | - |
| RG55_RS24950 () | 4755187..4756422 | + | 1236 | WP_000040852.1 | site-specific integrase | - |
| RG55_RS24955 () | 4756474..4757409 | + | 936 | WP_053264959.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| RG55_RS24960 () | 4757538..4758911 | - | 1374 | WP_000123739.1 | ATP-dependent RNA helicase DbpA | - |
| RG55_RS24970 () | 4759389..4760372 | - | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| RG55_RS28640 () | 4760386..4760433 | - | 48 | WP_211180494.1 | protein YnaN | - |
| RG55_RS24975 () | 4760627..4761859 | + | 1233 | WP_000628065.1 | diguanylate cyclase DgcM | - |
| RG55_RS24980 () | 4761880..4762443 | - | 564 | WP_001046821.1 | DNA endonuclease SmrA | - |
| RG55_RS24985 () | 4762773..4763681 | - | 909 | WP_000885467.1 | LysR family transcriptional regulator | - |
| RG55_RS24990 () | 4763857..4765167 | + | 1311 | WP_000444949.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|