MGE detailed information
MGE type: Prophage MGE length: 46859 bp
Accession: NZ_CP010183 Location: 4074245..4121103 Organism: Escherichia coli strain M3 Replicon: chromosome
Accession: NZ_CP010183 Location: 4074245..4121103 Organism: Escherichia coli strain M3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG55_RS21210 () | 4074694..4075491 | - | 798 | WP_001300307.1 | DgsA anti-repressor MtfA | - |
| RG55_RS21220 () | 4075727..4076752 | - | 1026 | WP_073520621.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| RG55_RS21225 () | 4076752..4076955 | - | 204 | WP_000096344.1 | DUF4224 domain-containing protein | - |
| RG55_RS21230 () | 4077014..4079455 | - | 2442 | WP_073520620.1 | exonuclease | - |
| RG55_RS21235 () | 4079549..4079740 | - | 192 | WP_001070255.1 | DUF1482 family protein | - |
| RG55_RS21240 () | 4079737..4079925 | - | 189 | WP_000854558.1 | cell division inhibition protein DicB | - |
| RG55_RS21250 () | 4080493..4080711 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| RG55_RS21260 () | 4080871..4081026 | - | 156 | WP_073520775.1 | DUF1391 family protein | - |
| RG55_RS21270 () | 4081316..4081594 | - | 279 | WP_061892358.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RG55_RS21275 () | 4081596..4081787 | - | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| RG55_RS21280 () | 4081808..4082179 | - | 372 | WP_135405263.1 | hypothetical protein | - |
| RG55_RS21285 () | 4082276..4082578 | + | 303 | WP_000172735.1 | transcriptional regulator | - |
| RG55_RS21290 () | 4082575..4083000 | + | 426 | WP_073520618.1 | Rha family transcriptional regulator | - |
| RG55_RS21295 () | 4083072..4084142 | + | 1071 | WP_073520617.1 | phage replisome organizer | - |
| RG55_RS21300 () | 4084149..4084901 | + | 753 | WP_073520616.1 | IS21 family transposase ISLisp1 | Transposase |
| RG55_RS21305 () | 4084924..4085637 | + | 714 | WP_073520615.1 | DUF1627 domain-containing protein | - |
| RG55_RS21310 () | 4085653..4086075 | + | 423 | WP_073520614.1 | DUF977 family protein | - |
| RG55_RS21315 () | 4086072..4086371 | + | 300 | WP_001266136.1 | DUF4406 domain-containing protein | - |
| RG55_RS21320 () | 4086364..4086900 | + | 537 | WP_001514296.1 | hypothetical protein | - |
| RG55_RS21325 () | 4086902..4087258 | + | 357 | WP_077897822.1 | hypothetical protein | - |
| RG55_RS21330 () | 4087304..4087516 | + | 213 | WP_053264976.1 | hypothetical protein | - |
| RG55_RS28075 () | 4087552..4087881 | + | 330 | Protein_3808 | hypothetical protein | - |
| RG55_RS28080 () | 4088005..4088220 | + | 216 | Protein_3809 | DUF551 domain-containing protein | - |
| RG55_RS28465 () | 4088347..4088514 | - | 168 | WP_187469051.1 | hypothetical protein | - |
| RG55_RS21340 () | 4088782..4088937 | + | 156 | WP_000813256.1 | type I toxin-antitoxin system toxin HokD | - |
| RG55_RS21345 () | 4089105..4089383 | + | 279 | WP_024175747.1 | hypothetical protein | - |
| RG55_RS21350 () | 4089385..4090440 | + | 1056 | WP_073520612.1 | DUF968 domain-containing protein | - |
| RG55_RS21355 () | 4090441..4090818 | + | 378 | WP_029397194.1 | RusA family crossover junction endodeoxyribonuclease | - |
| RG55_RS21360 () | 4090808..4091158 | + | 351 | WP_000532208.1 | antitermination protein | - |
| RG55_RS21365 () | 4091172..4091558 | - | 387 | WP_000024152.1 | hypothetical protein | - |
| RG55_RS21375 () | 4091808..4092686 | - | 879 | WP_000193722.1 | hypothetical protein | - |
