MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 124633 bp
Accession: NZ_CP010183 Location: 2862774..2987406 Organism: Escherichia coli strain M3 Replicon: chromosome
Accession: NZ_CP010183 Location: 2862774..2987406 Organism: Escherichia coli strain M3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG55_RS14950 () | 2858300..2859712 | + | 1413 | WP_000059395.1 | cell division protein FtsP | - |
| RG55_RS14955 () | 2859823..2862042 | + | 2220 | WP_000095187.1 | YgiQ family radical SAM protein | - |
| RG55_RS14960 () | 2862085..2862342 | - | 258 | WP_000848528.1 | lipoprotein YqhH | - |
| RG55_RS14965 () | 2862393..2863319 | - | 927 | WP_000691598.1 | YbjP/YqhG family protein | - |
| RG55_RS14970 () | 2863519..2864346 | - | 828 | WP_000013149.1 | 2,5-didehydrogluconate reductase DkgA | - |
| RG55_RS14975 () | 2864451..2865614 | - | 1164 | WP_001058807.1 | alcohol dehydrogenase | - |
| RG55_RS14985 () | 2865808..2866707 | + | 900 | WP_000817717.1 | DNA-binding transcriptional regulator YqhC | - |
| RG55_RS14990 () | 2866747..2867406 | - | 660 | WP_000268419.1 | DedA family protein | - |
| RG55_RS14995 () | 2867546..2868733 | - | 1188 | WP_000763931.1 | cystathionine beta-lyase | - |
| RG55_RS15005 () | 2868985..2869719 | + | 735 | WP_000527844.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| RG55_RS15010 () | 2869726..2870151 | + | 426 | WP_001240712.1 | TonB system transport protein ExbD | - |
| RG55_RS15015 () | 2870190..2871074 | - | 885 | WP_000018760.1 | putative oxidoreductase YghA | VF |
| RG55_RS15020 () | 2871265..2871759 | + | 495 | WP_000439331.1 | TIGR00645 family protein | - |
| RG55_RS15025 () | 2871799..2872839 | - | 1041 | WP_000262154.1 | L-glyceraldehyde 3-phosphate reductase | - |
| RG55_RS15030 () | 2872996..2873883 | + | 888 | WP_001137768.1 | dienelactone hydrolase family protein | - |
| RG55_RS15035 () | 2874002..2874289 | + | 288 | WP_001059136.1 | DUF2623 domain-containing protein | - |
| RG55_RS15045 () | 2874478..2875596 | + | 1119 | WP_000145410.1 | hydrogenase 2 small subunit | - |
| RG55_RS15050 () | 2875599..2876585 | + | 987 | WP_001081876.1 | hydrogenase 2 operon protein HybA | - |
| RG55_RS15055 () | 2876575..2877753 | + | 1179 | WP_000017694.1 | Ni/Fe-hydrogenase cytochrome b subunit | - |
| RG55_RS15060 () | 2877750..2879453 | + | 1704 | WP_000083065.1 | hydrogenase 2 large subunit | - |
| RG55_RS15065 () | 2879453..2879947 | + | 495 | WP_001221953.1 | HyaD/HybD family hydrogenase maturation endopeptidase | - |
| RG55_RS15070 () | 2879940..2880428 | + | 489 | WP_000134014.1 | hydrogenase-2 assembly chaperone | - |
| RG55_RS15075 () | 2880421..2880762 | + | 342 | WP_000544952.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| RG55_RS15080 () | 2880775..2881023 | + | 249 | WP_000334896.1 | hydrogenase maturation factor HybG | - |
| RG55_RS15085 () | 2881146..2882012 | - | 867 | WP_001298746.1 | glutathione-dependent disulfide-bond oxidoreductase | - |
| RG55_RS15090 () | 2882217..2884076 | + | 1860 | WP_001345957.1 | bifunctional glutathionylspermidine amidase/synthase | - |
| RG55_RS15095 () | 2884368..2885867 | + | 1500 | WP_000933296.1 | inorganic phosphate transporter PitB | - |
| RG55_RS15100 () | 2885916..2886608 | - | 693 | WP_001190783.1 | thymidylate kinase | - |