| RG55_RS21395 () | 4093369..4093797 | + | 429 | WP_053265055.1 | cell envelope integrity protein TolA | - |
| RG55_RS21400 () | 4094607..4096550 | + | 1944 | WP_073535060.1 | DUF1737 domain-containing protein | - |
| RG55_RS21405 () | 4096694..4096870 | + | 177 | WP_073520609.1 | DUF1378 family protein | - |
| RG55_RS21410 () | 4096896..4097201 | + | 306 | WP_073520608.1 | DUF826 domain-containing protein | - |
| RG55_RS21415 () | 4097279..4097494 | + | 216 | WP_000284510.1 | class II holin family protein | - |
| RG55_RS21420 () | 4097499..4098032 | + | 534 | WP_073520607.1 | lysozyme | - |
| RG55_RS28110 () | 4098551..4098736 | + | 186 | WP_149026033.1 | Rz1 family lipoprotein | - |
| RG55_RS21430 () | 4098952..4099431 | - | 480 | WP_073520605.1 | DUF1398 family protein | - |
| RG55_RS21435 () | 4100075..4100551 | + | 477 | WP_073520604.1 | DUF1441 family protein | - |
| RG55_RS21440 () | 4100548..4102671 | + | 2124 | WP_073520603.1 | phage terminase large subunit family protein | - |
| RG55_RS21445 () | 4102668..4102880 | + | 213 | WP_053265017.1 | hypothetical protein | - |
| RG55_RS21450 () | 4102880..4104385 | + | 1506 | WP_073520602.1 | phage portal protein | - |
| RG55_RS21455 () | 4104330..4106354 | + | 2025 | WP_149026032.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| RG55_RS21460 () | 4106442..4106768 | + | 327 | WP_073520601.1 | DUF2190 family protein | - |
| RG55_RS21465 () | 4106761..4107042 | + | 282 | WP_073520600.1 | DNA breaking-rejoining protein | - |
| RG55_RS21470 () | 4107045..4107671 | + | 627 | WP_073520599.1 | phage tail protein | - |
| RG55_RS21475 () | 4107681..4108079 | + | 399 | WP_073520598.1 | phage tail protein | - |
| RG55_RS21480 () | 4108087..4108845 | + | 759 | WP_073520597.1 | phage tail protein | - |
| RG55_RS21485 () | 4108864..4109280 | + | 417 | WP_073520596.1 | phage minor tail protein G | - |
| RG55_RS21490 () | 4109307..4109696 | + | 390 | WP_073520595.1 | phage tail assembly protein T | - |
| RG55_RS21495 () | 4109686..4112301 | + | 2616 | WP_073520594.1 | phage tail tape measure protein | - |
| RG55_RS21500 () | 4112298..4112627 | + | 330 | WP_053265008.1 | phage tail protein | - |
| RG55_RS21505 () | 4112627..4113325 | + | 699 | WP_073520593.1 | phage minor tail protein L | - |
| RG55_RS21510 () | 4113331..4114074 | + | 744 | WP_073520772.1 | C40 family peptidase | - |
| RG55_RS21515 () | 4113972..4114610 | + | 639 | WP_072019665.1 | tail assembly protein | - |
| RG55_RS21520 () | 4114856..4118332 | + | 3477 | WP_073535061.1 | host specificity protein J | - |
| RG55_RS21525 () | 4118509..4118649 | + | 141 | WP_073520592.1 | Hok/Gef family protein | - |
| RG55_RS21530 () | 4118791..4120198 | + | 1408 | Protein_3845 | prophage tail fiber N-terminal domain-containing protein | - |
| RG55_RS21535 () | 4120208..4120432 | + | 225 | WP_034172970.1 | tail fiber assembly protein | - |
| RG55_RS21540 () | 4120429..4121103 | + | 675 | WP_073520590.1 | DUF4376 domain-containing protein | - |
| RG55_RS21545 () | 4121265..4121579 | - | 315 | WP_073520589.1 | YkgJ family cysteine cluster protein | - |
| RG55_RS21555 () | 4122420..4122950 | - | 531 | WP_001079074.1 | cytochrome b | - |
| RG55_RS21560 () | 4123293..4123943 | - | 651 | WP_001007749.1 | metal-binding protein ZinT | - |
| RG55_RS21565 () | 4124200..4124835 | - | 636 | WP_001240105.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| RG55_RS21570 () | 4124836..4125840 | - | 1005 | WP_000740094.1 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|