| RG55_RS15105 () | 2886782..2887495 | + | 714 | WP_001076233.1 | thymidylate kinase | - |
| RG55_RS15110 () | 2887527..2888285 | + | 759 | WP_000339512.1 | hypothetical protein | - |
| RG55_RS15115 () | 2888331..2889680 | + | 1350 | WP_000896880.1 | lipopolysaccharide biosynthesis protein | - |
| RG55_RS15120 () | 2889680..2890504 | + | 825 | WP_000984976.1 | hypothetical protein | - |
| RG55_RS15125 () | 2890516..2891076 | + | 561 | WP_001299422.1 | YtfJ family protein | - |
| RG55_RS15130 () | 2891107..2892177 | + | 1071 | WP_000779661.1 | LPS export ABC transporter permease LptF | - |
| RG55_RS15135 () | 2892174..2893253 | + | 1080 | WP_001300858.1 | LPS export ABC transporter permease LptG | - |
| RG55_RS15140 () | 2893289..2894461 | - | 1173 | WP_000524972.1 | 8-amino-7-oxononanoate synthase | VF |
| RG55_RS15145 () | 2894461..2894709 | - | 249 | WP_000248097.1 | acyl carrier protein | - |
| RG55_RS15150 () | 2894741..2895655 | - | 915 | WP_001077143.1 | NAD-dependent epimerase/dehydratase family protein | - |
| RG55_RS15155 () | 2895652..2897373 | - | 1722 | WP_001355868.1 | 4-hydroxyphenylalkanoate adenylyltransferase | VF |
| RG55_RS15165 () | 2897744..2898886 | + | 1143 | WP_000388786.1 | DNA-binding protein | - |
| RG55_RS15170 () | 2898893..2899657 | - | 765 | WP_001297764.1 | transcriptional regulator GlcC | - |
| RG55_RS15175 () | 2899908..2901407 | + | 1500 | WP_000026117.1 | glycolate oxidase subunit GlcD | - |
| RG55_RS15180 () | 2901407..2902459 | + | 1053 | WP_000943059.1 | glycolate oxidase subunit GlcE | - |
| RG55_RS15185 () | 2902470..2903693 | + | 1224 | WP_001194682.1 | glycolate oxidase subunit GlcF | - |
| RG55_RS15190 () | 2903698..2904102 | + | 405 | WP_000853256.1 | protein GlcG | - |
| RG55_RS15195 () | 2904124..2906295 | + | 2172 | WP_000084053.1 | malate synthase G | - |
| RG55_RS15200 () | 2906651..2908333 | + | 1683 | WP_053264768.1 | glycolate permease GlcA | - |
| RG55_RS15215 () | 2908818..2913383 | + | 4566 | WP_001034505.1 | hypothetical protein | VF |
| RG55_RS15220 () | 2913513..2914322 | + | 810 | WP_001365924.1 | Leader peptidase PppA | VF |
| RG55_RS15225 () | 2914388..2914798 | + | 411 | WP_001324279.1 | type II secretion system pilot lipoprotein GspS-beta | - |
| RG55_RS15230 () | 2914816..2915775 | + | 960 | WP_000135067.1 | Type II secretion system protein C | VF |
| RG55_RS15235 () | 2915805..2917865 | + | 2061 | WP_000498824.1 | Type II secretion system protein D | VF |
| RG55_RS15240 () | 2917865..2919358 | + | 1494 | WP_000249348.1 | Type II secretion system protein E | VF |
| RG55_RS15245 () | 2919358..2920581 | + | 1224 | WP_001173448.1 | Type II secretion system protein F | VF |
| RG55_RS15250 () | 2920598..2921053 | + | 456 | WP_001087296.1 | Type II secretion system protein G | VF |
| RG55_RS15255 () | 2921057..2921620 | + | 564 | WP_001115154.1 | Type II secretion system protein H | VF |
| RG55_RS15260 () | 2921617..2921988 | + | 372 | WP_000820104.1 | Type II secretion system protein I | VF |
| RG55_RS15265 () | 2921985..2922584 | + | 600 | WP_001250465.1 | Type II secretion system protein J | VF |
| RG55_RS15270 () | 2922587..2923564 | + | 978 | WP_000633238.1 | Putative type II secretion system protein K | VF |
| RG55_RS15275 () | 2923561..2924739 | + | 1179 | WP_032178690.1 | Type II secretion system protein L | VF |
| RG55_RS15280 () | 2924741..2925277 | + | 537 | WP_000942786.1 | Type II secretion system protein M | VF |
| RG55_RS15285 () | 2925558..2926400 | - | 843 | WP_073520781.1 | DUF4942 domain-containing protein | - |
| RG55_RS15290 () | 2926485..2926682 | - | 198 | WP_000445282.1 | DUF957 domain-containing protein | - |
| RG55_RS28390 () | 2926702..2927190 | - | 489 | Protein_2733 | hypothetical protein | - |
| RG55_RS15305 () | 2927187..2927564 | - | 378 | WP_073520673.1 | TA system toxin CbtA family protein | Toxin Detail |
| RG55_RS15310 () | 2927654..2928022 | - | 369 | WP_001327592.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| RG55_RS15320 () | 2928185..2928406 | - | 222 | WP_000692300.1 | DUF987 domain-containing protein | - |
| RG55_RS15325 () | 2928475..2928951 | - | 477 | WP_001186724.1 | RadC family protein | - |
| RG55_RS15330 () | 2928967..2929446 | - | 480 | WP_000706981.1 | antirestriction protein | - |
| RG55_RS15340 () | 2929785..2930603 | - | 819 | WP_001234639.1 | DUF945 domain-containing protein | - |
| RG55_RS15355 () | 2930887..2931342 | - | 456 | WP_000581502.1 | hypothetical protein | - |
| RG55_RS15360 () | 2931418..2933934 | - | 2517 | WP_073535058.1 | hypothetical protein | - |
| RG55_RS15365 () | 2934055..2937177 | - | 3123 | WP_073520671.1 | autotransporter adhesin Ag43 | - |
| RG55_RS15370 () | 2937511..2938383 | - | 873 | WP_073520670.1 | GTPase family protein | - |
| RG55_RS15375 () | 2938482..2939354 | - | 873 | WP_073520669.1 | hypothetical protein | - |
| RG55_RS15390 () | 2940275..2941548 | + | 1274 | WP_149026035.1 | IS3 family transposase IS2 | Transposase |
| RG55_RS15400 () | 2942371..2942796 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| RG55_RS15405 () | 2942793..2943143 | + | 351 | WP_073520666.1 | IS66 family transposase ISEc23 | Transposase |
| RG55_RS15410 () | 2943174..2943344 | + | 171 | Protein_2748 | IS66 family transposase ISEc23 | Transposase |
| RG55_RS15415 () | 2943393..2944037 | + | 645 | WP_073520664.1 | IS66 family transposase ISCro1 | Transposase |
| RG55_RS15420 () | 2944034..2944381 | + | 348 | WP_073520663.1 | IS66 family transposase ISSfl3 | Transposase |
| RG55_RS15425 () | 2944401..2945938 | + | 1538 | Protein_2751 | IS66 family transposase ISSfl3 | Transposase |
| RG55_RS27430 () | 2945972..2947425 | + | 1454 | Protein_2752 | IS66 family transposase ISEc23 | Transposase |
| RG55_RS27435 () | 2947429..2947820 | - | 392 | Protein_2753 | IS21 family transposase ISEc62 | Transposase |
| RG55_RS15460 () | 2948457..2949059 | - | 603 | WP_149026034.1 | hypothetical protein | - |
| RG55_RS27445 () | 2949154..2949360 | - | 207 | WP_000211310.1 | AlpA family transcriptional regulator | - |
| RG55_RS15480 () | 2950082..2950294 | + | 213 | WP_021537663.1 | hemolysin expression modulator Hha | - |
| RG55_RS15495 () | 2951014..2951583 | + | 570 | WP_021537662.1 | inovirus Gp2 family protein | - |
| RG55_RS15505 () | 2951843..2952226 | + | 384 | WP_073520660.1 | hypothetical protein | - |
| RG55_RS15510 () | 2952223..2952636 | + | 414 | WP_073520659.1 | hypothetical protein | - |
| RG55_RS15520 () | 2952942..2953565 | + | 624 | WP_073520658.1 | DNA-binding protein | - |
| RG55_RS15525 () | 2953661..2953894 | + | 234 | WP_053264776.1 | hypothetical protein | - |
| RG55_RS15530 () | 2953947..2954153 | - | 207 | WP_049590175.1 | DUF4222 domain-containing protein | - |
| RG55_RS15535 () | 2954793..2956445 | + | 1653 | WP_001376511.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| RG55_RS15540 () | 2956455..2956982 | + | 528 | WP_073520657.1 | Leukotoxin-activating lysine-acyltransferase LtxC | VF |
| RG55_RS15545 () | 2956998..2966198 | + | 9201 | WP_077898537.1 | Toxin CdiA | VF |
| RG55_RS15555 () | 2966201..2966590 | + | 390 | WP_064769067.1 | hypothetical protein | - |
| RG55_RS15560 () | 2966849..2967358 | + | 510 | WP_073520656.1 | hypothetical protein | - |
| RG55_RS15565 () | 2967363..2967818 | + | 456 | WP_073520655.1 | hypothetical protein | - |
| RG55_RS15575 () | 2968292..2968477 | + | 186 | WP_071531845.1 | hypothetical protein | - |
| RG55_RS15580 () | 2968636..2968887 | + | 252 | Protein_2770 | hypothetical protein | - |
| RG55_RS15590 () | 2968898..2969971 | + | 1074 | WP_187655886.1 | Putative ribonuclease YeeF | VF |
| RG55_RS15595 () | 2969971..2970306 | + | 336 | WP_073520654.1 | hypothetical protein | - |
| RG55_RS15600 () | 2970945..2971181 | + | 237 | WP_073520653.1 | hypothetical protein | - |
| RG55_RS28395 () | 2971234..2971476 | + | 243 | Protein_2774 | hypothetical protein | - |
| RG55_RS28400 () | 2971573..2971827 | + | 255 | WP_175406691.1 | hemagglutinin | - |
| RG55_RS15610 () | 2971824..2972183 | + | 360 | WP_073520651.1 | DUF596 domain-containing protein | - |
| RG55_RS28585 () | 2972191..2972323 | + | 133 | Protein_2777 | filamentous hemagglutinin | - |
| RG55_RS15620 () | 2972514..2972915 | + | 402 | WP_073520649.1 | hypothetical protein | - |
| RG55_RS15625 () | 2973071..2974315 | + | 1245 | WP_073520648.1 | GIY-YIG nuclease family protein | - |
| RG55_RS15630 () | 2974551..2976296 | + | 1746 | WP_129542103.1 | AAA family ATPase | - |
| RG55_RS15640 () | 2976722..2978110 | + | 1389 | WP_073520646.1 | type VI secretion system ImpA family N-terminal domain-containing protein | - |
| RG55_RS15645 () | 2978576..2980022 | + | 1447 | Protein_2782 | AAA family ATPase | - |
| RG55_RS15650 () | 2980222..2980866 | + | 645 | WP_073520645.1 | hypothetical protein | - |
| RG55_RS15655 () | 2981050..2981474 | + | 425 | Protein_2784 | phosphoadenosine phosphosulfate reductase | - |
| RG55_RS28410 () | 2981675..2981824 | + | 150 | WP_157916178.1 | hypothetical protein | - |
| RG55_RS15660 () | 2981894..2983681 | + | 1788 | WP_073520644.1 | hypothetical protein | - |
| RG55_RS15665 () | 2983734..2984861 | - | 1128 | WP_073520643.1 | XRE family transcriptional regulator | - |
| RG55_RS15670 () | 2984865..2985143 | - | 279 | WP_073520776.1 | peroxidase | - |
| RG55_RS15675 () | 2986435..2987697 | - | 1263 | WP_073520642.1 | integrase arm-type DNA-binding domain-containing protein | - |
| RG55_RS15685 () | 2988076..2988783 | - | 708 | WP_000234514.1 | DUF554 domain-containing protein | - |
| RG55_RS28590 () | 2988936..2989019 | + | 84 | WP_211180506.1 | protein YqgH | - |
| RG55_RS15695 () | 2989181..2991316 | + | 2136 | WP_032178689.1 | ornithine decarboxylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|